prot_Ecto-sp13_S_contig1624.4527.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1624.4527.1
Unique Nameprot_Ecto-sp13_S_contig1624.4527.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1624.4527.1 vs. uniprot
Match: D7G0W0_ECTSI (Similar to DEK oncogene (DNA binding) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W0_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 7.380e-9
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 
Query:   72 FDGLSCGEPILGSCLCPRTPVGSSLGTM 99
            FDGLSCGEP+LGSCLCPRTP GSSLGTM
Sbjct:  306 FDGLSCGEPVLGSCLCPRTPGGSSLGTM 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1624.4527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0W0_ECTSI7.380e-992.86Similar to DEK oncogene (DNA binding) n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1624contigEcto-sp13_S_contig1624:9767..10066 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1624.4527.1mRNA_Ecto-sp13_S_contig1624.4527.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1624 9463..15472 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1624.4527.1 ID=prot_Ecto-sp13_S_contig1624.4527.1|Name=mRNA_Ecto-sp13_S_contig1624.4527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MLLCGARFRVPSAIVGVVAMTTVLRLHRDETVKHSRQRGAWWQRLMCADV
VCCGSTNLSAKVSWGMPCRSGFDGLSCGEPILGSCLCPRTPVGSSLGTM*
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