mRNA_Ecto-sp13_S_contig16274.4547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16274.4547.1
Unique NamemRNA_Ecto-sp13_S_contig16274.4547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16274.4547.1 vs. uniprot
Match: A0A6H5KFI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI5_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 6.300e-63
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 1 
Query:    1 LGAGAQGSTEHAGGAGGRASSSSVVAILELQDPESGLLASASRAFIRYGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLV---------FSHETMGFGTVHLYLARPRPNTR 348
            L AGA G+T+ AGGAGG+ASSSSVVAILELQDPESGLLASASRAFI+YGAP+LGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLV         FSHETMGFGTVHLYLARPRPNTR
Sbjct:  200 LDAGAHGATDDAGGAGGQASSSSVVAILELQDPESGLLASASRAFIKYGAPLLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLVAPLPPGLEVFSHETMGFGTVHLYLARPRPNTR 324
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16274.4547.1 vs. uniprot
Match: D8LTT5_ECTSI (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT5_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.390e-47
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    1 LGAGAQGSTEHAGGAGGRASSSSVVAILELQDPESGLLASASRAFIRYGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLV 279
            L AGAQG+TE AGGAGG ASSSSVVAILELQDPESGLLASA+RAFI+YGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALM DAGKIHLV
Sbjct:  152 LDAGAQGATEDAGGAGGHASSSSVVAILELQDPESGLLASATRAFIKYGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMGDAGKIHLV 244
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16274.4547.1 vs. uniprot
Match: A0A0G4EH38_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EH38_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 3.110e-9
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   73 VAILELQDPE-SGLLASASRAFIRYGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLVFSHETMGFGTVHLYLARPR 336
            +AILE+ +P  +GLLA  +R FIR  A V  W +SG   EY HL +SI  FP   ++  +++ AG    V   ETMGFGTV +++A P+
Sbjct:  205 LAILEISEPAGTGLLARLARWFIRLNALVGAW-LSGRRREYRHLLDSIQAFPKQDDFCYMIDKAG--FTVLGVETMGFGTVKIFVAEPK 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16274.4547.1 vs. uniprot
Match: A0A1H9ZTT1_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=2 Tax=Stigmatella erecta TaxID=83460 RepID=A0A1H9ZTT1_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 3.220e-5
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   73 VAILELQDPESGLLASASRAFIRYGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLVFSHETMGFGTVHLYLARPR 336
            +AILEL +P+ GLL    R  IR   P LG  +SG+G EY +L+ SI  FP    +  +M +AG + ++  H+ +  G   L++A+PR
Sbjct:  230 IAILELSEPQGGLLGPLLRFQIRKVVPWLGAKLSGSG-EYRYLQESIAAFPQPEAFADIMREAG-LEVLQVHK-LTLGVCCLFVAQPR 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16274.4547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFI5_9PHAE6.300e-6386.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT5_ECTSI3.390e-4792.47Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
A0A0G4EH38_VITBC3.110e-943.82Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1H9ZTT1_9DELT3.220e-538.64Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16274contigEcto-sp13_S_contig16274:1806..3950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score164.1
Seed ortholog evalue4e-38
Seed eggNOG ortholog2880.D8LTT5
Model size351
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
EggNOG OGsCOG2226@1,KOG1540@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-28_002880.1
Cds size351
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.131463-CDS-Ecto-sp13_S_contig16274:1805..18801681462857.131463-CDS-Ecto-sp13_S_contig16274:1805..1880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16274 1806..1880 -
1681462857.141909-CDS-Ecto-sp13_S_contig16274:2506..26421681462857.141909-CDS-Ecto-sp13_S_contig16274:2506..2642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16274 2507..2642 -
1681462857.1506827-CDS-Ecto-sp13_S_contig16274:3810..39501681462857.1506827-CDS-Ecto-sp13_S_contig16274:3810..3950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16274 3811..3950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16274.4547.1prot_Ecto-sp13_S_contig16274.4547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16274 1806..3950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16274.4547.1

>prot_Ecto-sp13_S_contig16274.4547.1 ID=prot_Ecto-sp13_S_contig16274.4547.1|Name=mRNA_Ecto-sp13_S_contig16274.4547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
LGAGAQGSTEHAGGAGGRASSSSVVAILELQDPESGLLASASRAFIRYGA
PVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLVFSHETMG
FGTVHLYLARPRPNTR*
back to top

mRNA from alignment at Ecto-sp13_S_contig16274:1806..3950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16274.4547.1 ID=mRNA_Ecto-sp13_S_contig16274.4547.1|Name=mRNA_Ecto-sp13_S_contig16274.4547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16274:1806..3950- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGTGCGGGGGCGCAAGGGTCGACAGAGCACGCTGGCGGTGCGGGAGG
ACGAGCGTCTTCGTCCTCGGTTGTTGCGATTCTGGAGCTCCAGGACCCGG
AGTCGGGCTTGCTGGCGTCGGCGTCAAGGGCTTTCATAAGGTGCGTTGTT
TGTGATCGGCAACGCAGCAGCTTGCCTCGGGCAACCGTGCTGGTCCCCTC
TTAAGAGCTTCTCGTTTTTATGGTGGTGTGTCATCGCCATGATACGGGAC
GGTGCGTAACGAGGACGTTTTTTTTTATCTGAAGACGTATGAAGTGCGGT
ATTTTCGACCATTTTTTTTCAACACTAGTGTCCTGGTCGTCGTCGTCGAC
GTCGTCTTTTTGTTTCCTGGGTACAGCGTTACCATTTGCTTCGCTTTTGG
CGTGTACGCCTTGCGAAAGGCAGTGAAAGAACCACAACCGCTCGCACGAC
GTCCGTTATGCGAACGATCAAGCTTGGGCCTTTCAAGCGTTTTTTTCTGG
CATTTTTTTACTGCTGTGTCTACGTTGTATCGACGAAAGTGTATGAATGA
TATAGACACCAATGCAAACTCGTGCTTCCCATCGTTGGCTTGAGTAGATG
GGGGACGGAGTTCCGTTCGCCCGCGGCTGGGATGCCCATGATTGTGCCAA
CGCGAAACGGTTAGCACCAATTGGATATAGTTGATATTGAAGCATTCAAG
AGGATGAGCGACCGCATACGACGACAACCGAATTCATGTCGCTGGAAGAA
TCACATACATGTTTTTATCTGGAATCACTTGGACGTTCGCGTGATACTGC
TCGAGGGCATTACAATCGCCTGAAGCAGGGATCAAGACAATATATTGATG
TTGCCAGCGTGCTGACTGGTCTGATGAATAATACTCCACATGTGTACGTT
ATTCCCGTTTTGGTTGTAGGCCTTTGCGAAGCCGCCCCCTTCGTGTTGCC
CATTTCGAGACGACTTGTGACAATTTTTGCGCTTTCACTCCGGCCAACTT
CACAAGGGGCCGCCGTCACCTGCCTGTTGGCTTTGAGAGTTTGTACATTC
AAATGCCACAACAACGTTTCGGCGAGACACAAACATATCCTACCGAAACC
GAATTACCACCCTATTTTCTTGTCTTCGTGCTTTTCGCTCTTGTGCGGCA
CCTGCCGTGCTCCTTGTAATGTTCCAATGCTCCTGTCGCTGTTCGATTAC
TCTCATCGCTCTTCAAGTGCCTTTATCGCCGTTCGAGTTCCCTCATCGCT
GTTCGATTGCTCCTATCGCTGCTCTGTTGTCTGTGGGGATATCGGTGTGT
CGAGACAGGTACGGGGCGCCTGTGTTGGGCTGGGTGATGAGCGGCAACGG
AGCTGAGTACGGGCACTTGAAGAACTCCATTCTCAGATTCCCCTCGGTGT
CGGAGTGGACAGCCCTGATGGAAGACGCAGGCAAGATTCACTTAGTCGCA
CCGCTGCCCCCGGGTGCTTACCGGCTACAGTCTCTGTTTTTATAGTTGTC
TTTAGCGCGGTGCTTATGTGGAGTGTGGAGTCACGGGAATGTCATGCTTG
TTAGTGTCGTGTACTCTTTGTTTGTTATCTTGGAAGCTGTGAAGAAACGA
TCAACCTTTGCAAGCACAGTTCGTATGTGCTCCTCCCCCAGGCGTTCATG
TCCCACATTCTTTTGCTTCGTCCCGCGAATATCACGACGACTGAATGGCA
TGCCCACGACTGCGATACTGAGTTTAAGTCCTTGAGAGCACGGACCAGTT
TTTTTTTGTCGTTAGCACAGACGGCGTTTTTTCAGTGTCGTCTTACCTCT
AGCCCGGTGGGCTGTACACGTTTTCTTTCATGCATCTTTTCATGCCTATT
GCTCGTCTTCGCGTTGCGTTTTTTTCCGCTTTGCTCACACTATTTTTCCC
ATGACCCCCCAGCATTGTGACTCTTTTAATGTGTACGGCACCCCCGATAA
CACATCATCCCCTTTATTTCAACTATGAAGGAACAGGCTGTTGCGCCTTG
ATCACGTCAGTTTTCTCATGTGTATGCGCACGACGCCCCCCCCCCCTACG
CACGGTTAGCAGGGCTGGAGGTTTTCTCCCACGAGACGATGGGATTCGGG
ACGGTTCACCTCTACCTCGCAAGACCTCGACCCAACACCCGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16274:1806..3950-

>mRNA_Ecto-sp13_S_contig16274.4547.1 ID=mRNA_Ecto-sp13_S_contig16274.4547.1|Name=mRNA_Ecto-sp13_S_contig16274.4547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16274:1806..3950- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGTGCGGGGGCGCAAGGGTCGACAGAGCACGCTGGCGGTGCGGGAGG
ACGAGCGTCTTCGTCCTCGGTTGTTGCGATTCTGGAGCTCCAGGACCCGG
AGTCGGGCTTGCTGGCGTCGGCGTCAAGGGCTTTCATAAGGTACGGGGCG
CCTGTGTTGGGCTGGGTGATGAGCGGCAACGGAGCTGAGTACGGGCACTT
GAAGAACTCCATTCTCAGATTCCCCTCGGTGTCGGAGTGGACAGCCCTGA
TGGAAGACGCAGGCAAGATTCACTTAGTTTTCTCCCACGAGACGATGGGA
TTCGGGACGGTTCACCTCTACCTCGCAAGACCTCGACCCAACACCCGATA
G
back to top