mRNA_Ecto-sp13_S_contig16259.4538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16259.4538.1
Unique NamemRNA_Ecto-sp13_S_contig16259.4538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16259.4538.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 4.440e-86
Identity = 156/185 (84.32%), Postives = 161/185 (87.03%), Query Frame = 1 
Query:    1 MPRQTRQASSPATNPSPSTAGSFPPAXXXXXXXXXXXXXXXXXXXXXXXAGSPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPVCRNFSAGTCAWTGLLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYMNRCLNAEACIVLKEDGVPANVRLAGEDD---VGKRCRDCKRARP 546
            MPRQ+RQASSPAT P           XXXXXXXXXXXXXXXXXXXXXXX  SPEQVPADRELQYLCPRTGCNTNL LKENIRKDRADYP CRNF+AGTCAWTGLLIKYPGKV WLCASEFEVGEVVWA+TIPDVERPAC++N CLNAEACIVLK DGVP NVRLAGEDD   VGKRCRDCKRA P
Sbjct:    1 MPRQSRQASSPATKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADP 185
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BLAST of mRNA_Ecto-sp13_S_contig16259.4538.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.440e-65
Identity = 104/132 (78.79%), Postives = 109/132 (82.58%), Query Frame = 1 
Query:  151 GSPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPVCRNFSAGTCAWTG--LLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYMNRCLNAEACIVLKEDGVPANVRLAGEDDVGKRCRDCKRA 540
            GSPEQVPADRELQ+LCP TGCNTNL LKENI KDRADY  C    AGT A     LLIKYPGKV WLCASEFEVGEVVWAYT PDVERPACY+N CLN +ACI+LKE+G P NVRLAGEDDV KRC DCKRA
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADY--CTT-PAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRA 181
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BLAST of mRNA_Ecto-sp13_S_contig16259.4538.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 5.140e-58
Identity = 88/116 (75.86%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:  163 QVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPVCRNFSAGTCAWTGLLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYMNRCLNAEACIVLKEDGVPANVRLAGEDDV 510
            +  ADRE QYLCP TGCNTNL       KDRADYP CR FS GTC WTGLLIKYPG V WLCASEFEVGEVVWAYTIPDVERPACY+  CLN +A I+LKE+GVP N RLAGEDDV
Sbjct:   99 RAKADREPQYLCPGTGCNTNL------HKDRADYPACRTFSVGTCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
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BLAST of mRNA_Ecto-sp13_S_contig16259.4538.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.510e-15
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  151 GSPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPVCRNFS 285
            GS EQVPADRE QYLCP TGCNTNL LKENI K RADYP CR  +
Sbjct:   83 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16259.4538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE4.440e-8684.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI1.440e-6578.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW7_ECTSI5.140e-5875.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI3.510e-1577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16259contigEcto-sp13_S_contig16259:593..2907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size698
Hectar predicted targeting categoryother localisation
Exons4
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.3596904-CDS-Ecto-sp13_S_contig16259:592..9891681462856.3596904-CDS-Ecto-sp13_S_contig16259:592..989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16259 593..989 +
1681462856.3731236-CDS-Ecto-sp13_S_contig16259:1522..16321681462856.3731236-CDS-Ecto-sp13_S_contig16259:1522..1632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16259 1523..1632 +
1681462856.387478-CDS-Ecto-sp13_S_contig16259:2416..24761681462856.387478-CDS-Ecto-sp13_S_contig16259:2416..2476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16259 2417..2476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.397797-UTR-Ecto-sp13_S_contig16259:2476..25091681462856.397797-UTR-Ecto-sp13_S_contig16259:2476..2509Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16259 2477..2509 +
1681462856.4073927-UTR-Ecto-sp13_S_contig16259:2809..29071681462856.4073927-UTR-Ecto-sp13_S_contig16259:2809..2907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16259 2810..2907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16259.4538.1prot_Ecto-sp13_S_contig16259.4538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16259 593..2476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16259.4538.1

>prot_Ecto-sp13_S_contig16259.4538.1 ID=prot_Ecto-sp13_S_contig16259.4538.1|Name=mRNA_Ecto-sp13_S_contig16259.4538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MPRQTRQASSPATNPSPSTAGSFPPAASSAAPAPPPARAAGSSASAGSSA
GSPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPVCRNFSAGTCA
WTGLLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYMNRCLNAEAC
IVLKEDGVPANVRLAGEDDVGKRCRDCKRARPYWTRTS*
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mRNA from alignment at Ecto-sp13_S_contig16259:593..2907+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16259.4538.1 ID=mRNA_Ecto-sp13_S_contig16259.4538.1|Name=mRNA_Ecto-sp13_S_contig16259.4538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16259:593..2907+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGCCAAACCCGCCAAGCCTCCAGCCCCGCCACCAACCCATCGCC
CTCCACCGCTGGATCCTTTCCGCCGGCTGCTTCTTCGGCTGCTCCTGCCC
CTCCGCCCGCGCGCGCAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCC
GGCTCGCCCGAGCAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCC
ACGCACCGGTTGCAACACCAACCTCTCGTTAAAGGAAAATATCCGCAAAG
ACAGGGCCGACTACCCCGTCTGCAGGAACTTTAGCGCCGGCACCTGCGCG
TGGACCGGCCTTTTGATCAAGTACCCCGGAAAGGTCTCCTGGCTCTGCGC
CTCCGAGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAGGTG
AGAGCTTTCGTGTATCTACAGCAGTAGTATAATGAATGATCTTCCTTCAC
GGATGTAATCTGCAGCGAGCGGCAGGCTTGGAGTTCGCGCGTTGATGTTG
CGGTTGTTCGTATGTATGAAAGCGAGTCATCTTTTTTTCCGACTCACATT
ATGTCCATACAAAGTTGTTTACGCCGCACAACATTTAGGCGCTCTTCATT
ATTTTTCGGCGCTCTTCGGGATGGGGTATGAATTATATGCCCACGTCGTA
GAACTAACACGATTAATTCCTGATTTCTGTCACAAGAAAACCACACAACC
ACCAAGCAACCTTGAAACGTTTTTTGTGCTGAGCTGTGTAAGGTTGTCGC
ACAAACCTTGCTCCTCCCTGCGCTGTTGAATCGCTCAGAAAGGGAACAGA
TCTACTTCAACAAAACGCTACAACAAAAAAACGTTTTTCACTGACGAGTT
TTCCGCCTCCGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTCACCTTCTCTTTTTGTGATCAAACAGACGTGGAACGCCCGGCGTGC
TATATGAACAGGTGCCTCAACGCCGAGGCCTGCATCGTCCTCAAGGAGGA
CGGCGTCCCCGCCAACGTTAGGCTGGCCGGCGAGGACGACGTGAGTCCTT
TATTTCTGTTTCACAAAACTATCTTTCCCGTCCCTACCCCTTCCTTCTGC
CTGCCGAACACAACGCAACATCAACCTCTTATTTATGTTCTCGCCCGTCA
AGAATCGTACTGTACGTGTTTGGCATTTGTCTGATGTCCTTTCGCGTATA
TACCTATAATACATGCGCACGCACGTGCTCGGTACTATGTGATCCTCCTT
TTTGCTACGCAAAGACAAACGCTGACAACGCAAGACACATACATTTCTTC
GTTCCAACACCATTTGTTTTTGTGTTCCAGCCTGCTGCCGTGGAATTGCG
CACATGTTCGGTTATATGTAGTGTTCGCCCTGTCCTTCCTGCTGCGCAAA
GAAGACATAATGATGACGCAAGACACATGTTTGTAGTTCCTGCCGATAAT
ATGCGCACTGCCATGAACACAACACCATAGCGTTCCTGCCCGAACATATC
CGCACGCACATGCTCGGTGCAACAAGACGGGTTTTTTTTGTGTTCGACAC
CATTATTCTCAGCGTGAATATGCGCACATACATGTTCGATATGTACAGTA
TGTGTTCCTGTCTTTGCTGCTGAGCAAACACTCAAGCTGGCGCAGGACCT
ACTTCTTTTTTCATTCCTAGTGTTTGTGTACACTTTTTTTTTCGTGTTCC
ACGCCATTATTTTCAGTCCTCTTTGTCCTGTTCTTGACACTTTATCTGCT
GCGCAACGACATAGTGGTGACGCAGTACGCATCGTTTTTTCCCTTTACAC
ATTTTTCTCGTGCAATTCATACAGGTTGGCAAGCGCTGCCGTGACTGCAA
ACGTGCCCGACCATACTGGACACGGACCAGTTAATCGTCAAGTCTACCCA
GCCCTTGCACGTGGGCTGTGCCATGAAACACCGTCGGGAGCTCGAGGACA
AGATCAACGAAAGCTGTTCGCCTGGTCAGAACGCAACCCATCGACCACAT
CAACGACAACATAACCCCATCTCAGATTCTGGACGAAGCACCTTCTTCGA
CTCCATATTTGCTGGAATATATTCAGGGAACATTGAAATAGCTGGTCAAA
CTCAAAAAACCTACCAAAATGTTCCAGAGTACCTCTAACTCATGTCGGTT
CCAACTGCCTATGTAACCCACGTCGAGATTGCAGCTGCCCGACAGTTATA
CAACCATAACATAAGAGTTACCCTCGTTGGCCAACCCTTTCCACCTCGTC
CGTCCCATGATTCATGCGATGTTTTGTACGGGGGCGAGCACTACCGAACT
TTGCAATTTAATCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16259:593..2907+

>mRNA_Ecto-sp13_S_contig16259.4538.1 ID=mRNA_Ecto-sp13_S_contig16259.4538.1|Name=mRNA_Ecto-sp13_S_contig16259.4538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16259:593..2907+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGCCAAACCCGCCAAGCCTCCAGCCCCGCCACCAACCCATCGCC
CTCCACCGCTGGATCCTTTCCGCCGGCTGCTTCTTCGGCTGCTCCTGCCC
CTCCGCCCGCGCGCGCAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCC
GGCTCGCCCGAGCAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCC
ACGCACCGGTTGCAACACCAACCTCTCGTTAAAGGAAAATATCCGCAAAG
ACAGGGCCGACTACCCCGTCTGCAGGAACTTTAGCGCCGGCACCTGCGCG
TGGACCGGCCTTTTGATCAAGTACCCCGGAAAGGTCTCCTGGCTCTGCGC
CTCCGAGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAGACG
TGGAACGCCCGGCGTGCTATATGAACAGGTGCCTCAACGCCGAGGCCTGC
ATCGTCCTCAAGGAGGACGGCGTCCCCGCCAACGTTAGGCTGGCCGGCGA
GGACGACGTTGGCAAGCGCTGCCGTGACTGCAAACGTGCCCGACCATACT
GGACACGGACCAGTTAA
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