prot_Ecto-sp13_S_contig16275.4548.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16275.4548.1
Unique Nameprot_Ecto-sp13_S_contig16275.4548.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length224
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16275.4548.1 vs. uniprot
Match: D7FQF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF3_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 3.770e-78
Identity = 139/162 (85.80%), Postives = 144/162 (88.89%), Query Frame = 0 
Query:   51 GVFEQRRHGTDGNAADGXXDQIPPSLLLAARLLYAISLDPGGRSSLLAAKCLPPLIHLRRQLHAKAAAXXXXXXXXXXXTAAVQPALECTKRPAGTNSGSAAFARRGGTEEVERVAFIGNQQAQHSGGDVVTGDSSSEPDVEGIDVIVSLIVDQLVGRSNGR 212
            GVF QR HGTDGNAADG  DQ PPSLLLAARLLYAISLDPGGRSSLL AKCLPPLI LRRQLH +AAA   XXXXXXX TAAVQPALECTK PAG NSGSAAFAR+GGTEEVE+  F+GNQQAQHSGGDV TGDSSSEPDVEGI+VIVSLIVDQLVGRSN R
Sbjct:  189 GVFGQRHHGTDGNAADGGGDQTPPSLLLAARLLYAISLDPGGRSSLLEAKCLPPLIRLRRQLHTEAAAEATXXXXXXXTTAAVQPALECTKIPAGPNSGSAAFARKGGTEEVEKEGFVGNQQAQHSGGDVATGDSSSEPDVEGIEVIVSLIVDQLVGRSNVR 350
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16275.4548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQF3_ECTSI3.770e-7885.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.614

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16275contigEcto-sp13_S_contig16275:2660..3599 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16275.4548.1mRNA_Ecto-sp13_S_contig16275.4548.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16275 2521..3634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16275.4548.1 ID=prot_Ecto-sp13_S_contig16275.4548.1|Name=mRNA_Ecto-sp13_S_contig16275.4548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MVEAGAISGLLMHLATAADCTSSSSSSSQQQQQQQQRTPKKEEAESARVG
GVFEQRRHGTDGNAADGGGDQIPPSLLLAARLLYAISLDPGGRSSLLAAK
CLPPLIHLRRQLHAKAAAEATATAEASATTAAVQPALECTKRPAGTNSGS
AAFARRGGTEEVERVAFIGNQQAQHSGGDVVTGDSSSEPDVEGIDVIVSL
IVDQLVGRSNGRGKNRVLERACM*
back to top