prot_Ecto-sp13_S_contig16250.4536.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16250.4536.1
Unique Nameprot_Ecto-sp13_S_contig16250.4536.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length306
Homology
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 1.590e-154
Identity = 264/305 (86.56%), Postives = 268/305 (87.87%), Query Frame = 0
Query:    1 MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVLLRXXXXXXXXXXXXXXXXXXXXXXXXTLSLFTARVLSLRPAKGSYGXXXXSFKAAAAGAGRIGCNGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR 305
            MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGG+G      HAS SR QQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN   L               GD ATEHREYLPQIWQRAVTFRVLL+ XXXXXXXXXXXXXXXXXXXXXX  LSLFTARVLSLR AKG+YG    SFKAAAAGAGR+G  GAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR
Sbjct:   77 MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNGKDL---------------GDAATEHREYLPQIWQRAVTFRVLLQRXXXXXXXXXXXXXXXXXXXXXX-ALSLFTARVLSLRLAKGNYGGGGGSFKAAAAGAGRVGRYGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR 365          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.000e-72
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKM 124
            MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDK+
Sbjct:   77 MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A068VDW2_COFCA (RECA_2 domain-containing protein n=12 Tax=Coffea TaxID=13442 RepID=A0A068VDW2_COFCA)

HSP 1 Score: 75.5 bits (184), Expect = 6.180e-12
Identity = 61/214 (28.50%), Postives = 102/214 (47.66%), Query Frame = 0
Query:    6 GGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAV-------VVVDGMGSFFWQDKMAQSC--GG---EAVSMQGI---VAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSS---NSRGDVATEHREYLPQIWQRAVTFRV 201
            GG ER AVF D D R  +LR  +LLK K+    +  +KS                    Q Q D E +   C+RR   +R     E LA ++ +  +L  +  +       +V+D +G+F+W D+   S   GG   +++S+Q +   V + L +L +  P+++ A KN++     +G  +T+     N+      +HREY+P +WQ  VT R+
Sbjct:   79 GGMERLAVFVDLDCRFDVLRFSRLLKHKLIQANSNDMKS--------------------QTQYDKE-LFAECMRRFLYIRCYNSLEFLATLKTMNKQLQKQKDIQGVGVHLLVLDSIGAFYWMDRALPSLLVGGSNRKSLSLQIVMENVVQDLQKLLLVHPLLVLATKNSI-----SGDKSTADELMRNTSSGPRPKHREYMPSVWQSFVTHRI 266          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI000F6079A6 (DNA repair protein XRCC2 homolog isoform X2 n=1 Tax=Coffea eugenioides TaxID=49369 RepID=UPI000F6079A6)

HSP 1 Score: 73.6 bits (179), Expect = 2.750e-11
Identity = 58/207 (28.02%), Postives = 99/207 (47.83%), Query Frame = 0
Query:    6 GGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAV-------VVVDGMGSFFWQDKMAQSC--GG---EAVSMQGI---VAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSS---NSRGDVATEHREYLPQIWQ 194
            GG ER AVF D D R  +LR  +LLK K+    +  +KS                    Q Q D E++   C+RR   +R     E LA ++ +  +L  +  +       +V+D +G+F+W D+   S   GG   +++S+Q +   V + L +L +  P+++ A KN++     +G  +T+     N+      +HREY+P +WQ
Sbjct:   79 GGMERLAVFVDLDCRFDVLRFSRLLKHKLIQANSNDMKS--------------------QTQYD-EELFAECMRRFLYIRCYNSLEFLATLKTMNNQLQKQKDIQGVGVHLLVLDSIGAFYWMDRALPSLLVGGSNRKSLSLQSVMENVVQDLQKLLLVHPLLVLATKNSI-----SGDKSTADELMRNTSSGPRPKHREYMPSVWQ 259          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: D8SIY5_SELML (RECA_2 domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SIY5_SELML)

HSP 1 Score: 70.1 bits (170), Expect = 6.660e-10
Identity = 65/217 (29.95%), Postives = 97/217 (44.70%), Query Frame = 0
Query:    6 GGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELG------HRPAV--VVVDGMGSFFWQDKMAQSCGGEAVSMQGI--------VAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVAT--EHREYLPQIWQRAVTFRVLLR 204
            GG E   + FD DGR  I RL  +LK +I  N   +  +AS  I                L+   E+VL   LRR   +R    FE LA+++ L  +        H  AV  V++DG+GSF+W D M+ SC     S + +        + + L  L   +  ++ A K  L+ P             R  +A+  ++REY+P  WQR VT R+ L+
Sbjct:  143 GGSEAVVLMFDLDGRFDIARLTSVLKARI--NAAHKDDTASNSI---------------CLEEQGEEVLRASLRRFYCLRCFKSFEFLASLKSLHIQSSRISQEHHGKAVQLVLIDGIGSFYWLDWMS-SCAAAYTSRRTLGVQRFSELIVQELRNLRNTKLFLVLATKALLYAPP-----------KRKAIASRIQYREYMPAAWQRFVTHRLFLQ 330          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: B3RU80_TRIAD (RECA_2 domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU80_TRIAD)

HSP 1 Score: 67.4 bits (163), Expect = 3.380e-9
Identity = 47/208 (22.60%), Postives = 92/208 (44.23%), Query Frame = 0
Query:    5 LGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVAT-------EHREYLPQIWQRAVTFRVLL 203
            + G     V+ D D   ++LRL  +L+ +                        A       +    E+ +  CL R  ++R   + +L+ ++ +L + +   P   ++++DG+GSF+WQDK + S G + +       K +  L  E  +++ A K+A+     N     + S  R D+A+       +H EY+P +W++ V +R +L
Sbjct:   73 MNGRSMSVVYIDCDYHFNLLRLMSILEQRYCK---------------------ACQGSNATMVKHSEEFIRKCLERFYIIRCDTIHQLITSLHLLEYSISSNPDIGIMLIDGIGSFYWQDKFSSSSGVDQL------CKIVKYLCDEHNLIVLATKSAIRKQFENSRL-ANKSRLRNDIASNYNSTHSKHMEYMPNVWRKLVKYRYIL 252          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A3B4DFJ9_PYGNA (X-ray repair cross complementing 2 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4DFJ9_PYGNA)

HSP 1 Score: 66.2 bits (160), Expect = 8.920e-9
Identity = 55/216 (25.46%), Postives = 95/216 (43.98%), Query Frame = 0
Query:    1 MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAV--VVVDGMGSFFWQDKMAQSCGGEAVSMQGI----VAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEH--------REYLPQIWQRAVTFRVL 202
            +P   GG E   VF D D    +LRL  +L+ +++        SA                     +S+ E+ +  CLRRL VV  +   +LL  +  L      RPA+  +V+D + +F+W D+   S GGE+++ Q       A+ L +   +  +V+FA  +A+     +   +T   +S    +T          + YL + WQR +T R++
Sbjct:   67 LPKDSGGLEVEVVFIDTDYHFDMLRLVSILEARLTPTAEENADSA---------------------ESETEEAVRSCLRRLSVVHCSSSVQLLLTLHYLEGTFCSRPALCLLVIDSISAFYWVDR---SSGGESLARQEANLRKCAELLNKFRRDYGIVVFATTHAIMRNYSSAAGSTPHGSSEASGSTPSWRNFTDFDKPYLCRTWQRILTQRLV 258          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A8B9H4A6_ASTMX (X-ray repair cross complementing 2 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9H4A6_ASTMX)

HSP 1 Score: 64.7 bits (156), Expect = 3.020e-8
Identity = 54/213 (25.35%), Postives = 99/213 (46.48%), Query Frame = 0
Query:    1 MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAV--VVVDGMGSFFWQDKMAQSCGGEAVSMQGI----VAKALVRLTMERPVVLFAAKNAL---FLPRGNGGSNTSSSNS--RGDVATEHREYLPQIWQRAVTFRVL 202
            +P   GG E   VF D D    +LRL  +L+ +++                      A+       +S+ E+ +  CLRRL V+  +   +LL  +  L   +  RP++  +V+D + +F+W D+   S GGE+++ Q       A+ L +L  +  +V+FA  +A+   +    +G S  S S    + +V    + YL + WQ+ +T R++
Sbjct:   67 LPKDSGGLEVEVVFVDTDYHFDMLRLVSILETRLTG---------------------AADENADGSESETEEAVRCCLRRLSVIHCSSSVQLLLTLHYLEGTICSRPSLCLLVIDSISAFYWMDR---SSGGESLARQESNLRKCAELLNKLRRDYGIVVFATAHAVMRNYSSAAHGSSEPSGSTPSWKKNVMDFDKPYLCRTWQKILTHRLV 255          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI000D1C81AE (DNA repair protein XRCC2 homolog isoform X1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C81AE)

