mRNA_Ecto-sp13_S_contig16275.4548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16275.4548.1
Unique NamemRNA_Ecto-sp13_S_contig16275.4548.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16275.4548.1 vs. uniprot
Match: D7FQF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF3_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 3.010e-77
Identity = 139/162 (85.80%), Postives = 144/162 (88.89%), Query Frame = 3 
Query:  186 GVFEQRRHGTDGNAADGXXDQIPPSLLLAARLLYAISLDPGGRSSLLAAKCLPPLIHLRRQLHAKAAAXXXXXXXXXXXTAAVQPALECTKRPAGTNSGSAAFARRGGTEEVERVAFIGNQQAQHSGGDVVTGDSSSEPDVEGIDVIVSLIVDQLVGRSNGR 671
            GVF QR HGTDGNAADG  DQ PPSLLLAARLLYAISLDPGGRSSLL AKCLPPLI LRRQLH +AAA   XXXXXXX TAAVQPALECTK PAG NSGSAAFAR+GGTEEVE+  F+GNQQAQHSGGDV TGDSSSEPDVEGI+VIVSLIVDQLVGRSN R
Sbjct:  189 GVFGQRHHGTDGNAADGGGDQTPPSLLLAARLLYAISLDPGGRSSLLEAKCLPPLIRLRRQLHTEAAAEATXXXXXXXTTAAVQPALECTKIPAGPNSGSAAFARKGGTEEVEKEGFVGNQQAQHSGGDVATGDSSSEPDVEGIEVIVSLIVDQLVGRSNVR 350
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16275.4548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQF3_ECTSI3.010e-7785.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16275contigEcto-sp13_S_contig16275:2521..3634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score249.2
Seed ortholog evalue1.8e-63
Seed eggNOG ortholog2880.D7FQF3
Model size846
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs28MT9@1,2QUBJ@2759
Cds size672
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.183798-UTR-Ecto-sp13_S_contig16275:2520..26591681462857.183798-UTR-Ecto-sp13_S_contig16275:2520..2659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16275 2521..2659 -
1681462857.2164762-UTR-Ecto-sp13_S_contig16275:3599..36341681462857.2164762-UTR-Ecto-sp13_S_contig16275:3599..3634Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16275 3600..3634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.1949642-CDS-Ecto-sp13_S_contig16275:2659..30531681462857.1949642-CDS-Ecto-sp13_S_contig16275:2659..3053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16275 2660..3053 -
1681462857.2052016-CDS-Ecto-sp13_S_contig16275:3321..35991681462857.2052016-CDS-Ecto-sp13_S_contig16275:3321..3599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16275 3322..3599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16275.4548.1prot_Ecto-sp13_S_contig16275.4548.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16275 2660..3599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16275.4548.1

>prot_Ecto-sp13_S_contig16275.4548.1 ID=prot_Ecto-sp13_S_contig16275.4548.1|Name=mRNA_Ecto-sp13_S_contig16275.4548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MVEAGAISGLLMHLATAADCTSSSSSSSQQQQQQQQRTPKKEEAESARVG
GVFEQRRHGTDGNAADGGGDQIPPSLLLAARLLYAISLDPGGRSSLLAAK
CLPPLIHLRRQLHAKAAAEATATAEASATTAAVQPALECTKRPAGTNSGS
AAFARRGGTEEVERVAFIGNQQAQHSGGDVVTGDSSSEPDVEGIDVIVSL
IVDQLVGRSNGRGKNRVLERACM*
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mRNA from alignment at Ecto-sp13_S_contig16275:2521..3634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16275.4548.1 ID=mRNA_Ecto-sp13_S_contig16275.4548.1|Name=mRNA_Ecto-sp13_S_contig16275.4548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16275:2521..3634- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCATCACAAGCAGATCCTTCCACGATACCTGCCATGGTTGAGGCGGGA
GCGATTTCCGGGCTGTTGATGCACCTGGCAACCGCGGCCGATTGCACCTC
TTCTTCTTCTTCTTCTTCGCAGCAGCAGCAGCAACAACAACAACGTACTC
CGAAGAAAGAAGAGGCTGAAAGCGCAAGAGTAGGTGGAGTATTCGAGCAA
CGCCGTCACGGAACAGATGGAAACGCAGCCGACGGAGGTGGGGACCAGAT
TCCTCCTTCCCTCTTGCTGGCGGCACGGCTCCTATACGCCATTTCTTTGG
ACCCTGGCGGAAGGTACGCGTCAAATTTTGAGAACTGTTTTTACCAGGAA
CCATCAGCATTTTGCTTGTGAGCCCAACCTGCTGTAGTTCCTGTCTGCCT
TTGCCTCTAACAATGGCTGCGTACGAGACAAATACAAATATTGGCACACG
CATTGCGAGGGCAATGATTTCGTTAGTAGAGCATTCAGATCTGGATAGTG
CCCTGACTCGAAATCCTCAAGGATGGATGGAGAAGGTTGTGTGCAGTTTT
CATTTACCGGCCACCTTGTGTCGCTTCGCAGGTCGTCTCTTCTGGCGGCC
AAATGTCTCCCGCCGCTCATCCACCTCCGACGGCAACTGCACGCGAAAGC
AGCAGCGGAAGCGACAGCGACTGCAGAAGCTAGCGCCACCACCGCCGCCG
TTCAGCCTGCTTTGGAATGCACGAAAAGACCAGCTGGTACAAACAGCGGT
TCGGCAGCGTTTGCACGAAGGGGAGGCACGGAGGAGGTAGAGAGAGTTGC
ATTTATCGGAAACCAACAGGCGCAGCATAGTGGCGGAGACGTCGTCACCG
GTGATAGTAGTAGTGAGCCTGATGTGGAAGGCATAGACGTGATCGTCAGC
TTGATTGTCGATCAGCTTGTGGGTAGGTCGAACGGCAGAGGAAAGAACCG
GGTGTTGGAACGCGCATGTATGTAGACACTTTGGGATGCCAGCGTGTGCC
GCACGTACGTGGTACAGGACAGTGCGAGTGATGACACCCTCGCTACTGTA
GAACCAATTTACACCTCGATTGATTGCTCGACAATCAAAAGAGGGTGCGA
AAGCTAACCGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16275:2521..3634-

>mRNA_Ecto-sp13_S_contig16275.4548.1 ID=mRNA_Ecto-sp13_S_contig16275.4548.1|Name=mRNA_Ecto-sp13_S_contig16275.4548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16275:2521..3634- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGAGGCGGGAGCGATTTCCGGGCTGTTGATGCACCTGGCAACCGC
GGCCGATTGCACCTCTTCTTCTTCTTCTTCTTCGCAGCAGCAGCAGCAAC
AACAACAACGTACTCCGAAGAAAGAAGAGGCTGAAAGCGCAAGAGTAGGT
GGAGTATTCGAGCAACGCCGTCACGGAACAGATGGAAACGCAGCCGACGG
AGGTGGGGACCAGATTCCTCCTTCCCTCTTGCTGGCGGCACGGCTCCTAT
ACGCCATTTCTTTGGACCCTGGCGGAAGGTCGTCTCTTCTGGCGGCCAAA
TGTCTCCCGCCGCTCATCCACCTCCGACGGCAACTGCACGCGAAAGCAGC
AGCGGAAGCGACAGCGACTGCAGAAGCTAGCGCCACCACCGCCGCCGTTC
AGCCTGCTTTGGAATGCACGAAAAGACCAGCTGGTACAAACAGCGGTTCG
GCAGCGTTTGCACGAAGGGGAGGCACGGAGGAGGTAGAGAGAGTTGCATT
TATCGGAAACCAACAGGCGCAGCATAGTGGCGGAGACGTCGTCACCGGTG
ATAGTAGTAGTGAGCCTGATGTGGAAGGCATAGACGTGATCGTCAGCTTG
ATTGTCGATCAGCTTGTGGGTAGGTCGAACGGCAGAGGAAAGAACCGGGT
GTTGGAACGCGCATGTATGTAG
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