mRNA_Ecto-sp13_S_contig16261.4539.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16261.4539.1
Unique NamemRNA_Ecto-sp13_S_contig16261.4539.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16261.4539.1 vs. uniprot
Match: A0A6H5L4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.670e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = -3 
Query:    2 RGAPIPSEAGSRGAGLRMVAAANALAGSGLIVGEKGAGRKRAAASA 139
            RGAPIPSEAGSRGAGLR+VAAANALAGSGLIVGEKGAGRKRAAASA
Sbjct:  982 RGAPIPSEAGSRGAGLRLVAAANALAGSGLIVGEKGAGRKRAAASA 1027
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16261.4539.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.800e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = -3 
Query:    2 RGAPIPSEAGSRGAGLRMVAAANALAGSGLIVGEKGAGRKRAAASA 139
            RGAPIPSEAGSRGAGLR+VAAANALAGSGLIVGEKGAGRKRAAASA
Sbjct: 1624 RGAPIPSEAGSRGAGLRLVAAANALAGSGLIVGEKGAGRKRAAASA 1669
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16261.4539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4X7_9PHAE3.670e-1497.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ23_ECTSI3.800e-1497.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16261contigEcto-sp13_S_contig16261:1017..2250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size588
Hectar predicted targeting categorysignal anchor
Exons3
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.4362059-CDS-Ecto-sp13_S_contig16261:1016..11811681462856.4362059-CDS-Ecto-sp13_S_contig16261:1016..1181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16261 1017..1181 -
1681462856.4451642-CDS-Ecto-sp13_S_contig16261:1364..15651681462856.4451642-CDS-Ecto-sp13_S_contig16261:1364..1565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16261 1365..1565 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.4540427-UTR-Ecto-sp13_S_contig16261:1565..16191681462856.4540427-UTR-Ecto-sp13_S_contig16261:1565..1619Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16261 1566..1619 -
1681462856.4645562-UTR-Ecto-sp13_S_contig16261:2082..22501681462856.4645562-UTR-Ecto-sp13_S_contig16261:2082..2250Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16261 2083..2250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16261.4539.1prot_Ecto-sp13_S_contig16261.4539.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16261 1017..1565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16261.4539.1

>prot_Ecto-sp13_S_contig16261.4539.1 ID=prot_Ecto-sp13_S_contig16261.4539.1|Name=mRNA_Ecto-sp13_S_contig16261.4539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MHSWYSRYSAAARATRRRSRATPPPWSTTAVSPSISSVLTVAAAQVSAVA
LEADDSSFALFFFFFFFLGGVVGSVIIIIIIIIVVVVFGTIVVLLVVLLV
VLPAVVVIVCVIFVVGFGGTVV
back to top

mRNA from alignment at Ecto-sp13_S_contig16261:1017..2250-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16261.4539.1 ID=mRNA_Ecto-sp13_S_contig16261.4539.1|Name=mRNA_Ecto-sp13_S_contig16261.4539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16261:1017..2250- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGCTGGCCGCCGCCCTCTTCCGCCCGGCGCCCTTCTCGCCGACGATA
AGCCCCGACCCCGCCAGGGCGTTCGCCGCCGCCACCATCCGCAGGCCCGC
GCCTCGCGAGCCGGCCTCCGACGGGATGGGGGCCCCGCGGGTGGGTCCGC
AGAAGGGGGAGTAAACGGGCGGGGGCGGGCGGGGGAGTGGGTTGGTTTGG
GGGGGAAGGGGGGGGGGGGGGGGGGAGGGGGGGTCCGTCTGACAGAGACA
AGGAAGTGTGTCAGCGGAACATTGCTCGTATCGACCGACAAATAGCCCGA
TCCTCGCCTCTGAACTCGTCGTCTTTTTCCGATCAAAGGCAGAAAAGAAG
AAAAATGCGGGGAGGGGGGGGCTCCGTGGGGATAGGGAGCGGAAGGGCCG
TACCATCCTCGTGGTCTCGAAGAGGAGCGCCCCCCGATCAACCCCGAGAA
CAACTTCGGAGTCGTTCATTACGGGCGTAGACGGCTATTTTGCGCGTCCT
TTCGTAGAAAAGTAAATAAAAAACGTAAACACGTGCGCCCGGAATACCCG
ACCCATCGACACTGCGCCTCTGCCTCCCCCGCCACGGCACACGCGCGCGG
CATTGTACGGCTACAATGGGGTTGTTCACAGCATCACCTCTCCATTTCCG
GACCGACGGTTTCGGCGAACTCTGACGGCGCGGCCATGCACAGCTGGTAC
AGCAGGTACTCGGCGGCAGCCCGGGCAACGCGCCGCCGTTCACGCGCGAC
ACCCCCCCCCTGGTCGACCACCGCGGTGTCCCCCTCCATTTCCTCGGTCT
TGACGGTCGCGGCAGCACAAGTCTCGGCGGTGGCGCTGGAGGCGGACGAT
TCTTCTTTCGCCTTGTTCTTCTTCTTCTTCTTCTTCTTCTGCTCGTCCTT
GGTGGTGTCGTCGGCAGCGTTATCATCATCATCATCATCATCATCCTCAT
GTCGTCGTCTTCGGCACCATCATCGTCCTTCTCGTCGTCCTTCCCGCCGT
CGTCGTCATCGTCTGCGTTATCTTCGTCGTCGGTTTCGGGGGCACCGTCG
TTTCCTCCTCCTTCTTCCTCTTGGTGGTGTCGTCGGCAGCGTTATCATCA
TCATCATCATCATCATCGTCGTCGTCGTCTTCGGCACCATCGTCGTCCTT
CTCGTCGTCCTTCTCGTCGTCCTTCCCGCCGTCGTCGTCATCGTCTGCGT
TATCTTCGTCGTCGGTTTCGGGGGCACCGTCGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16261:1017..2250-

>mRNA_Ecto-sp13_S_contig16261.4539.1 ID=mRNA_Ecto-sp13_S_contig16261.4539.1|Name=mRNA_Ecto-sp13_S_contig16261.4539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16261:1017..2250- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGCTGGTACAGCAGGTACTCGGCGGCAGCCCGGGCAACGCGCCG
CCGTTCACGCGCGACACCCCCCCCCTGGTCGACCACCGCGGTGTCCCCCT
CCATTTCCTCGGTCTTGACGGTCGCGGCAGCACAAGTCTCGGCGGTGGCG
CTGGAGGCGGACGATTCTTCTTTCGCCTTGTTCTTCTTCTTCTTCTTCTT
CCTTGGTGGTGTCGTCGGCAGCGTTATCATCATCATCATCATCATCATCG
TCGTCGTCGTCTTCGGCACCATCGTCGTCCTTCTCGTCGTCCTTCTCGTC
GTCCTTCCCGCCGTCGTCGTCATCGTCTGCGTTATCTTCGTCGTCGGTTT
CGGGGGCACCGTCGTT
back to top