mRNA_Ecto-sp13_S_contig1622.4519.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE) HSP 1 Score: 209 bits (533), Expect = 2.000e-66 Identity = 100/110 (90.91%), Postives = 102/110 (92.73%), Query Frame = 3
Query: 12 DDPARACDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGTGVNAARVGGGSGGGEGVEFTGDNAV 341
DDPARACD+ EWSTGQACIVCF YEPGDRLARLPCRHVYHAQCIDEWLDRAKLP CPLCKTDLRH+TPPDDRS SIST G AGT VNAARVGGGSGGGEGVEFTGDNAV
Sbjct: 142 DDPARACDTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSGGGEGVEFTGDNAV 251
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI) HSP 1 Score: 169 bits (428), Expect = 2.440e-49 Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 3
Query: 3 AEEDDPARACDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAG 254
AEEDDPARACDS EWSTGQACIVCFG YEPGDRLARLPCRHVYHAQCIDEWLDRAKLP CPLCKTDLRH+TPPDD SISTAG
Sbjct: 239 AEEDDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAG 322
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI) HSP 1 Score: 158 bits (399), Expect = 3.700e-44 Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 3
Query: 3 AEEDDPARA-CDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAG 254
A EDDP RA DS EWSTGQACIVCFG YEPGDRLA LPCRHVYHAQCIDEWLDRAK+P CPLCKTDLRH+TPPDDRS SISTAG
Sbjct: 331 AAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAG 415
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.800e-18 Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 3
Query: 36 SREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGT 266
S WS ++CI+CFG Y GD L RLPCRH YHA+CID WLD CPLCK+ L + P + S + TA GT
Sbjct: 69 SELWSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETADGGGT 145
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 7.680e-18 Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query: 36 SREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGT 266
S WS+G++CI+CFG Y GD L RLPCRH YHA+CID WLD CPLCK+ L + P + S + G GT
Sbjct: 449 SELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIGGAGGT 525
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 3.050e-15 Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 3
Query: 42 EWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDL 203
E STG +CIVCFG Y G+ L RL C H+YHA+CIDEWLD CPLCKTD+
Sbjct: 245 EGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.240e-14 Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 3
Query: 42 EWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDL 203
E ST +CIVCFG Y G+ L RL C H+YHA+CIDEWLD CPLCKTD+
Sbjct: 252 EGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A7S0KPS9_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KPS9_9CHLO) HSP 1 Score: 67.8 bits (164), Expect = 4.010e-11 Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 3
Query: 12 DDPARACDSREWSTGQA------CIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHST 215
+D RA R ++ Q C VC E G+ LPC+HVYH +CID WL+R+KL CP+CK D+ ST
Sbjct: 194 EDARRAMTVRPYARAQGETENACCSVCLSQLENGEEAKYLPCKHVYHPECIDRWLERSKL--CPVCKRDVTAST 265
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A316U4X8_9BASI (RING-type domain-containing protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U4X8_9BASI) HSP 1 Score: 68.2 bits (165), Expect = 5.940e-11 Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 3
Query: 15 DPARACDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGT 266
+ + A D R + + C +C ++E G+R+ LPC+H++H CIDEWL + K CP C+ D+ PP + S AG A T
Sbjct: 418 ESSSAADQRLYYSADECAICLANFEDGERVRLLPCQHLFHKACIDEWLIKIKK-FCPSCRRDITVPVPPAPSAVSPGAAGEAET 500
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A2K1KK58_PHYPA (RING-type domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KK58_PHYPA) HSP 1 Score: 67.0 bits (162), Expect = 1.130e-10 Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 3
Query: 33 DSREWSTGQA-CIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCK---------TDLRHST 215
DS++ ST Q C+VC YE GD++ RLPC+H YH++CI +WL K+ CP+C +D++HST
Sbjct: 258 DSKDISTDQEQCVVCRLEYEKGDKMLRLPCKHHYHSECIQQWLQHNKV--CPVCSAEVTIESSSSDVKHST 326 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1622.4519.1 >prot_Ecto-sp13_S_contig1622.4519.1 ID=prot_Ecto-sp13_S_contig1622.4519.1|Name=mRNA_Ecto-sp13_S_contig1622.4519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp RQRRTTRPGLATRESGRRVKRASCASATTSPEIGWPACRAGTYTTHSASTback to top mRNA from alignment at Ecto-sp13_S_contig1622:15337..16324- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1622.4519.1 ID=mRNA_Ecto-sp13_S_contig1622.4519.1|Name=mRNA_Ecto-sp13_S_contig1622.4519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1622:15337..16324- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1622:15337..16324- >mRNA_Ecto-sp13_S_contig1622.4519.1 ID=mRNA_Ecto-sp13_S_contig1622.4519.1|Name=mRNA_Ecto-sp13_S_contig1622.4519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1622:15337..16324- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |