mRNA_Ecto-sp13_S_contig16253.4537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16253.4537.1
Unique NamemRNA_Ecto-sp13_S_contig16253.4537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16253.4537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16253contigEcto-sp13_S_contig16253:518..1427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size324
Hectar predicted targeting categoryother localisation
Exons3
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.289783-UTR-Ecto-sp13_S_contig16253:517..6091681462856.289783-UTR-Ecto-sp13_S_contig16253:517..609Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16253 518..609 -
1681462856.3243-UTR-Ecto-sp13_S_contig16253:1399..14271681462856.3243-UTR-Ecto-sp13_S_contig16253:1399..1427Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16253 1400..1427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.2981987-CDS-Ecto-sp13_S_contig16253:609..7291681462856.2981987-CDS-Ecto-sp13_S_contig16253:609..729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16253 610..729 -
1681462856.3067286-CDS-Ecto-sp13_S_contig16253:871..9281681462856.3067286-CDS-Ecto-sp13_S_contig16253:871..928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16253 872..928 -
1681462856.3157473-CDS-Ecto-sp13_S_contig16253:1372..13991681462856.3157473-CDS-Ecto-sp13_S_contig16253:1372..1399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16253 1373..1399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16253.4537.1prot_Ecto-sp13_S_contig16253.4537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16253 610..1399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16253.4537.1

>prot_Ecto-sp13_S_contig16253.4537.1 ID=prot_Ecto-sp13_S_contig16253.4537.1|Name=mRNA_Ecto-sp13_S_contig16253.4537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MSEALVGGEGLNPALVERGSKKLQEFQKELKVLAEKDTADKDKAISVAAK
AAKKKKKKGGGGKKKKK*
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mRNA from alignment at Ecto-sp13_S_contig16253:518..1427-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16253.4537.1 ID=mRNA_Ecto-sp13_S_contig16253.4537.1|Name=mRNA_Ecto-sp13_S_contig16253.4537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=910bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16253:518..1427- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCTCTCTCAGCCGCTTGCAAGAAGATGTCGGAAGCTCTGGTCGGAG
GGGAGGTGGGACAAGGAGTGATCGAAATGCATTCGCGCTCAAGAGACACA
ACAGCCGAACAACAGCGATAATCACAACCCCTTACGCTGACAAAAACCCA
CGGACGCCGAGCCCTTTGACTAGAAGAACATGTTATCAGTCGAATAGTTA
ATGTTTACCGTGGCGCCTGGTTTGATTCACAGGTGCCTGTGCCAGAAGCC
CACCTTGGTAACCTGCACCGCAGTAGTAGTGGGCATGTAGTGGCGGTTGA
CATGGTTGACCAGTGTGCTTCCGTCGTTAGGGTTTTGAATTTGAAACAAC
GCGGCATCGGGCGGGAGGGCGGTGTTTGCGGCGACTGAAAGACGCTGTCA
AGCGTTGTTTGCCTCAGCAAGCTCATCTTTGTCCAGGTTTAGACAATATT
TGTCTCTTCAAAAGGGAGATGTCCCATTTTTCCTCTCCTGTCAACGCAGG
GCCTTAACCCCGCGCTGGTGGAGCGTGGCAGCAAGAAGCTTCAGGAGTTC
CAAAAGGTACCTACGTTTCCTTGTATGCTGTTCTCAAGCCAGCACTCTGT
CTCGTTGTCGTAACTCCCCCTGCCCAACGGCTAAAGTTGTCCACTGAAGA
ATCGGTAACTATCTGACAACAAAGTGCGTGCGTTCATACGCCAATTAGGA
ACTGAAGGTGCTGGCGGAGAAAGATACGGCGGACAAGGACAAGGCCATCT
CTGTGGCTGCGAAGGCGGCCAAGAAGAAAAAGAAAAAGGGCGGTGGCGGG
AAAAAGAAGAAGAAATGATGTATTCGGGGTCGGAGTGCGTAGAACATGCG
AGAGGATATGTGCGTGGATGAGACCGCGCCCGAAAGATGCATGTCAGCGT
GTAGAACGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16253:518..1427-

>mRNA_Ecto-sp13_S_contig16253.4537.1 ID=mRNA_Ecto-sp13_S_contig16253.4537.1|Name=mRNA_Ecto-sp13_S_contig16253.4537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16253:518..1427- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGAAGCTCTGGTCGGAGGGGAGGGCCTTAACCCCGCGCTGGTGGA
GCGTGGCAGCAAGAAGCTTCAGGAGTTCCAAAAGGAACTGAAGGTGCTGG
CGGAGAAAGATACGGCGGACAAGGACAAGGCCATCTCTGTGGCTGCGAAG
GCGGCCAAGAAGAAAAAGAAAAAGGGCGGTGGCGGGAAAAAGAAGAAGAA
ATGA
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