mRNA_Ecto-sp13_S_contig16218.4518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16218.4518.1
Unique NamemRNA_Ecto-sp13_S_contig16218.4518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 3.520e-133
Identity = 215/224 (95.98%), Postives = 217/224 (96.88%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETLR 672
            GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK+LRMER EGATLDVSFKPESG TS ADAESEALLRRSLEEVVLRSRYPRTVVSVIIQ VIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITA VSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSC AVGSMS EEYFACCEAASLGTTAVRSFVRLSAEQKVNREAET+R
Sbjct:    8 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQ-VIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 174 bits (441), Expect = 7.760e-51
Identity = 110/236 (46.61%), Postives = 149/236 (63.14%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVS------------GRSVL-LDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETL 669
            GR  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+P+ A ++VS++ + G  + ADAE E  +RR+LEE V  +RYPR+V+SV++Q V+ DDG+VLSAA+NA  MAL++AGVEM GM ++ T C + + S            G S L LDP  +EE    AT ++A L+   G+L+ +  G +  EE FA  EAA     AV  ++R + E KV R+   L
Sbjct:    9 GRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQ-VLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANL 243
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 169 bits (429), Expect = 2.770e-49
Identity = 101/218 (46.33%), Postives = 137/218 (62.84%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKVNR 654
            GR   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+  GATL+V+FK E G  S  D E E +LR + E +++   +PR VVS+ +Q V+ DDGA+L+ A+NA  +AL++AGV M  +  ++TC I   +    + LDP ++E   AAAT   A      G+L+    G +S E+YFAC E       +V +FVR+S E K N+
Sbjct:   10 GRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQ-VVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSI---LEDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.470e-48
Identity = 101/215 (46.98%), Postives = 136/215 (63.26%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQK 645
            GR   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   ATL+V FKPE G  S  D E E +LR++ E ++L   +PR V+SV +Q V+ DDGA+L+ A+NA  +ALL+AGV M G+  ++TC I   +    + LDP  +E   AAAT   A+     GVL+    G ++  +YFAC E    G  +V +FVR++ E K
Sbjct:   11 GRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQ-VVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTI---LEDGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETK 221
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 164 bits (414), Expect = 5.490e-47
Identity = 99/221 (44.80%), Postives = 135/221 (61.09%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAE 663
            GR   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ + ATL+V FK E G  +  D E EA+LR++ E +V    YPR V+S+ +Q V+ DDG++L+ A+NA  +ALL+AG+ M  +  ++TC I   +    + LDP + E   AAAT   A      G+L+    G +S  +YFAC E       +V SFVR+S E K  +  E
Sbjct:   11 GRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQ-VVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI---LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.120e-41
Identity = 90/220 (40.91%), Postives = 133/220 (60.45%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKVNREA 660
            GR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ + AT++V FK + G  +  D E EA+L+++ + +V    YPR V+S+ +Q V+ DDG++L+ A+NA  +ALL+AG+ M  +  ++TC I   +    + LDP   E   A A+   A      G+L+    G ++  +YFA  E       +V SFVR++ E K  + A
Sbjct:   13 GRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQ-VVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI---LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.650e-40
Identity = 92/215 (42.79%), Postives = 132/215 (61.40%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQK 645
            GR   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E    ATLDV FK E G  +  D E E +LR++ E ++L   +PRTV+S+ +Q V+ DDG++L+ ++NA  +AL++AG+ M  +  ++TC +   +    + +DP   E   A AT   A  +    +L+    G ++ E+YFAC E       +V +FVR+S E K
Sbjct:  507 GRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQ-VVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITCSV---LEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.620e-40
Identity = 93/215 (43.26%), Postives = 127/215 (59.07%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQK 645
            GR   +IRPL+ EQ +LNRADGSARF  G +SVLA+V GPA AK  R E+   A+L+V+FK E G  +  D E EA+LR++ E ++    +PR V+SV +Q V+ DDG++LS A+NA  +ALL+AG+ M  +  +VTC I   +      LD    E   A A+   A      G+L+    G +S   YFAC E       +V SFVR+S E K
Sbjct:   12 GRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQ-VVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI---LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: K3WUR4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUR4_GLOUD)

HSP 1 Score: 144 bits (362), Expect = 2.930e-39
Identity = 90/220 (40.91%), Postives = 132/220 (60.00%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKVNREA 660
            GR  N++RP A++QG L RADGSAR   GN++VLAAVYGP  AK  R E  E ATLDV FK E G  +  + E E ++R++ E V++   +PR V+S+++Q +       LS A+NA ++ALL+AGV M  +  S TC +   +   ++ LDP  AEE  + +    A  S   GVL+    G ++ E+YFAC EA    + +V +F+R+  ++K   EA
Sbjct:   10 GRAGNELRPFASDQGALFRADGSARMSHGNSTVLAAVYGPGQAKNRRNEHIEKATLDVCFKLEKGQLTSKEKEYEQIIRQTFEPVIVADDFPRAVISIVVQHL-------LSVAINAVSLALLDAGVPMLSIVTSATCGL---LPDGNLFLDPSLAEEELSTSLVTTACSSTNDGVLTSLTKGLLTEEQYFACSEACQRASESVHAFLRIVQQKKYPIEA 219
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BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Match: Q54Q83_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54Q83_DICDI)

HSP 1 Score: 143 bits (360), Expect = 9.340e-39
Identity = 84/216 (38.89%), Postives = 136/216 (62.96%), Query Frame = 1 
Query:    1 GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLGTTAVRSFVRLSAEQKV 648
            GR  N IRP+ +EQG LN+ADGSA+F Q  + VLAAVYGP    + R E+   + ++V+F P  G T+  D E E L++ ++E ++L + YPRT +SVI+Q V  DDG+++S A+NAA +ALL+AG+EM G+  SVT C     +  S+ +DP   EE  + A A+ +  S    ++  + +G+++ ++YF   + AS     + SF++L+ + ++
Sbjct:   10 GRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQ-VFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFN---NDGSIYVDPSTEEENQSKAIAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNRI 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16218.4518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI3.520e-13395.98RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA7.760e-5146.61Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A067CJ13_SAPPC2.770e-4946.33Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZII6_9STRA6.470e-4846.98Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KL27_9STRA5.490e-4744.80Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024TBK6_9STRA2.120e-4140.91Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1V9ZVY3_9STRA1.650e-4042.79U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A6G0WBP6_9STRA4.620e-4043.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
K3WUR4_GLOUD2.930e-3940.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
Q54Q83_DICDI9.340e-3938.89Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16218contigEcto-sp13_S_contig16218:2332..3963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score387.9
Seed ortholog evalue3.3e-105
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
Model size677
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons2
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
EC3.6.4.13
Cds size675
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.9487615-CDS-Ecto-sp13_S_contig16218:2331..27031681462854.9487615-CDS-Ecto-sp13_S_contig16218:2331..2703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16218 2332..2703 -