HSP 1 Score: 62.8 bits (151), Expect = 1.880e-7
Identity = 61/209 (29.19%), Postives = 91/209 (43.54%), Query Frame = 0
Query:    6 GGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELG------HRPAV--VVVDGMGSFFWQDKMAQSCGGEAVSMQGI--------VAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVAT--EHREYLPQIWQRA 196
            GG E   + FD DGR  I RL  +LK +I  N   +  +AS  I                L+   E+VL   LRR   +R    FE LA+++ L  +        H  AV  V++DG+GSF+W D M+ SC     S + +        + + L  L   +  ++ A K  L+ P             R  +A+  ++REY+P  WQ A
Sbjct:  143 GGSEAVVLMFDLDGRFDIARLTSVLKARI--NEAHKDDTASNSI---------------CLEEQGEEVLRASLRRFYCLRCFKSFEFLASLKSLHIQSSRISQEHHGKAVQLVLIDGIGSFYWLDWMS-SCAAAYTSRRTLGVQRFSELIVQELRNLRNTKLFLVLATKALLYAPP-----------KRKAIASRIQYREYMPAAWQNA 322          
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: W7U480_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U480_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.740e-6
Identity = 39/132 (29.55%), Postives = 62/132 (46.97%), Query Frame = 0
Query:   83 VVRPAGLFELLAAIEVLRFELGH-----RPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGN---GGSNTSSSNSRGDV---ATEHREYLPQIWQRAVTFRVLL 203
            +VR     E  + +E L+++L        P +VV+D +GS F++ K A+SC         ++A+ + R+   + V + A K ALF  +     GG         G       EH+EY+P  W R VT R+ L
Sbjct:  211 LVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE1.590e-15486.56Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI1.000e-7299.19Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A068VDW2_COFCA6.180e-1228.50RECA_2 domain-containing protein n=12 Tax=Coffea T... [more]
UPI000F6079A62.750e-1128.02DNA repair protein XRCC2 homolog isoform X2 n=1 Ta... [more]
D8SIY5_SELML6.660e-1029.95RECA_2 domain-containing protein n=3 Tax=Selaginel... [more]
B3RU80_TRIAD3.380e-922.60RECA_2 domain-containing protein n=2 Tax=Trichopla... [more]
A0A3B4DFJ9_PYGNA8.920e-925.46X-ray repair cross complementing 2 n=2 Tax=Serrasa... [more]
A0A8B9H4A6_ASTMX3.020e-825.35X-ray repair cross complementing 2 n=2 Tax=Astyana... [more]
UPI000D1C81AE1.880e-729.19DNA repair protein XRCC2 homolog isoform X1 n=1 Ta... [more]
W7U480_9STRA3.740e-629.55Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..229
e-value: 1.2E-14
score: 56.6
IPR030547DNA repair protein XRCC2PANTHERPTHR46644FAMILY NOT NAMEDcoord: 4..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16250contigEcto-sp13_S_contig16250:401..3649 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16250.4536.1mRNA_Ecto-sp13_S_contig16250.4536.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16250 269..3885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16250.4536.1 ID=prot_Ecto-sp13_S_contig16250.4536.1|Name=mRNA_Ecto-sp13_S_contig16250.4536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIG
GGGGTTHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLR
FELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMER
PVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFR
VLLRRRQKRPPSPRPPPQSSGGGGGGGGTLSLFTARVLSLRPAKGSYGGG
GGSFKAAAAGAGRIGCNGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGE
GWEGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030547XRCC2