mRNA_Ecto-sp13_S_contig16237.4523.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16237.4523.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE) HSP 1 Score: 1154 bits (2985), Expect = 0.000e+0 Identity = 694/818 (84.84%), Postives = 707/818 (86.43%), Query Frame = 1
Query: 1 QPPSSAERVGQGGGSVCPPVVVAIASPLKGQGSAPSLGTRRSSDSTVGIADSPQMLPEGLKTDEEDHSGRRAAXXXXXXXXXXXXXXXXXXXXXXXTASKGEGVGPTGASGPVPPDQCRAVGGAATGAAGAGREAVGDYDNPGVLEAEAEGGLVTVVAAAEPPAAPKFSGRAEAAEQGAGDRRIGGSLLDAYREPEGNDWGELEDWHGLPGLQLANAGHKVPTLKVPPLIFRPGTVDEGDVLSLHGRPRSRKPEASSPAKYGSAEERARLRPSTAADRCTAASPEQAQAERRDVDDEDGDGERGIVVEPKMNQHGVIRATTDGRVADLDSPASGXXXXXXXXXXXXXXXXXXXXQPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSIGSTSAXXXXXXXXXXXXXXXXXXXXXRRAESRSPAPDISSPSPLYARGGSGSVRLPVNAHRRWSSGEGLYRPSSRRPSIVFEGRGEAVGGSGSGSDGVQRRKELHQRRHSVSVPSRISLSASGGPRLEGSGDGGVLRPTSSASENRRAKGRVRSRPGSMASSGISSESDTGSVVRLSDAAAPGRLRDGGGWGSTARRFDSAFGLASDTSSXXXXXXXXXXXXSGVESATPSLRRKDLVVGGDHQRLAQVFEGAAYASSEGRVSMSSSSRRNASPPLGNXXXXPVVESPEMLAWATPRPGASPPLGGVGGSSLASGSEIEASETSDWDQDADFECLPEDQAFKLTLEEPTKFGYSPGLAVAGGSAVGGDGGSXXGGSNIASPIPDGNWLPPAAPDLLRRQTAPARTPPSSS 2454
QPPSS ERVGQGGGSV PPVVVA A PLKGQGSAPSL TRRSS STVGIADSPQMLPEGLKTDEE+ SGR AA XXXXXXXXX KGEGVGPTGASGPVPPDQCRAVGGAATGAAGAGREA+GD D PG L AEAEGGLV VVAAAEPP PKF+GRAEAAEQGAGD RIGGSLLD YREPEGNDWGELEDWHGLPGLQLANAG KVPTLKVP LIFRPGTVDEGDVLSLHGRPRSR PEASSPAKYGSAEERARLRPSTAADRCTAASPEQAQAE RD+DD DGDGERG+ VEP+MNQ GVIRATT G VADLD PA G XXXXXXXXXXQPLL+SLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSS+GSTSA XXXXXXXXXXXXXXXXXXXX AESRSPA DISSPSPLYARGG GS+RLPVNAHRRWSSGEGLYRPSSRRPSIV EGRGEAVGG GSGSDGVQRRKELHQRRHSVSVPSRI LSASGG RLEGSGDG VLR TSSASENRRA GR RSRPGSM SSGISSESDTGSVVRLSDAAAPG LRDGG WGSTARRFDSAFG+ASDTS XXXXX P LRRKDLV GG+HQRLAQVFEGAAYASSEG +SMSSSSRRNASPPLGN P V S EML WATPRPGASPPLGGVGGSSLASGSEIEASETSDWDQDADFE LPEDQAFKLTLEEPTKFGYSPG+AVAGGS XX IASPIPDGNWLPPAAP LLRRQTAPARTPPSSS
Sbjct: 8 QPPSSTERVGQGGGSVWPPVVVASAFPLKGQGSAPSLVTRRSSGSTVGIADSPQMLPEGLKTDEEERSGRPAATXXXXXXXXXP---------------KGEGVGPTGASGPVPPDQCRAVGGAATGAAGAGREALGDNDTPGGLGAEAEGGLVPVVAAAEPPVPPKFAGRAEAAEQGAGDGRIGGSLLDTYREPEGNDWGELEDWHGLPGLQLANAGDKVPTLKVPSLIFRPGTVDEGDVLSLHGRPRSRNPEASSPAKYGSAEERARLRPSTAADRCTAASPEQAQAEWRDMDDADGDGERGLEVEPRMNQQGVIRATTGGDVADLDGPAGGDGGWMRRSGSXXXXXXXXXXQPLLVSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSMGSTSAAXXXXXXXXXXXXXXXXXXXXXXAESRSPAADISSPSPLYARGGGGSMRLPVNAHRRWSSGEGLYRPSSRRPSIVLEGRGEAVGGGGSGSDGVQRRKELHQRRHSVSVPSRIPLSASGGLRLEGSGDGEVLRSTSSASENRRANGRGRSRPGSMVSSGISSESDTGSVVRLSDAAAPGHLRDGGRWGSTARRFDSAFGVASDTS--------XXXXXXXXXXXXPPLRRKDLVFGGNHQRLAQVFEGAAYASSEGHISMSSSSRRNASPPLGNSSPPPGVGSLEMLTWATPRPGASPPLGGVGGSSLASGSEIEASETSDWDQDADFEGLPEDQAFKLTLEEPTKFGYSPGVAVAGGSXXXXXXXXXXXXXXIASPIPDGNWLPPAAPALLRRQTAPARTPPSSS 802
BLAST of mRNA_Ecto-sp13_S_contig16237.4523.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI) HSP 1 Score: 1068 bits (2762), Expect = 0.000e+0 Identity = 643/766 (83.94%), Postives = 653/766 (85.25%), Query Frame = 1
Query: 160 QMLPEGLKTDEEDHSGRRAAXXXXXXXXXXXXXXXXXXXXXXXTASKGEGVGPTGASGPVPPDQCRAVGGAATGAAGAGREAVGDYDNPGVLEAEAEGGLVTVVAAAEPPAAPKFSGRAEAAEQGAGDRRIGGSLLDAYREPEGNDWGELEDWHGLPGLQLANAGHKVPTLKVPPLIFRPGTVDEGDVLSLHGRPRSRKPEASSPAKYGSAEERARLRPSTAADRCTAASPEQAQAERRDVDDEDGDGERGIVVEPKMNQHGVIRATTDGRVADLDSPASGXXXXXXXXXXXXXXXXXXXXQPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSIGSTSAXXXXXXXXXXXXXXXXXXXXXRR-AESRSPAPDISSPSPLYARGGSGSVRLPVNAHRRWSSGEGLYRPSSRRPSIVFEGRGEAVGGSGSGSDGVQRRKELHQRRHSVSVPSRISLSASGGPRLEGSGDGGVLRPTSSASENRRAKGRVRSRPGSMASSGISSESDTGSVVRLSDAAAPGRLRDGGGWGSTARRFDSAFGLASDTSSXXXXXXXXXXXXSGVESATPSLRRKDLVVGGDHQRLAQVFEGAAYASSEGRVSMSSSSRRNASPPLGNXXXXPVVESPEMLAWATPRPGASPPLGGVGGSSLASGSEIEASETSDWDQDADFECLPEDQAFKLTLEEPTKFGYSPGLAVAGGSAVGGDGGSXXGGSNIASPIPDGNWLPPAAPDLLRRQTAPARTPPSSS 2454
+MLPEGLKTDEEDHSGRRAA A KGEGV PTGASGPVPPDQ RAVGGAATG AGAGREAVGDYDNPG EA+AEGGLVTVVA E PAAPKF+GRAEAAEQGAGD RIGGSLLDAYREPEGNDWGELEDWHGLPGLQLANAG +VPTLKVP LIFRPGTVDEGDVLSLHGRPRSRKPEASSPAKYGS EERARL PS AD CTAASP Q QAERRD+DDEDGDGERG+VVEP+MNQHGVIRATT GRVADLD PA G XXXXXXXXXXXXXXQPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSIGSTSAXXXXXXXXXXXXXX RR AESRSPA DISSP PLYARGG GS RLPVNAHRRWSSGEGLY PSSRRPSIV E RGE VGG GSGSDGVQRRKELHQRRHSVSVPSRI SASGG RLEGSGDGGVLRPTSSASENRRAKGRVRSRP SM SSGISSESDTGSVVRLSDAAAPG +RDGGGWG+TARRFDSAFG ASDTS XXXXXXXXX LRRKDLVVGGDHQRLAQVFEGAAYASSEGR SMSSSSRRNASPPLG XXXX EMLAWATPR GASPPLGGVGGSSLASGSEIEASETSDWDQDADFE LPEDQAF LTLEEPTKFGYSPGLAVAG XX SNIASPIPDG+WLPPAAPDLLRRQTAPA TPPSSS
Sbjct: 196 KMLPEGLKTDEEDHSGRRAATAVA-------------------AAPKGEGVAPTGASGPVPPDQSRAVGGAATGEAGAGREAVGDYDNPGGSEAKAEGGLVTVVAGEEVPAAPKFAGRAEAAEQGAGDGRIGGSLLDAYREPEGNDWGELEDWHGLPGLQLANAGDEVPTLKVPSLIFRPGTVDEGDVLSLHGRPRSRKPEASSPAKYGSGEERARLCPSAPADTCTAASPGQTQAERRDMDDEDGDGERGLVVEPRMNQHGVIRATTGGRVADLDGPAGGSGGWMRXXXXXXXXXXXXXXQPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSIGSTSAXXXXXXXXXXXXXXGSSNSPHRRGAESRSPAADISSPLPLYARGGGGSRRLPVNAHRRWSSGEGLYGPSSRRPSIVLEERGETVGGGGSGSDGVQRRKELHQRRHSVSVPSRIPPSASGGLRLEGSGDGGVLRPTSSASENRRAKGRVRSRPASMVSSGISSESDTGSVVRLSDAAAPGHVRDGGGWGNTARRFDSAFGFASDTS----XXXXXXXXXXXXXXXXXXLRRKDLVVGGDHQRLAQVFEGAAYASSEGRASMSSSSRRNASPPLGXXXXXXXXXXXEMLAWATPRAGASPPLGGVGGSSLASGSEIEASETSDWDQDADFEGLPEDQAFNLTLEEPTKFGYSPGLAVAGXXXXXXXXXXXXXASNIASPIPDGDWLPPAAPDLLRRQTAPAMTPPSSS 938
BLAST of mRNA_Ecto-sp13_S_contig16237.4523.1 vs. uniprot
Match: A0A836CHZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ5_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 3.030e-6 Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 1063 QPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVG---EEVDLSGFEDPNTSS 1221
+P+L+SLAD+T AGL+KLL+A G ++M+FD +QRWVG + VD+SGFE +T++
Sbjct: 408 EPILVSLADVTAAGLEKLLEAGGDTQMYFDSVAQRWVGGAADRVDMSGFERGSTAA 463 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16237.4523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16237.4523.1 >prot_Ecto-sp13_S_contig16237.4523.1 ID=prot_Ecto-sp13_S_contig16237.4523.1|Name=mRNA_Ecto-sp13_S_contig16237.4523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=818bp QPPSSAERVGQGGGSVCPPVVVAIASPLKGQGSAPSLGTRRSSDSTVGIAback to top mRNA from alignment at Ecto-sp13_S_contig16237:1..3146- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16237.4523.1 ID=mRNA_Ecto-sp13_S_contig16237.4523.1|Name=mRNA_Ecto-sp13_S_contig16237.4523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16237:1..3146- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16237:1..3146- >mRNA_Ecto-sp13_S_contig16237.4523.1 ID=mRNA_Ecto-sp13_S_contig16237.4523.1|Name=mRNA_Ecto-sp13_S_contig16237.4523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16237:1..3146- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |