mRNA_Ecto-sp13_S_contig16234.4521.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16234.4521.1
Unique NamemRNA_Ecto-sp13_S_contig16234.4521.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16234.4521.1 vs. uniprot
Match: A0A6H5J7K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K3_9PHAE)

HSP 1 Score: 454 bits (1169), Expect = 1.890e-145
Identity = 359/476 (75.42%), Postives = 369/476 (77.52%), Query Frame = 1 
Query:  271 MPNLDFSPVGPQQPPLHDRGSGEKENTDAASSPPVGSFTKKAAVAAAGSTVVRSPLESLTAGTSIVCKRDSTCKCPDCDMAAAVFGINDLRQVSGGGGIPSSPTAGVIPPPSGDGSLARSPLAGRG--DVARDDPDGALPTWTPAPAVEGEGRQEAAVMLPKPAVAVIDSPAAPPVPDSAARDVPPNAKKADMTATSSALDDERDAAFHEQPGESCGGASETAAGGETPSAARGSK---KKGWGFRMARAVFSPLSPRKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPLVETKAESTATAKPAAVSEPAAXXXXXXXXXXXXLVPPADNEMPSSACAGMGNGGKHGNTGAADCNDDLLSGDESAQGEEDQGPVEYEEGDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMDVFLGERXXXXXXXXXXXXXSGRRLSKDRFFECSSEV 1683
            MPNL FSPVGPQ PPLHDRGSGEKEN   ASSPPVGS TKKA VAAAGSTVVRSPLESLTAGTSIVCKRDSTCKCPDCDMAAAVFGINDLRQV+GGGGIPSSPTA  IPPPS   +LARSPLAG    DVARDDPDGALPTWTPAPAVEGEG QEAAVM PKPAVA +DSPAAPPVPDSAARDVPP+ KKAD+TA  SA  DERDAA H+QPGES GGASETAAGGETP+AA       KKGWGFRMARAVFSPLSPRK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VPPLVET      T +PAA            XXXXXXL PPADNE+PSSA AGMG+GGKHGNTGAAD NDDLLSGD                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                GMDVFLGER             SGRRLSKDRFFECSSEV
Sbjct:    1 MPNLAFSPVGPQHPPLHDRGSGEKENAHTASSPPVGSVTKKATVAAAGSTVVRSPLESLTAGTSIVCKRDSTCKCPDCDMAAAVFGINDLRQVAGGGGIPSSPTASGIPPPSXXXALARSPLAGGASRDVARDDPDGALPTWTPAPAVEGEGLQEAAVMPPKPAVAGVDSPAAPPVPDSAARDVPPSVKKADVTAMPSAPADERDAAVHKQPGESSGGASETAAGGETPAAASAKSAGSKKGWGFRMARAVFSPLSPRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VPPLVET------TVEPAAXXX---------XXXXXXLAPPADNEIPSSAGAGMGDGGKHGNTGAADGNDDLLSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPRDSNDTATGGAACGGMDVFLGERSAAAARRAS----SGRRLSKDRFFECSSEV 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16234.4521.1 vs. uniprot
Match: D7FRV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV0_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 4.120e-138
Identity = 357/480 (74.38%), Postives = 366/480 (76.25%), Query Frame = 1 
Query:  271 MPNLDFSPVGPQQPPLHDRGSGEKENTDAASSPPVGSFTKKAAVAAAGSTVVRSPLESLTAGTSIVCKRDSTCKCPDCDMAAAVFGINDLRQVSGGGGIPSSPTAGVIPPPSGDGSLARSPLAGRG--DVARDDPDGALPTWTPAPAVEGEGRQEAAVMLPKPAVAVIDSPAAPPVPDSAARDVPPNAKKADMTATSSALDDERDAAFHEQPGESCGGASETAAGGETPSAAR----GSKKKGWGFRMARAVFSPLSPRKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPLVETKAESTATAKPAAVSEPAAXXXXXXXXXXXXLVPPADNEMPSSACAGMGNGGKHGNTGAADCND---DLLSGDESAQGEEDQGPVEYEEGDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMDVFLGERXXXXXXXXXXXXXSGRRLSKDRFFECSSEV 1683
            MPNL FSPVGPQQPPLHDRGSGEKEN +AASSPPVGS TKKAAVA AGSTVVRSPLESL AGTSIVCKRDSTCKCPDCDMAAAVF INDLRQV GGGGIPSSPTAG IPPPSG          G    DVARDD DGALPTWTPAPA EGEGRQEAAVM PKPAVAV+DSPAA PVPDSAAR+VP NAKKADMTATSSA D E DAA H+QPGESCGGASETAAGGETP+AA     GSKKKGWGFRMARAVFSPLSPR+KQ                                   PPLVET  E +ATA          XXXXXXXXXXXX     DNE+PSSA AGMG GGKHGNTGAAD ND   DLLSGDESA                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MDVFLGERXXXXXXXXXXXX SGRRLSKDR+FECSSEV
Sbjct:    1 MPNLAFSPVGPQQPPLHDRGSGEKENANAASSPPVGSITKKAAVAPAGSTVVRSPLESLAAGTSIVCKRDSTCKCPDCDMAAAVFDINDLRQVGGGGGIPSSPTAGGIPPPSGVXXXXXXXXXGGASRDVARDDHDGALPTWTPAPAGEGEGRQEAAVMPPKPAVAVVDSPAASPVPDSAARNVPHNAKKADMTATSSAPDGEHDAAVHKQPGESCGGASETAAGGETPAAASAKSAGSKKKGWGFRMARAVFSPLSPRRKQQGDAGGDGKSGTTAALAGELDDEATAAAAG----APPLVETTVELSATAXXXXXXX---XXXXXXXXXXXXXXXXXDNEIPSSAGAGMGAGGKHGNTGAADGNDGNDDLLSGDESAXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVFLGERXXXXXXXXXXXX-SGRRLSKDRYFECSSEV 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16234.4521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7K3_9PHAE1.890e-14575.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRV0_ECTSI4.120e-13874.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16234contigEcto-sp13_S_contig16234:472..3141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1747
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_004030.1
Cds size1746
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.1282237-CDS-Ecto-sp13_S_contig16234:471..6241681462855.1282237-CDS-Ecto-sp13_S_contig16234:471..624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16234 472..624 +
1681462855.139247-CDS-Ecto-sp13_S_contig16234:1022..10791681462855.139247-CDS-Ecto-sp13_S_contig16234:1022..1079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16234 1023..1079 +
1681462855.1495864-CDS-Ecto-sp13_S_contig16234:1560..25651681462855.1495864-CDS-Ecto-sp13_S_contig16234:1560..2565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16234 1561..2565 +
1681462855.1591647-CDS-Ecto-sp13_S_contig16234:2610..31411681462855.1591647-CDS-Ecto-sp13_S_contig16234:2610..3141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16234 2611..3141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16234.4521.1prot_Ecto-sp13_S_contig16234.4521.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16234 472..3141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16234.4521.1

>prot_Ecto-sp13_S_contig16234.4521.1 ID=prot_Ecto-sp13_S_contig16234.4521.1|Name=mRNA_Ecto-sp13_S_contig16234.4521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=582bp
RRSLLYPRRARERKRERTEEEKGSTHTTELCLCFRTGLVRSSLAIEEATS
QELRGRQGDRARKKAIADIAICEAAGTRSNSDTIWEPFQNMPNLDFSPVG
PQQPPLHDRGSGEKENTDAASSPPVGSFTKKAAVAAAGSTVVRSPLESLT
AGTSIVCKRDSTCKCPDCDMAAAVFGINDLRQVSGGGGIPSSPTAGVIPP
PSGDGSLARSPLAGRGDVARDDPDGALPTWTPAPAVEGEGRQEAAVMLPK
PAVAVIDSPAAPPVPDSAARDVPPNAKKADMTATSSALDDERDAAFHEQP
GESCGGASETAAGGETPSAARGSKKKGWGFRMARAVFSPLSPRKKQQGDS
TTAAAGGKSGTTAALAGKLDDEATAAAAGGVPPLVETKAESTATAKPAAV
SEPAALAAASEPAAAAELVPPADNEMPSSACAGMGNGGKHGNTGAADCND
DLLSGDESAQGEEDQGPVEYEEGDAAAAAIGGGTCKPPVVGNTAVAASVS
SSSSSSIPGDSNDTANGGAACGGMDVFLGERSAAAAAAAARRASSGRRLS
KDRFFECSSEVRREPSDQPRLSPRGKQAMGRV
back to top

mRNA from alignment at Ecto-sp13_S_contig16234:472..3141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16234.4521.1 ID=mRNA_Ecto-sp13_S_contig16234.4521.1|Name=mRNA_Ecto-sp13_S_contig16234.4521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2670bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16234:472..3141+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGAAGCTTGCTTTACCCCAGGCGAGCCAGAGAGAGGAAGAGGGAAAG
GACAGAGGAAGAGAAGGGGAGCACACACACAACGGAGCTGTGTCTGTGCT
TTCGGACGGGCCTGGTACGTAGTTCGCTTGCAATCGAAGAAGCCACATCC
CAGGTTCGTGTGTTGATGTTGCGCAAGGGGAAGAGGGCTGGCGTCCGAGA
GAGCGAGACATGAATGCGAGCTAGAGCAGCGAGAGTGACTGATCCTCGAA
CGGAAGATAGTGCCATCTAGCCTCTTATTCTCTCGCTGCCTCTGTTGTTC
CCTATTTCCGTAGACAGCAAGGCAAGCAAGCTCGCCATCCAGCATTACAG
CAGTAGACTCGTCCATATTACTTATACAGCAGTTTTATCAACAACGCAAG
GTACCCTCGTTCCCCCTTCCCTCCCTCTTGATATCTAGCTTACGTGTGTC
GGAGACTTACCATCTGTCAGAGAGGGTACTTGTCGAGATACTCGTGTAAA
TGTCAACACGCAACTCTCTTACTGCGGTGGAATACCTCTATCGAAATTCA
GGAATTGAGAGGGAGACAGGGAGACAGAGCGAGAAAGAAAGCCATTGCTG
ATATTGCGGTAAGTCCTTCCGTGTACCGCCTTCATGCCATGGTTGCATTC
TGTAAACTCCAGCTCCCCATCAGCCTACATGGGTCCTTGATAGTACAGCA
TATGCCAGATTTTGTCTTAGGAGCTTAGTACGAAATTCTTGGTGCAGCTA
AACCATGGAAGCTGCATAGATTTGAGCTAGGTTACGCCTCCCACGTGTGT
TTGCCCATATGGGTTGGTATCCCTGCCGCGCTCCCTCTCCTGCCACGCGC
CGTGTGTTTGATGTCATTGAGCCCCCCAGTGTGGAATAATGTGTGGTGGG
GCTGAGCTCAAAGGCAGCAGAGCAATTTTAGCACGAGTCCTAAAGCCGAA
ATGGCGCACCTCTCGCACAGTGTCCTGAAAAGGCTACATTGTTCTTTCTG
TACTTGATTGTACACCTCTCATAACAACGTTCTGTCTGTGGACACCACCC
CCTCTATTGCCCCCGGATCGATGCCCTACCTTCCGTCAGATTTGTGAGGC
AGCGGGTACAAGATCGAACTCCGACACCATTTGGGAGCCGTTCCAAAACA
TGCCGAACTTGGATTTTTCTCCGGTAGGACCTCAGCAGCCTCCTCTACAC
GACCGCGGCAGCGGCGAAAAAGAGAACACTGATGCTGCCTCCTCGCCCCC
CGTCGGCAGCTTCACCAAGAAAGCCGCAGTCGCCGCCGCGGGCTCGACGG
TGGTGCGCTCGCCGCTGGAGAGCCTCACAGCGGGGACGAGTATCGTCTGC
AAGCGGGACTCTACCTGCAAGTGCCCGGACTGCGACATGGCCGCCGCAGT
GTTCGGCATCAATGACCTTCGGCAGGTGAGCGGCGGGGGTGGTATCCCGA
GCTCTCCCACCGCTGGTGTCATTCCTCCTCCAAGCGGTGATGGAAGTCTG
GCGCGGAGCCCGCTGGCCGGCAGGGGGGATGTCGCGAGGGACGACCCCGA
TGGTGCGCTGCCGACCTGGACCCCCGCCCCTGCAGTCGAAGGTGAAGGTC
GACAGGAGGCCGCGGTGATGCTCCCGAAGCCAGCCGTTGCCGTTATCGAT
TCTCCCGCCGCGCCGCCTGTGCCCGACTCCGCCGCCCGTGATGTGCCGCC
CAACGCGAAGAAGGCGGATATGACCGCGACGTCGTCTGCTCTAGACGACG
AGCGCGACGCCGCTTTTCACGAGCAGCCCGGCGAGTCATGCGGCGGAGCG
TCTGAAACGGCGGCGGGTGGTGAAACCCCATCGGCGGCGAGGGGGAGCAA
GAAGAAGGGCTGGGGGTTCAGGATGGCCCGGGCCGTGTTCTCCCCGCTAT
CGCCAAGGAAAAAGCAACAGGGAGATTCCACCACCGCCGCCGCCGGCGGT
AAGAGCGGGACTACAGCGGCGTTGGCGGGCAAGCTCGACGACGAGGCTAC
CGCGGCTGCTGCCGGCGGCGTGCCGCCGTTGGTGGAAACGAAGGCGGAGT
CGACTGCAACAGCGAAGCCGGCGGCAGTCTCGGAGCCGGCGGCAGTCTCG
GAGCCGGCGGCAGCCGTGGAGGCGGCGGCATTGTCGGAGCTGGCAGCAGC
GTCCGAGCCGGCGGCAGCAGCGGAACTGGTTCCACCGGCGGACAACGAGA
TGCCCAGTTCTGCATGTGCCGGCATGGGCAACGGTGGCAAGCACGGCAAC
ACCGGAGCGGCGGACTGCAATGACGACCTGCTCTCTGGCGACGAATCGGC
CCAGGGAGAGGAAGATCAAGGACCGGTGGAGTACGAGGAGGGGGATGCCG
CCGCTGCTGCTATCGGCGGCGGGACCTGCAAGCCGCCGGTGGTTGGCAAC
ACTGCCGTTGCCGCCAGCGTTAGCAGCAGTAGCAGCAGTAGCATCCCGGG
GGACAGCAACGACACAGCTAATGGTGGTGCTGCGTGTGGGGGTATGGATG
TGTTCTTGGGGGAGAGGTCGGCGGCGGCGGCGGCGGCGGCGGCAAGGCGG
GCATCGAGCGGGCGAAGGCTGTCGAAGGACCGATTCTTCGAGTGCAGCTC
GGAGGTGAGACGGGAACCGTCGGACCAACCACGTCTCTCCCCAAGGGGCA
AACAGGCAATGGGAAGGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16234:472..3141+

>mRNA_Ecto-sp13_S_contig16234.4521.1 ID=mRNA_Ecto-sp13_S_contig16234.4521.1|Name=mRNA_Ecto-sp13_S_contig16234.4521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16234:472..3141+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGAAGCTTGCTTTACCCCAGGCGAGCCAGAGAGAGGAAGAGGGAAAG
GACAGAGGAAGAGAAGGGGAGCACACACACAACGGAGCTGTGTCTGTGCT
TTCGGACGGGCCTGGTACGTAGTTCGCTTGCAATCGAAGAAGCCACATCC
CAGGAATTGAGAGGGAGACAGGGAGACAGAGCGAGAAAGAAAGCCATTGC
TGATATTGCGATTTGTGAGGCAGCGGGTACAAGATCGAACTCCGACACCA
TTTGGGAGCCGTTCCAAAACATGCCGAACTTGGATTTTTCTCCGGTAGGA
CCTCAGCAGCCTCCTCTACACGACCGCGGCAGCGGCGAAAAAGAGAACAC
TGATGCTGCCTCCTCGCCCCCCGTCGGCAGCTTCACCAAGAAAGCCGCAG
TCGCCGCCGCGGGCTCGACGGTGGTGCGCTCGCCGCTGGAGAGCCTCACA
GCGGGGACGAGTATCGTCTGCAAGCGGGACTCTACCTGCAAGTGCCCGGA
CTGCGACATGGCCGCCGCAGTGTTCGGCATCAATGACCTTCGGCAGGTGA
GCGGCGGGGGTGGTATCCCGAGCTCTCCCACCGCTGGTGTCATTCCTCCT
CCAAGCGGTGATGGAAGTCTGGCGCGGAGCCCGCTGGCCGGCAGGGGGGA
TGTCGCGAGGGACGACCCCGATGGTGCGCTGCCGACCTGGACCCCCGCCC
CTGCAGTCGAAGGTGAAGGTCGACAGGAGGCCGCGGTGATGCTCCCGAAG
CCAGCCGTTGCCGTTATCGATTCTCCCGCCGCGCCGCCTGTGCCCGACTC
CGCCGCCCGTGATGTGCCGCCCAACGCGAAGAAGGCGGATATGACCGCGA
CGTCGTCTGCTCTAGACGACGAGCGCGACGCCGCTTTTCACGAGCAGCCC
GGCGAGTCATGCGGCGGAGCGTCTGAAACGGCGGCGGGTGGTGAAACCCC
ATCGGCGGCGAGGGGGAGCAAGAAGAAGGGCTGGGGGTTCAGGATGGCCC
GGGCCGTGTTCTCCCCGCTATCGCCAAGGAAAAAGCAACAGGGAGATTCC
ACCACCGCCGCCGCCGGCGGTAAGAGCGGGACTACAGCGGCGTTGGCGGG
CAAGCTCGACGACGAGGCTACCGCGGCTGCTGCCGGCGGCGTGCCGCCGT
TGGTGGAAACGAAGGCGGAGTCGACTGCAACAGCGAAGCCGGCGGCAGTC
TCGGAGCCGGCGGCACTGGCAGCAGCGTCCGAGCCGGCGGCAGCAGCGGA
ACTGGTTCCACCGGCGGACAACGAGATGCCCAGTTCTGCATGTGCCGGCA
TGGGCAACGGTGGCAAGCACGGCAACACCGGAGCGGCGGACTGCAATGAC
GACCTGCTCTCTGGCGACGAATCGGCCCAGGGAGAGGAAGATCAAGGACC
GGTGGAGTACGAGGAGGGGGATGCCGCCGCTGCTGCTATCGGCGGCGGGA
CCTGCAAGCCGCCGGTGGTTGGCAACACTGCCGTTGCCGCCAGCGTTAGC
AGCAGTAGCAGCAGTAGCATCCCGGGGGACAGCAACGACACAGCTAATGG
TGGTGCTGCGTGTGGGGGTATGGATGTGTTCTTGGGGGAGAGGTCGGCGG
CGGCGGCGGCGGCGGCGGCAAGGCGGGCATCGAGCGGGCGAAGGCTGTCG
AAGGACCGATTCTTCGAGTGCAGCTCGGAGGTGAGACGGGAACCGTCGGA
CCAACCACGTCTCTCCCCAAGGGGCAAACAGGCAATGGGAAGGGTG
back to top