mRNA_Ecto-sp13_S_contig16241.4529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16241.4529.1
Unique NamemRNA_Ecto-sp13_S_contig16241.4529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16241.4529.1 vs. uniprot
Match: A0A6H5KUF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.300e-18
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:  100 MASSIDIHDAAQQGNVTAIEAYIRSGGNMYMQDKQGNPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEGCAMLLRGNTP 378
            MASSIDIHDAAQQGNVTAIEAYIR GGNMY+QDKQGNPP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   H+GCAMLLRGNTP
Sbjct:    1 MASSIDIHDAAQQGNVTAIEAYIRLGGNMYVQDKQGNPPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGHDGCAMLLRGNTP 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16241.4529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUF8_9PHAE1.300e-1890.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16241contigEcto-sp13_S_contig16241:1374..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size416
Hectar predicted targeting categoryother localisation
Exons4
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.6565886-CDS-Ecto-sp13_S_contig16241:1373..15121681462855.6565886-CDS-Ecto-sp13_S_contig16241:1373..1512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16241 1374..1512 +
1681462855.665731-CDS-Ecto-sp13_S_contig16241:1954..20401681462855.665731-CDS-Ecto-sp13_S_contig16241:1954..2040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16241 1955..2040 +
1681462855.6742775-CDS-Ecto-sp13_S_contig16241:2880..30471681462855.6742775-CDS-Ecto-sp13_S_contig16241:2880..3047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16241 2881..3047 +
1681462855.6851575-CDS-Ecto-sp13_S_contig16241:3488..35101681462855.6851575-CDS-Ecto-sp13_S_contig16241:3488..3510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16241 3489..3510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16241.4529.1prot_Ecto-sp13_S_contig16241.4529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16241 1374..3510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16241.4529.1

>prot_Ecto-sp13_S_contig16241.4529.1 ID=prot_Ecto-sp13_S_contig16241.4529.1|Name=mRNA_Ecto-sp13_S_contig16241.4529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
TLNSSGAPRGTHTRSLWWAKHRVVAAHLLFLDEMASSIDIHDAAQQGNVT
AIEAYIRSGGNMYMQDKQGNPPLHVASWHGREASVAAFLDAGVDPAALNR
LGQTPLHFARKKGHEGCAMLLRGNTPPPFRSRSSSPRQ
back to top

mRNA from alignment at Ecto-sp13_S_contig16241:1374..3512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16241.4529.1 ID=mRNA_Ecto-sp13_S_contig16241.4529.1|Name=mRNA_Ecto-sp13_S_contig16241.4529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2139bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16241:1374..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACTGAATTCCTCCGGCGCTCCCCGAGGAACACACACAAGGTCGTTGTG
GTGGGCAAAGCATCGTGTGGTCGCTGCGCATCTCTTGTTTCTCGATGAGA
TGGCGTCCAGTATCGACATTCATGACGCCGCACAGCAAGGTATGCGTACG
ATCAACCCTCAACTTAACATGCGACATGTCTGTGGGCAAGAGGAGTGTCC
GAAAGTGAAGGGGTCGTATCTCTTTTTCGTGACTTCCCGCAGACGTGACC
GAGTATCGCACTGTCGCATCTCGGAGAAATCCGAGCCACCGTACAAGAAG
ACGCACTCATTCGACGCACTCATTCTCTTCCTACCGACTAGCTCCTTTTT
GCAGTTCGAGTTTTACGGTCGAGAAATATGGCACTGATGCTTGCCAAGGC
AATAAAAAGGCGTGATCGCGTCATCTGATGTACTGAACCGTCTCAAAGCG
TTTTAAAAGTCTACAGGGTCACCGCACAAGATGCGTGCGCCTGTTCCAAC
CAAAAGAACGAACCGTGCTGATCTTCTGTAGTAAATTCTCTACCGCCGCT
TGCATGTTCCCCCGCCCCTGGCCGAGGACAGGCAATGTCACCGCCATCGA
AGCCTACATCCGTTCGGGGGGCAACATGTACATGCAGGACAAACAAGGCA
ACCCCCCTCTGCACGTGGTAAGCCCAGTTAACTACTGTACTACCGTAAGT
ACACTGTGCGGGTGTGACGTCGTCGTTTGGTGGGTGCCAAGCACGCTCAA
ATATTGCGTTGGGCCATTGATGTTTGAACAAGACCTTCGACTATACATGC
ATGAAGGCACCTCTGTTCGCCCCAATTAGGTCGGCATTTTTTGGAAGGCT
GTTGTATGATACAAAGAATTACACAACATGAAATAGACCCAGTCACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAGAAGT
CCACGTATATATGAAACAGCCTGAAGGCCCGGAATGCGGAAGTCCACGTA
TATATGAAACAGTCCACGTATATATGAAACAGCCTGAAGGCCCGGAATGC
GGAAGCACTTCGAGGCTTAGGGGGCGGGAGGAATAACCCGACGATGTTGT
TTCCATTTTCAAAAAGTCAGAGTTGGAAGACGTAAGCCTTACATGCTCAC
TGGGTCACTCCATATCGGCAAGGCCAACGTTTGCAGACCCGCTGGTTTCC
AAGAAGGAACATGCTTGCGACCACTTCGAAAATAACGTCTACTATTTCGC
GGTGTTCCAGATCTTCGCATACGAAGCATCTAGCGTGCGTAATAGCCCCG
CGTAATGTCAACTGGCAGCGACCACGATTGGGGTTGTAGCCTAAACACCC
GAAGTAATCCAAAATTTCGACGGAGAAGCTCCTTCACGCGTACGCGCGTG
CGTGCAGGCATCATGGCACGGGCGAGAAGCATCCGTCGCGGCTTTTCTTG
ACGCCGGCGTTGATCCCGCAGCGTTGAACAGACTAGGACAGACGCCGCTG
CATTTCGCCCGAAAAAAGGGGCACGAAGGCTGCGCGATGCTGCTCAGGGG
GAACACGCCACCCCCCTTCCGAAGGTGAGACCTCGGTTTGTACCGATGTT
TCCACCCATGTTTCTGCGATAGGTGAAGCAACCGTTTTCGTTCCTTTCCG
CTAGACTCGCATGAGGAATCACTAGGCGTGCCCAGGTTTGCCTGAGGGAA
ACGCTGCAAGCGCTTCAAGCTCTTGAACCGACGTTTGTGTCGTGAAGGAT
TGTGGCACGAAGGACTGACATGACGTTTAAAGACTACTTGTGCCTGAGGG
TAAGAAAAAAACATCTCTCCGGAGTTTGAACCGTACATCTCCGCACAAAA
ACCAACGACACACGAGCCCTACGCAAGTGTTGACCGTTAGTTCAGCTGTC
GTGTACTGTTCCTTGTCTTCGGAGGAGCCGACGCCAACATTCATCGATAA
AGGTGTGCGACCTCGTCGTACCCTAACCGTCTCGAACATATTCACGACGT
TGGCGCCGAGAACAGCAGGAGCAGCTCACCTAGGCAGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16241:1374..3512+

>mRNA_Ecto-sp13_S_contig16241.4529.1 ID=mRNA_Ecto-sp13_S_contig16241.4529.1|Name=mRNA_Ecto-sp13_S_contig16241.4529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16241:1374..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACTGAATTCCTCCGGCGCTCCCCGAGGAACACACACAAGGTCGTTGTG
GTGGGCAAAGCATCGTGTGGTCGCTGCGCATCTCTTGTTTCTCGATGAGA
TGGCGTCCAGTATCGACATTCATGACGCCGCACAGCAAGGCAATGTCACC
GCCATCGAAGCCTACATCCGTTCGGGGGGCAACATGTACATGCAGGACAA
ACAAGGCAACCCCCCTCTGCACGTGGCATCATGGCACGGGCGAGAAGCAT
CCGTCGCGGCTTTTCTTGACGCCGGCGTTGATCCCGCAGCGTTGAACAGA
CTAGGACAGACGCCGCTGCATTTCGCCCGAAAAAAGGGGCACGAAGGCTG
CGCGATGCTGCTCAGGGGGAACACGCCACCCCCCTTCCGAAGCAGGAGCA
GCTCACCTAGGCAG
back to top