mRNA_Ecto-sp13_S_contig16235.4522.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: D8LEB6_ECTSI (IRK_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB6_ECTSI) HSP 1 Score: 560 bits (1442), Expect = 8.910e-201 Identity = 283/295 (95.93%), Postives = 287/295 (97.29%), Query Frame = 1
Query: 1 NLEQEELGSRLGNQGGRRQSAVYWEDASASEFGFNVNGRGTDDNTDNLGYVLRFPDLLKRWDDVDGDRGTWYEKMKRRVLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPLERMVSIMRVGGGGVGEDCADEFAADKSKEAPALGRLSEGRQAPQGGLEAPTGSPPTLSGSGDAPAGNGGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 885
NLEQEELGSRLGNQGGRRQSAVYWEDASASEFG NVNGRGTDD+TDNLGYV RFPDLLKRWDDVDGDRGTWYEKMKRR+LRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRP ERM SIMRVGGGGVGEDCAD+FAAD+SKEAPALGRLSEGRQAPQGGLE P GSPP LSGSGDAPAGNGGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQ ARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA
Sbjct: 17 NLEQEELGSRLGNQGGRRQSAVYWEDASASEFGVNVNGRGTDDDTDNLGYVHRFPDLLKRWDDVDGDRGTWYEKMKRRLLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPPERMASIMRVGGGGVGEDCADDFAADRSKEAPALGRLSEGRQAPQGGLETPIGSPPVLSGSGDAPAGNGGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQ-ARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 310
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE) HSP 1 Score: 557 bits (1435), Expect = 8.540e-193 Identity = 282/295 (95.59%), Postives = 286/295 (96.95%), Query Frame = 1
Query: 1 NLEQEELGSRLGNQGGRRQSAVYWEDASASEFGFNVNGRGTDDNTDNLGYVLRFPDLLKRWDDVDGDRGTWYEKMKRRVLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPLERMVSIMRVGGGGVGEDCADEFAADKSKEAPALGRLSEGRQAPQGGLEAPTGSPPTLSGSGDAPAGNGGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 885
NLEQEELGSRLGNQGGRRQSAVYWEDASASEFGFNV+GRGTDD+TD LGYV RFPDLLKRWDDVDGDRGTWYEKMKRRVLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPLERM SIM VGGGGVGEDCADEFAAD+SKEAPALGRLSEGRQAPQGGLE P GS P +SGSGDAPAGNGGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQ ARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA
Sbjct: 481 NLEQEELGSRLGNQGGRRQSAVYWEDASASEFGFNVSGRGTDDDTDKLGYVHRFPDLLKRWDDVDGDRGTWYEKMKRRVLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPLERMASIMHVGGGGVGEDCADEFAADRSKEAPALGRLSEGRQAPQGGLETPIGSSPVVSGSGDAPAGNGGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQ-ARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 774
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A835ZBX5_9STRA (IRK_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX5_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.670e-32 Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 592 LNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 885
++A WFA+EER+AI A+++DRELEVVVI+EG DTSTGSTVQ R+SY ++++WD CVT+ DG C VDF KFHD AP +C D GF+QSYA
Sbjct: 1 MDAKLWFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQ-CRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA 97
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A7S3HDT6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDT6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 9.170e-17 Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 583 RARLNAGQW----FAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGE-DGACEVDFSKFHDTLRAPANCDDHGFIQS 879
+A ++G W + EE+ + Y++DR++E++VI+EG D +TG VQ ARHSY +I+WD++F CCV + DG +DFSKFH P++ G + S
Sbjct: 127 QAAPDSGNWSSYTWQEEEQSMVQRYLRDRQVEIIVIVEGVDAATGGMVQ-ARHSYTSSEIMWDKSFECCVEKDPVDGCTTIDFSKFHQLCDVPSDAPFAGVVHS 229
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A7S1UC37_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC37_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.130e-16 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 622 ERKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 885
E++A+ +++DRELE+VV++EG D T T+Q ARHSY W++I +D+TFA CV R +G C VDF+ FH + P D G I S+A
Sbjct: 138 EKEALREFLEDRELEIVVLVEGIDALTSCTLQ-ARHSYRWDEIEFDKTFAECVFRSAEGNCVVDFTDFHRLVDCPPCNDSFGPIPSHA 224
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A485LG44_9STRA (Aste57867_20860 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LG44_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 7.550e-12 Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 625 RKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRG-EDGACEVDFSKFHDTLRAPANC 855
++ I+ +++ ELEV+VILEGTD++TG+T+Q AR SY DI W+ TFA CV+R E +DF KFHD AP +C
Sbjct: 328 QEQIERHLKQSELEVLVILEGTDSTTGNTMQ-ARFSYATYDIKWNHTFARCVSRHPETKGALIDFDKFHDVRPAPLDC 404
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A9UNU4_MONBE (Uncharacterized protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UNU4_MONBE) HSP 1 Score: 75.1 bits (183), Expect = 1.630e-11 Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 625 RKAIDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDD 861
++ I +++ +E++ I+EG D T +TVQ ARHSY + DI++D FA CVT+G DGAC++D FHD + PA D+
Sbjct: 400 KEMIRSHLMKNNVEIIAIIEGVDPHTAATVQ-ARHSYTYRDIVFDHAFAPCVTKGSDGACQLDMYFFHDLV--PAGPDE 475
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A7R9ZSS9_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSS9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.930e-11 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 634 IDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTR-----GEDG------------------ACEVDFSKFHDTLRAPANCDDHGFI 873
+ A++QDR E+VV++EGTD TG+ VQ ARHSY D+ W++TF C+ GEDG +VDFSKFHD + P +C+ ++
Sbjct: 206 LKAFLQDRLAEIVVLVEGTDEGTGAPVQ-ARHSYTLYDLAWNKTFVSCIAPSMEDVGEDGNDGGWRLPLRQHSTEADNVVQVDFSKFHDIVDTPLDCESCAYV 307
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: A0A6G0WDP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDP0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.360e-11 Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 634 IDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGE--DGACEVDFSKFHDTLRAPANC 855
I+ ++ ELEVVVILEGTD++TG+T+Q AR SY DI W TFA CV+R +GA VDF KFHD AP +C
Sbjct: 329 IEKHLAQSELEVVVILEGTDSTTGNTMQ-ARFSYTSHDIKWHHTFARCVSRHPTTNGAL-VDFDKFHDLSPAPLDC 402
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Match: W4FPE5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPE5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.130e-11 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 634 IDAYIQDRELEVVVILEGTDTSTGSTVQQARHSYCWEDILWDRTFACCVTRGE-DGACEVDFSKFHDTLRAPAN 852
I+ +++ ELEVVVILEGTD++TG+T+Q AR SY D+ W+ TFA CV+R +DF KFHD APA+
Sbjct: 330 IERHLRRSELEVVVILEGTDSTTGNTMQ-ARFSYTAHDMSWNHTFARCVSRDPVTNGAHIDFDKFHDLRAAPAD 402 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16235.4522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16235.4522.1 >prot_Ecto-sp13_S_contig16235.4522.1 ID=prot_Ecto-sp13_S_contig16235.4522.1|Name=mRNA_Ecto-sp13_S_contig16235.4522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=296bp NLEQEELGSRLGNQGGRRQSAVYWEDASASEFGFNVNGRGTDDNTDNLGYback to top mRNA from alignment at Ecto-sp13_S_contig16235:496..2677+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16235.4522.1 ID=mRNA_Ecto-sp13_S_contig16235.4522.1|Name=mRNA_Ecto-sp13_S_contig16235.4522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16235:496..2677+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16235:496..2677+ >mRNA_Ecto-sp13_S_contig16235.4522.1 ID=mRNA_Ecto-sp13_S_contig16235.4522.1|Name=mRNA_Ecto-sp13_S_contig16235.4522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16235:496..2677+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |