mRNA_Ecto-sp13_S_contig16282.4551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16282.4551.1
Unique NamemRNA_Ecto-sp13_S_contig16282.4551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16282.4551.1 vs. uniprot
Match: D8LIR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR4_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 6.680e-38
Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = 2 
Query:   32 VTQKATMSQIKEDIRCLAVNGGEFSGGLERVMEGLEDELYEFKCAMRKGFDVLVVKEKNLSSEVEELRGKVKEWEKR 262
            +TQKATMS+IKEDIR L+VNGGE+SGGLERVMEGLEDELYEFKCAMRKGFDVLVVKEK+LSSEVEELRGKVKEWEK+
Sbjct:    1 MTQKATMSKIKEDIRHLSVNGGEYSGGLERVMEGLEDELYEFKCAMRKGFDVLVVKEKSLSSEVEELRGKVKEWEKK 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16282.4551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIR4_ECTSI6.680e-3890.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16282contigEcto-sp13_S_contig16282:1062..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons4
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.3536274-CDS-Ecto-sp13_S_contig16282:1061..11041681462857.3536274-CDS-Ecto-sp13_S_contig16282:1061..1104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16282 1062..1104 +
1681462857.3658693-CDS-Ecto-sp13_S_contig16282:1828..19241681462857.3658693-CDS-Ecto-sp13_S_contig16282:1828..1924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16282 1829..1924 +
1681462857.3813975-CDS-Ecto-sp13_S_contig16282:2071..21521681462857.3813975-CDS-Ecto-sp13_S_contig16282:2071..2152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16282 2072..2152 +
1681462857.3909297-CDS-Ecto-sp13_S_contig16282:2395..24391681462857.3909297-CDS-Ecto-sp13_S_contig16282:2395..2439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16282 2396..2439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16282.4551.1prot_Ecto-sp13_S_contig16282.4551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16282 1062..2439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16282.4551.1

>prot_Ecto-sp13_S_contig16282.4551.1 ID=prot_Ecto-sp13_S_contig16282.4551.1|Name=mRNA_Ecto-sp13_S_contig16282.4551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
ERGASGEEAAGDTKGDHVTDQGGYSMLGRQRRRIFRRTGKSHGGARGRAV
RVQVRHEKGLRRARREREESVLRGGRTSRESQGMGEKA
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mRNA from alignment at Ecto-sp13_S_contig16282:1062..2440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16282.4551.1 ID=mRNA_Ecto-sp13_S_contig16282.4551.1|Name=mRNA_Ecto-sp13_S_contig16282.4551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16282:1062..2440+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGAGGTGCTAGCGGTGAGGAAGCGGCTGGTGACACAAAAGGTGAAGG
TTTTGGTGATTTCAGCCTCTGGCTCATCTCTACCTCTGTCTGTCTTGTCT
GCGTGCCAGTCTATCTGTCTATCTGGCTGGCTGGCTGGCTTACTTGGCTG
GCTTACTTGCTTCTCTCTCTCTCTCGCTCTCTCTCTCTTTCTCGCTGTCT
GTCTATCTCTCTTTCTCTGTGTGTGTCTCTCTCCCCTTTGCCTGTAGTTC
ACGCTGTCTTCCCGGTCCTCTCCGTCTCTCTCGTCTATCCTGCTTTGGGT
TGGGATGGTTTTTCCTTGTGCATCGCCCAAGGCAGTTAGTTCTGCTGCCT
CGCTTTCGTCCATGATCATCGTCATTTACCCGACCCGGATCGATTATTTA
GCTCACCCCCCGCCCCTTATAACCCGTGACCATTCCTAATAGGTGCCCCC
TCAAACGTGACTTTTTTTCCTTGCAAGAATGTCTGTGTACCTCCAGAAAA
ATGAATACAGAATAAGTCAGCAATGAACCCTTCTTGTTATGACCTATGAC
CCATGTCCCTCTTTCTTCTGATCTCCGAGCAACATCACGTCCGTTGAGAG
TGCGCCGTCCTTCTGATCACGCCGACGTGCCTACTTTTTTTTTTACATGT
GTGAGCGGATTCGTTCGTGCTTGCCCCAGGGATCGACTGTTACTCCAAGT
CAGTCTCAACCAACCTCCCTACGGAATGTCTTGTTTGATTGCATGGCGTT
GGTTGCTGCGTTGTCAGGCGACCATGTCACAGATCAAGGAGGATATTCGA
TGCTTGGCCGTCAACGGCGGAGAATTTTCCGGAGGACTGGAAAGAGTCAT
GGAGGGGCTAGAGGTTCGTGTTTTCTTCATCGATGCGATTAGTCTTGTGT
GGAGAAGTCTCGTGTTGTGGCTCTCACCGTTTGTTTGATGTTCTCCCTCC
TTGAATTGCTGTTGTTATATTCTCTCATGGGCATTTTATTTTCTCTTCTT
TTCTGAGCAGGACGAGCTGTACGAGTTCAAGTGCGCCATGAGAAAGGGCT
TCGACGTGCTCGTCGTGAAAGAGAAGAATCTGTCCTCCGAGGTGCCCCAT
GTTGTTTCCGCTTGTCATGTATCTCCTTGTCTCATTTCCATTGTATGTTT
TTTATTTTTTTGCGTGTGTCATCGTTCGGTAACAAGAAGCCCTGCCCTGC
TTTGCTGCAGCACAATCACGATAATGACCCCACCCTCACCCACACAGCAA
AAACAACAACCACAACAACTTACCTTCGGTGTTGGCGCATGTTCTCCGAC
GTCGCGCCTGCTGTTTTGATTGGCCGACCAATAGGTGGAAGAACTTCGAG
GGAAAGTCAAGGAATGGGAGAAAAGGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16282:1062..2440+

>mRNA_Ecto-sp13_S_contig16282.4551.1 ID=mRNA_Ecto-sp13_S_contig16282.4551.1|Name=mRNA_Ecto-sp13_S_contig16282.4551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16282:1062..2440+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGAGGTGCTAGCGGTGAGGAAGCGGCTGGTGACACAAAAGGCGACCA
TGTCACAGATCAAGGAGGATATTCGATGCTTGGCCGTCAACGGCGGAGAA
TTTTCCGGAGGACTGGAAAGAGTCATGGAGGGGCTAGAGGACGAGCTGTA
CGAGTTCAAGTGCGCCATGAGAAAGGGCTTCGACGTGCTCGTCGTGAAAG
AGAAGAATCTGTCCTCCGAGGTGGAAGAACTTCGAGGGAAAGTCAAGGAA
TGGGAGAAAAGGCC
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