1681462854.9664688-CDS-Ecto-sp13_S_contig16218:3660..39631681462854.9664688-CDS-Ecto-sp13_S_contig16218:3660..3963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16218 3661..3963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16218.4518.1prot_Ecto-sp13_S_contig16218.4518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16218 2332..3963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16218.4518.1

>prot_Ecto-sp13_S_contig16218.4518.1 ID=prot_Ecto-sp13_S_contig16218.4518.1|Name=mRNA_Ecto-sp13_S_contig16218.4518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
GRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMER
PEGATLDVSFKPESGTTSPADAESEALLRRSLEEVVLRSRYPRTVVSVII
QQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAAVSGRSVL
LDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSHEEYFACCEAASLG
TTAVRSFVRLSAEQKVNREAETLR*
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mRNA from alignment at Ecto-sp13_S_contig16218:2332..3963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16218.4518.1 ID=mRNA_Ecto-sp13_S_contig16218.4518.1|Name=mRNA_Ecto-sp13_S_contig16218.4518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16218:2332..3963- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGCGGGCCAACCAGATCCGCCCTCTCGCGGCAGAGCAGGGCATCCT
CAACAGAGCGGACGGCTCCGCTCGCTTCGTGCAGGGCAACACCTCCGTCC
TCGCGGCCGTCTATGGGCCGGCCCCGGCCAAAGCCTTGAGGATGGAGAGG
CCAGAGGGTGCAACGTTAGATGTGAGCTTCAAGCCGGAGAGCGGGACAAC
GTCACCCGCCGATGCGGAATCGGAAGCGCTGCTGCGGAGGTCGCTGGAGG
AGGTGGTGCTGAGGTCGAGATATCCCAGGACCGTGGTGTCAGTTATCATC
CAGGTGTGCATCCATAGTTGTGTCAAAGTTGAAGGAGCGAGGTAGCGCGG
GTGAAAAGATGGCGTATTCGAAATTCAATAGCAGAGAAGCAACAGCAGTA
TACTCCTGTAGCTTTGGTGCTGGAACGCTACCGGTGAGCATTGTCCTTCG
TGTATCTACCGACCATGTCGAGAGCAACACATCGAAGGGACAACAAAAAA
CCCCGTAAATGCATGTTGAGTAATGTTGCCTCAAACGCGTACCGTCTACC
AATGCCACATACCAGCTGCTTCGGTTCTTACTCTATCGTATCTGAGTCTC
TGTGAGAGTTCATACCTGTAGCGGCTTTTCTGCGTCTGAGTCGAACTGCC
AATACAGCAGTGCTGGATCTCAAGCATAAGGCACACCTCCACATTCTAAA
TTGAAATTATAAAGGCATTTCTGGGTTCCGAAGCGGGCAGTTATACATAC
CGCCGGCGGTCATGTTCCGCTTGCGAAGCGATGATTGTACCAGTAATTGG
AAGCATGTTGCAGCTCCAATGCCGCAATGCTGCACTTGCGAGCAAGAGGT
GCTGCCCCCGTGTGGCAGCGGCATCTCGACTGAGGTTGATGACTTGCGCG
TCGTTCGGCAAGAATCGGCATTAATCCATGAACAGCGAGCCTATTGACGC
GCGCTCTGTTCTACCTTTCCCATGCGCCCAAGATAGGCAACGCCTTTATA
GATAACCAGCCACCTTGATGATACGCGTGCCTGATACAACATGCACAGTC
CGAAGCACGGCTTACGTTAGGTCGTGGTTTTTTCGACGAATTGACGCCAC
CCCAAAACATATGGTATGCATATAGTACGTTTTCTCGTTCACGCAAAACG
CACACATTGATTCATTATCAGCAGCACCCACCCACTAATAATTGTGCGCG
GTTGCCACTTGTTATTTCCGTTTTCCTAACATGCGCCAACAACTTCCAAA
ACTAAAAAAGCAGGTGATCGTTGACGACGGGGCTGTTCTGAGTGCCGCTC
TGAACGCTGCCACGATGGCCCTCCTCAACGCCGGGGTAGAGATGACGGGC
ATGGCCCTCTCGGTCACCTGCTGCATCACCGCCGCGGTCTCTGGCCGGTC
TGTGCTCTTGGACCCATGCAAGGCAGAGGAGATTGATGCCGCCGCCACCG
CCGTCGTGGCCACTCTCTCCGCCGGTGGTGGAGTCCTGTCGTGCCGCGCC
GTCGGTTCGATGAGCCACGAGGAGTATTTCGCGTGCTGCGAGGCGGCGTC
GCTGGGCACGACGGCCGTGCGATCGTTCGTGAGGCTGTCCGCAGAGCAGA
AGGTCAACCGCGAAGCAGAAACTCTCAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16218:2332..3963-

>mRNA_Ecto-sp13_S_contig16218.4518.1 ID=mRNA_Ecto-sp13_S_contig16218.4518.1|Name=mRNA_Ecto-sp13_S_contig16218.4518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16218:2332..3963- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGCGGGCCAACCAGATCCGCCCTCTCGCGGCAGAGCAGGGCATCCT
CAACAGAGCGGACGGCTCCGCTCGCTTCGTGCAGGGCAACACCTCCGTCC
TCGCGGCCGTCTATGGGCCGGCCCCGGCCAAAGCCTTGAGGATGGAGAGG
CCAGAGGGTGCAACGTTAGATGTGAGCTTCAAGCCGGAGAGCGGGACAAC
GTCACCCGCCGATGCGGAATCGGAAGCGCTGCTGCGGAGGTCGCTGGAGG
AGGTGGTGCTGAGGTCGAGATATCCCAGGACCGTGGTGTCAGTTATCATC
CAGCAGGTGATCGTTGACGACGGGGCTGTTCTGAGTGCCGCTCTGAACGC
TGCCACGATGGCCCTCCTCAACGCCGGGGTAGAGATGACGGGCATGGCCC
TCTCGGTCACCTGCTGCATCACCGCCGCGGTCTCTGGCCGGTCTGTGCTC
TTGGACCCATGCAAGGCAGAGGAGATTGATGCCGCCGCCACCGCCGTCGT
GGCCACTCTCTCCGCCGGTGGTGGAGTCCTGTCGTGCCGCGCCGTCGGTT
CGATGAGCCACGAGGAGTATTTCGCGTGCTGCGAGGCGGCGTCGCTGGGC
ACGACGGCCGTGCGATCGTTCGTGAGGCTGTCCGCAGAGCAGAAGGTCAA
CCGCGAAGCAGAAACTCTCAGATGA
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