mRNA_Ecto-sp13_S_contig16242.4530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16242.4530.1
Unique NamemRNA_Ecto-sp13_S_contig16242.4530.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16242.4530.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.410e-11
Identity = 44/55 (80.00%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:   87 MVLRHLLIASQLQLLDSPXXXXXXXXXXXXXXXVSPRARAPHPFVLPPVAQRQGE 251
            MVLRHLLIASQLQLLDSP  XXXXXX       VSPRARAPHPFVLPP AQR GE
Sbjct:    1 MVLRHLLIASQLQLLDSPPPXXXXXXQAAPLPPVSPRARAPHPFVLPPAAQRPGE 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16242.4530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDH8_9PHAE5.410e-1180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16242contigEcto-sp13_S_contig16242:2882..3280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size399
Hectar predicted targeting categorymitochondrion
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.7146873-CDS-Ecto-sp13_S_contig16242:2881..32801681462855.7146873-CDS-Ecto-sp13_S_contig16242:2881..3280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16242 2882..3280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16242.4530.1prot_Ecto-sp13_S_contig16242.4530.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16242 2882..3280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16242.4530.1

>prot_Ecto-sp13_S_contig16242.4530.1 ID=prot_Ecto-sp13_S_contig16242.4530.1|Name=mRNA_Ecto-sp13_S_contig16242.4530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
RWSVARGPRTRLRCPRATRSARTCGPSCTWSSGTCSLPASCSSWTRHRRY
RLHRRRRRLRRRCPRGRERRTLSFCPPWRSDRGRRRVVVMPPQEEEMARR
GRRRRQKLAPAKEGTTGTPSGVAAHPEEGGERG
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mRNA from alignment at Ecto-sp13_S_contig16242:2882..3280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16242.4530.1 ID=mRNA_Ecto-sp13_S_contig16242.4530.1|Name=mRNA_Ecto-sp13_S_contig16242.4530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16242:2882..3280+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGTCTGTCGCCCGAGGACCTCGAACTCGCCTCCGCTGCCCCCGTGC
TACGAGGTCCGCACGCACCTGCGGCCCATCCTGCACATGGTCCTCCGGCA
CCTGCTCATTGCCAGCCAGCTGCAGCTCTTGGACTCGCCACCGCCGTTAC
CGCCTCCACCGCCGCAGGCGGCGCCTCCGCCGCCGGTGTCCCCGCGGGCG
AGAGCGCCGCACCCTTTCGTTCTGCCCCCCGTGGCGCAGCGACAGGGGGA
GGAGGAGGGTCGTCGTCATGCCGCCTCAAGAGGAGGAGATGGCGCGGCGG
GGGCGGCGGCGGCGGCAGAAGCTAGCTCCGGCGAAGGAGGGTACAACGGG
GACACCGAGCGGGGTAGCAGCTCACCCGGAGGAGGGCGGCGAAAGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16242:2882..3280+

>mRNA_Ecto-sp13_S_contig16242.4530.1 ID=mRNA_Ecto-sp13_S_contig16242.4530.1|Name=mRNA_Ecto-sp13_S_contig16242.4530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16242:2882..3280+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGTCTGTCGCCCGAGGACCTCGAACTCGCCTCCGCTGCCCCCGTGC
TACGAGGTCCGCACGCACCTGCGGCCCATCCTGCACATGGTCCTCCGGCA
CCTGCTCATTGCCAGCCAGCTGCAGCTCTTGGACTCGCCACCGCCGTTAC
CGCCTCCACCGCCGCAGGCGGCGCCTCCGCCGCCGGTGTCCCCGCGGGCG
AGAGCGCCGCACCCTTTCGTTCTGCCCCCCGTGGCGCAGCGACAGGGGGA
GGAGGAGGGTCGTCGTCATGCCGCCTCAAGAGGAGGAGATGGCGCGGCGG
GGGCGGCGGCGGCGGCAGAAGCTAGCTCCGGCGAAGGAGGGTACAACGGG
GACACCGAGCGGGGTAGCAGCTCACCCGGAGGAGGGCGGCGAAAGGGGC
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