mRNA_Ecto-sp13_S_contig16250.4536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16250.4536.1
Unique NamemRNA_Ecto-sp13_S_contig16250.4536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 523 bits (1348), Expect = 2.350e-183
Identity = 305/348 (87.64%), Postives = 309/348 (88.79%), Query Frame = 1 
Query:    4 VPAGRGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVLLRXXXXXXXXXXXXXXXXXXXXXXXXTLSLFTARVLSLRPAKGSYGXXXXSFKAAAAGAGRIGCNGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR 1047
            VPAG G SKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGG+G      HAS SR QQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN   L               GD ATEHREYLPQIWQRAVTFRVLL+ XXXXXXXXXXXXXXXXXXXXXX  LSLFTARVLSLR AKG+YG    SFKAAAAGAGR+G  GAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR
Sbjct:   34 VPAGSGSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNGKDL---------------GDAATEHREYLPQIWQRAVTFRVLLQRXXXXXXXXXXXXXXXXXXXXXX-ALSLFTARVLSLRLAKGNYGGGGGSFKAAAAGAGRVGRYGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR 365
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 2.830e-102
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 1 
Query:    4 VPAGRGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKM 504
            VPAG GGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDK+
Sbjct:   34 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI001CF6073B (DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6073B)

HSP 1 Score: 115 bits (287), Expect = 2.220e-25
Identity = 84/241 (34.85%), Postives = 127/241 (52.70%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVL 738
            +D G   G+VVELYG  G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  +++  T     ++ GG G       A S+    + SD E  L  CL RL VV  +   +LL  +  L   L  RP  A+V++D + +F+W D+     GG +++ Q       A+ L RL  +  + +FA  +A+   R   G ++SS++S  D     R YL + WQR VT R+L
Sbjct:   28 EDGGPDHGEVVELYGTEGTGKTELLYHLLCRCVLPVAAGGLEVDVVFVDTDYSLDMLRLVSILDSRLNAGTHTHAVASEGGSGP------ALSTSSPSVASD-EAALRSCLARLLVVHCSSSSQLLLTLHFLETSLSSRPGLALVLIDSISAFYWLDRCE---GGASIAKQEEKLSKCAELLGRLLRDYRITVFATCHAI--RRSYSGPSSSSASSESD-----RPYLCRPWQRLVTHRLL 251
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A6P8V3Q7_GYMAC (DNA repair protein XRCC2 isoform X1 n=6 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8V3Q7_GYMAC)

HSP 1 Score: 107 bits (267), Expect = 1.450e-22
Identity = 79/240 (32.92%), Postives = 122/240 (50.83%), Query Frame = 1 
Query:   37 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVL 738
            D G   G+VVELYGP G+GK+E+L ++++RC++P   GG E   VF D D  L +LRL  +L  +++  T  Q +S               S+R        E++L  CL RL VV  +   +LL  +  L   L  RP  A++++D + +F+W D+     GG +V+ Q       A+ L RL  +  + +FA  +A+   R   G ++ SS      +   R YL + WQR VT R+L
Sbjct:   29 DGGPEPGEVVELYGPEGTGKTELLYHLLSRCLLPLSAGGLEVDVVFMDTDYSLDMLRLVSILDSRLNAGTHQQRRSIQ------------VSARSSSSSGSDEELLGSCLSRLLVVHCSSSSQLLLTLHFLETTLTSRPRVALLLIDSISAFYWPDRCE---GGTSVTKQEEKLSKCAELLGRLLRDYRITVFATCHAI--RRNYSGPSSFSSXXXXXXSDIDRPYLCRPWQRLVTHRLL 251
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A671YC63_SPAAU (X-ray repair cross complementing 2 n=2 Tax=Sparidae TaxID=8169 RepID=A0A671YC63_SPAAU)

HSP 1 Score: 101 bits (252), Expect = 1.250e-20
Identity = 79/241 (32.78%), Postives = 119/241 (49.38%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVL 738
            +D G  +G+VVELYGP G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  ++  N      S S G                   SD E +L  CL RL VV  +   +LL  +  L   L  RP  A++++D + +F+WQD+     GG +++ Q       A+ L RL  +  + +FA  +A+   R   G ++S        +   R YL + WQR V  R+L
Sbjct:   28 EDGGPDQGEVVELYGPEGTGKTELLYHLLCRCVLPVASGGLEVDVVFVDTDYSLDMLRLVSILDSRL--NAARSTGSPSAG-------------------SD-EALLRHCLSRLLVVHCSSSSQLLLTLHFLETSLSSRPGLALLLIDSISAFYWQDRCE---GGASIAKQEERLSKCAELLGRLLRDYRITVFATCHAI--RRSYSGPSSSXXXXXXXXSEYDRPYLCRPWQRLVNHRLL 241
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI001F07E576 (DNA repair protein XRCC2 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E576)

HSP 1 Score: 102 bits (253), Expect = 1.490e-20
Identity = 77/256 (30.08%), Postives = 129/256 (50.39%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQ-SDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIV----AKALVRLTMERPVVLFAAKNALFLPRGN------GGSNTSSSN-------SRGDVATEHREYLPQIWQRAVTFRVLL 741
            +D G   GDVVEL+G  G+GK+E+L +++ RC++P   GG     VF D D    +LRL  +L+ +++            G G       +S  + Q    SD E  +  CL RL VV  +   +LL  +  L   +  RP  +++++D + +F+W D+   S GG++V+ Q +     ++ L RL  +  + +FA+ +A+    GN      G S+ ++S+       S    +   R+YL + WQR VT R+LL
Sbjct:   28 EDGGPNYGDVVELHGTEGTGKTELLYHLLVRCLLPEDAGGLGVEVVFLDTDHHFDMLRLVTVLEHRLAQTI---------GAGSTEEGCESSGGQGQATATSDPETRVRACLSRLSVVHCSSSAQLLLTLHFLETSMCSRPKLSLLIIDSISAFYWMDR---SGGGDSVAKQEVTLRKCSELLARLLRDYRISVFASTHAIMRNYGNWSSDRLGESSDAASSLPSWRKWSSAQASDYDRQYLCKPWQRLVTHRLLL 271
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI001BEC6CAA (DNA repair protein XRCC2 isoform X1 n=2 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BEC6CAA)

HSP 1 Score: 101 bits (251), Expect = 2.260e-20
Identity = 82/242 (33.88%), Postives = 119/242 (49.17%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEH-REYLPQIWQRAVTFRVL 738
            +D G   G+VVELYG  G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  ++  N      S S G                   SD E VL  CL RL VV      +LL  +  L   L  RP  A++++D + +F+W D+     GG +++ Q    G  A+ L RL  +  + +FA  +A+        S +  S+S     +EH R YL + WQR VT R+L
Sbjct:   42 EDGGPDHGEVVELYGAEGTGKTELLYHLLCRCVLPVATGGLEVEVVFIDTDYSLDMLRLVSILDSRL--NAARSTGSPSAG-------------------SD-EVVLRSCLSRLLVVHCPSSSQLLLTLHFLETSLSSRPGLALLLIDSISAFYWLDRCE---GGASIAKQEEKLGKCAELLGRLLRDYRITVFATCHAI------RRSYSGPSSSXXXXXSEHDRPYLCRPWQRLVTHRLL 252
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI00109FDB2F (DNA repair protein XRCC2 isoform X2 n=3 Tax=Murinae TaxID=39107 RepID=UPI00109FDB2F)

HSP 1 Score: 99.4 bits (246), Expect = 4.960e-20
Identity = 70/234 (29.91%), Postives = 113/234 (48.29%), Query Frame = 1 
Query:   55 GDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAV--VVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKA----LVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVL 738
            GDV+E +GP G+GK+E+L ++ ARC++P   GG +   +F D D    +LRL  +L+ ++S ++                                E+ +  CL RL +   +   +LL  +  L   L  +P++  ++VD + SF+W D+++   GGE+VS+Q    K     L RL  E  ++LFA   +L     +     SSS    D   +HR YL + WQR V  RV+
Sbjct:   29 GDVLEFHGPEGTGKTEMLYHLTARCILPKSAGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQSS--------------------------------EETIKLCLGRLFLAYCSSSMQLLLTLHSLEALLCSQPSLCLLIVDSLSSFYWVDRVS---GGESVSLQESTLKKCSQLLERLVAEYRLLLFATTQSLMQKGSDSTEGPSSSRHPCDGDMDHRAYLCKAWQRVVKHRVV 227
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: UPI00117BE5CE (DNA repair protein XRCC2 isoform X1 n=4 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117BE5CE)

HSP 1 Score: 100 bits (248), Expect = 5.980e-20
Identity = 78/241 (32.37%), Postives = 119/241 (49.38%), Query Frame = 1 
Query:   34 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVL 738
            KD G   G+VVEL+GP G+GK+EVL ++++RC++P   GG E   VF D D  L +LRL  +L  K++                       +S  P   Q  L      CL RL VV  +   +LL  +  L   L  RP  A++++D + +F+W D+   S GG +V+ Q       ++ L RL  +  + +FA  +A+        S++SSS S  D     R +L + WQR VT R++
Sbjct:   28 KDGGPNHGEVVELFGPEGTGKTEVLYHLLSRCILPVAAGGLEVDVVFVDTDYSLDMLRLVSILDNKLNPALC------------------GASPPPASDQGTLHS----CLSRLLVVHCSSSSQLLLTLHFLETTLSSRPGLALLLIDSVSAFYWLDR---SEGGASVAKQEEKLSKCSELLGRLLRDYRITMFATCHAIRRSHAEPSSSSSSS-SNAD-----RPFLCRSWQRLVTHRLI 237
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BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Match: A0A3Q3MX37_9TELE (X-ray repair complementing defective repair in Chinese hamster cells 2 n=4 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3MX37_9TELE)

HSP 1 Score: 99.4 bits (246), Expect = 6.460e-20
Identity = 76/240 (31.67%), Postives = 120/240 (50.00%), Query Frame = 1 
Query:   37 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFRVL 738
            D G   GDVVELYG  G+GK+E+L +++ RCV+P   GG E    F D D  L + RL  +L G++S++                   H + S         + VL  CL RL V+  +   +LL  +  L   +  RP  A++++D + +F+W D+     GG +V+ Q    G  A+ L RL  +  + + A  +A+   R + G ++SSS+        +R YL ++WQR VT R+L
Sbjct:   35 DGGPDHGDVVELYGTEGTGKTELLYHLLCRCVLPQDAGGLEAEVAFVDTDYSLDMFRLVSILDGRLSSSA------------------HLAGSG--------DSVLRSCLSRLLVLHCSSSSQLLLTLHSLETSMALRPGLALLLIDSISAFYWLDRCG---GGASVTKQEELLGKCAELLGRLLRDYRITIVATCHAI--RRTSCGPSSSSSSD------PNRPYLCRLWQRLVTHRLL 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16250.4536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE2.350e-18387.64Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI2.830e-10298.80Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001CF6073B2.220e-2534.85DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnu... [more]
A0A6P8V3Q7_GYMAC1.450e-2232.92DNA repair protein XRCC2 isoform X1 n=6 Tax=Nototh... [more]
A0A671YC63_SPAAU1.250e-2032.78X-ray repair cross complementing 2 n=2 Tax=Sparida... [more]
UPI001F07E5761.490e-2030.08DNA repair protein XRCC2 n=1 Tax=Hypomesus transpa... [more]
UPI001BEC6CAA2.260e-2033.88DNA repair protein XRCC2 isoform X1 n=2 Tax=Chelmo... [more]
UPI00109FDB2F4.960e-2029.91DNA repair protein XRCC2 isoform X2 n=3 Tax=Murina... [more]
UPI00117BE5CE5.980e-2032.37DNA repair protein XRCC2 isoform X1 n=4 Tax=Sphaer... [more]
A0A3Q3MX37_9TELE6.460e-2031.67X-ray repair complementing defective repair in Chi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16250contigEcto-sp13_S_contig16250:269..3885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score234.2
Seed ortholog evalue8.2e-59
Seed eggNOG ortholog2880.D7FPE2
Preferred nameXRCC2
Model size1286
KEGG rclassRC00561
KEGG koko:K00454,ko:K10879,ko:K17890,ko:K21052
KEGG ReactionR03626,R07864,R07869
KEGG Pathwayko00515,ko00591,ko00592,ko01100,ko01110,ko03440,ko04136,ko04138,ko04140,ko04621,map00515,map00591,map00592,map01100,map01110,map03440,map04136,map04138,map04140,map04621
KEGG ModuleM00113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000278,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001756,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007127,GO:0007131,GO:0007275,GO:0007389,GO:0007399,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009952,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010720,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035264,GO:0035282,GO:0035825,GO:0040007,GO:0042148,GO:0042623,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045003,GO:0045595,GO:0045597,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051321,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060429,GO:0060548,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1903046,GO:2000026,GO:2000269
Exons5
EggNOG free text desc.meiotic DNA recombinase assembly
EggNOG OGsKOG2859@1,KOG2859@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_004600.1
EC1.13.11.12
Cds size918
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03400,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16250.4536.1prot_Ecto-sp13_S_contig16250.4536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16250 401..3649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.1907172-UTR-Ecto-sp13_S_contig16250:268..4001681462856.1907172-UTR-Ecto-sp13_S_contig16250:268..400Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16250 269..400 +
1681462856.265413-UTR-Ecto-sp13_S_contig16250:3649..38851681462856.265413-UTR-Ecto-sp13_S_contig16250:3649..3885Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16250 3650..3885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.2086117-CDS-Ecto-sp13_S_contig16250:400..4521681462856.2086117-CDS-Ecto-sp13_S_contig16250:400..452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16250 401..452 +
1681462856.2192533-CDS-Ecto-sp13_S_contig16250:1429..15901681462856.2192533-CDS-Ecto-sp13_S_contig16250:1429..1590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16250 1430..1590 +
1681462856.2296822-CDS-Ecto-sp13_S_contig16250:1964..21201681462856.2296822-CDS-Ecto-sp13_S_contig16250:1964..2120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16250 1965..2120 +
1681462856.239701-CDS-Ecto-sp13_S_contig16250:2836..29451681462856.239701-CDS-Ecto-sp13_S_contig16250:2836..2945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16250 2837..2945 +
1681462856.2503524-CDS-Ecto-sp13_S_contig16250:3209..36491681462856.2503524-CDS-Ecto-sp13_S_contig16250:3209..3649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16250 3210..3649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16250.4536.1

>prot_Ecto-sp13_S_contig16250.4536.1 ID=prot_Ecto-sp13_S_contig16250.4536.1|Name=mRNA_Ecto-sp13_S_contig16250.4536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
MPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIG
GGGGTTHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLR
FELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMER
PVVLFAAKNALFLPRGNGGSNTSSSNSRGDVATEHREYLPQIWQRAVTFR
VLLRRRQKRPPSPRPPPQSSGGGGGGGGTLSLFTARVLSLRPAKGSYGGG
GGSFKAAAAGAGRIGCNGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGE
GWEGR*
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mRNA from alignment at Ecto-sp13_S_contig16250:269..3885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16250.4536.1 ID=mRNA_Ecto-sp13_S_contig16250.4536.1|Name=mRNA_Ecto-sp13_S_contig16250.4536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16250:269..3885+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGCCAGCAGGGAGGGGCGGCAGCAAGACCAAGGACAAGGGCGTCGG
GCGGGGGGACGTGGTGGAGCTGTACGGCCCCAGCGGTAGCGGCAAGTCGG
AGGTCTTGATCAACGTGGTCGCGCGGTGCGTGATGCCGGCTTGGCTAGGC
GGGGAGGAGCGACCGGCGGTGTTTTTCGACAACGGTGAGTTGAGCAGTCG
GGATCATGATGATGGCAACAACACCCGGGGGCGGTTTTAGAAATACGGGA
GTGCGAGCTGTGATGAAAAAAGGAAGGTCTGCGTGCCCCTCGGAAATACG
ACTACTAATAATATCGCCCGAACAACACAAAACTCCTTGAAACTCTCGAA
AGAACCAGCGACGCTTAATACGTCCACGGCGGCGGTGTGGCGGTCGGTGC
CAAAGACCTGCCTGCTTGCTGTACAATCAAATTTACCTCAAGGGGTATGA
GGTGGCGAAACGGTAATGGTTTTTCCGTCCGAAGGTGAGCTGCTGCTGCT
GTGCAGTCGTGGCTATGCCTGGTGTGTGTGCTGTGCAAGTGTGTCGCCGG
TGTATCCTCGTAACCGCGACAAATTGCTCGAGAGAGAGGCGTGTTGCTAC
TGTATTGTTTTTGGTTGTCCTGTACCGGCATTTTCACGTACGTCTGCGCC
CCGCACCGCACGACCATGCTGTAGTTTTATTTCCTTTTATGTCGCGAATA
TATAGCTATCCGGCATTACTGACCGCGATGTACATCCGTAGGATACCGCG
GTGCCACGGCCGCAGAAGACAAGAAGGATGGACGGACAGCGACCCCACCT
CTCACGCACGTCTTTGCCTGGAACCGCTCCTCTCTCTGGCCTTGTCACGT
GGTTGCGTGTGTGATATTGGGGCACCGTTGAAACGGCCGACCGATCACAC
AAGCCATGTTTTTTGTTTTTTTCAACAGACAACCACGTTGGAACCTGAGT
GAGCATGGTCATCCTGCCGCTTTCCGTGTTTTTTCCCCTTAACCGCTGCC
CCTCCTGTCTTTTCTTCCGTTCTCGTGTGGCGTGATCTACTGCCGCTGCC
GCTGCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGC
GTGCACGGACACGGTGGCACATACCTGTCGGATCGGACGACCGAACGGGC
TCGTCTCCAAGACGGGAGGCTGAGCATACTGCGACTGGAGCAGCTCCTCA
AGGGGAAGATCTCGAACAACACGACGTTTCAGGTCAAGAGCGCCTCGGGG
GGCATCGGTGGTGGAGGTGGGACGACCCACGCTTCTTCTTCACGCCCGCA
GCAGCTCCAGAGCGATTTAGAGGTAAAACGGTAACGGATTCCTTCCATAG
CGCAAACATTATGTGGGGAGTCCTCACGAAAGCAGGGCTAGTGGCCGACC
AAACCGCCTCGCTTTGGACCATGGTCGCTCGATTCGGCAAGCGGCAAGCA
AACAATCCCGTTCGTTGCGATCTCAGACCTTTCCCCCCTAGCAAATGTGG
ATTCTATGGTAAGCTCGGTTGCTCCACACGGTGTTACTCTTATGTCTTCC
TCTCTCTCTGTCTCAACGTGTGCCTCTGACTCTGTCTCCGTCTCTCTCTC
TTTCTATCGTGTGTGTGTTTGTGGATGGTTGTTGCATTCTGTTCGATGTT
TTCGCCACCCCTCCTGCCCCTTCACGCACAACGTGGCCGCGCCAAGGACG
TGTTGATTGGGTGTCTTCGGCGACTCCGAGTCGTCCGTCCCGCTGGGTTG
TTCGAGCTCCTGGCCGCAATTGAGGTGTTGAGGTTCGAGTTGGGGCACCG
GCCGGCCGTCGTGGTCGTTGACGGGATGGGCTCCTTTTTCTGGCAGGACA
AGGTGTGGTGATGATACACGACGAATGCGCAATGATTGATGACGATGGCA
ATGAGTGATGGTAGAGAGGGGGATTGTAGCCAAGGTACCACGGCACTTCT
TTTCTCATCTCTCGACTGTGGTATCAGAAAATGCACTTACAAACATAGAA
AGACCACCCGTCCGAGACAAAACATCAGTCGGGATGTGTTATCCTAGCTG
TCATCTTTTCTATCTCGTCCAGCCACACAAAGGAGATGTTTCTCTCTCGT
CCGATCACACAACGGTTGCGGCCCGAGGGCCGCGCCAAAATGATTCATTT
CTCCCTCACAAGGCCCGTCACTGCAGTAACTATGCGAAGTCAATGATATC
GTCTTGTAGTTTTTTACATAGTACCCGTGCCCGTTGCCGTTGAAAACATG
AACGAACGTGTTCGAGGGTGGTGCTCCCTGAGTCCGTGCATTGTTTTCTT
TCCCGCCTCTGCAAAATGAGTCCGTGAGGGGATAGGCCTCCGTCTAGCCG
AAGCTGAAGTGAAACCACATCGTCGCAAGCAAGCCTCAAAACGGTATTTG
GTGCGTTCTGACTCACATATGATTTCTACCATCTTCCTTGGACAAGAAAA
GCTCCCTGCGAAGCATCTGTCTGTCTGACATGGATATATGTCGTTAATGG
TTATGTGTTGTTGTTGTATGTTCCTTCTTTGCGGTCGTGACTCTCTCTGT
AACACAAAACAAGTGCAGATGGCCCAGAGCTGCGGCGGAGAGGCTGTCTC
GATGCAGGGGATCGTGGCGAAGGCCCTCGTGCGGCTAACAATGGAACGGC
CGGTAGTACTCTTCGCTGCGAAGAACGGTAAAGACCTGTAACAGGGGCTA
GGCACTCACGCTCGATCAATGGACGGGTCCTTGTTTTGGCAGAGAGAAGC
GAGGAGGAAACGTGTATAGAGAGGGGGGGGGGGCGCCAGGGGCGGGGGGG
GGAGTTGACAAGTGTGGCACCCTCATTTTTACCTGACGACTACAAGCGCT
CCACCAATCTAAAGGAGGTACACCTTTACGGTCCCCCTCCCGATCACCGA
AGAAACCTCTTCCGCCCCCCTCACGTTCATTTTTTTGTCAGCTCTGTTCT
TACCTCGAGGGAACGGTGGTAGCAACACCAGCAGCAGCAACAGCAGGGGG
GACGTGGCGACGGAACACAGGGAGTACCTCCCGCAGATATGGCAGCGCGC
CGTCACGTTCAGGGTTCTCCTGCGACGAAGACAGAAGCGCCCACCATCGC
CCCGCCCGCCTCCCCAATCGAGCGGCGGCGGCGGCGGCGGCGGGGGGACC
CTGTCGCTCTTCACGGCTCGAGTTTTGAGTCTTCGCCCAGCGAAGGGTAG
CTACGGTGGCGGAGGCGGTTCTTTTAAGGCAGCCGCAGCGGGGGCGGGGC
GAATTGGTTGTAACGGTGCGGGGGGGGACGGCGAATCGAGACCGTATTTT
TTTGTGGTGACGGATGACGGCATACACGATGTTCCTGCGGCGGCCACGCT
GGGAGAAGGGGAGGGGTGGGAGGGGCGCTGACTGCCATCATCTCTCTGGA
GACCAGAAATGGCTGCTGTTTACCTTGCTGTCCACGCGTTGTTGGATTTC
GAGGGAGGTTAGGTATGGCGTCTATACACAGTGTAAAGTATAGACTTTAC
CTACACCAAAGATCTGTGCACGGCATTTTTTTGTCGTTGTTGCAGAACTA
TAAAAAAATTAACGACCAGAAGAACATTGAAAGTTGCAACCTACTGCTGT
ACATCCAAAACAAAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16250:269..3885+

>mRNA_Ecto-sp13_S_contig16250.4536.1 ID=mRNA_Ecto-sp13_S_contig16250.4536.1|Name=mRNA_Ecto-sp13_S_contig16250.4536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16250:269..3885+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCTTGGCTAGGCGGGGAGGAGCGACCGGCGGTGTTTTTCGACAA
CGACGGGAGGCTGAGCATACTGCGACTGGAGCAGCTCCTCAAGGGGAAGA
TCTCGAACAACACGACGTTTCAGGTCAAGAGCGCCTCGGGGGGCATCGGT
GGTGGAGGTGGGACGACCCACGCTTCTTCTTCACGCCCGCAGCAGCTCCA
GAGCGATTTAGAGGACGTGTTGATTGGGTGTCTTCGGCGACTCCGAGTCG
TCCGTCCCGCTGGGTTGTTCGAGCTCCTGGCCGCAATTGAGGTGTTGAGG
TTCGAGTTGGGGCACCGGCCGGCCGTCGTGGTCGTTGACGGGATGGGCTC
CTTTTTCTGGCAGGACAAGATGGCCCAGAGCTGCGGCGGAGAGGCTGTCT
CGATGCAGGGGATCGTGGCGAAGGCCCTCGTGCGGCTAACAATGGAACGG
CCGGTAGTACTCTTCGCTGCGAAGAACGCTCTGTTCTTACCTCGAGGGAA
CGGTGGTAGCAACACCAGCAGCAGCAACAGCAGGGGGGACGTGGCGACGG
AACACAGGGAGTACCTCCCGCAGATATGGCAGCGCGCCGTCACGTTCAGG
GTTCTCCTGCGACGAAGACAGAAGCGCCCACCATCGCCCCGCCCGCCTCC
CCAATCGAGCGGCGGCGGCGGCGGCGGCGGGGGGACCCTGTCGCTCTTCA
CGGCTCGAGTTTTGAGTCTTCGCCCAGCGAAGGGTAGCTACGGTGGCGGA
GGCGGTTCTTTTAAGGCAGCCGCAGCGGGGGCGGGGCGAATTGGTTGTAA
CGGTGCGGGGGGGGACGGCGAATCGAGACCGTATTTTTTTGTGGTGACGG
ATGACGGCATACACGATGTTCCTGCGGCGGCCACGCTGGGAGAAGGGGAG
GGGTGGGAGGGGCGCTGA
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