mRNA_Ecto-sp13_S_contig16217.4517.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16217.4517.1
Unique NamemRNA_Ecto-sp13_S_contig16217.4517.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16217.4517.1 vs. uniprot
Match: D7FH60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH60_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.840e-60
Identity = 98/122 (80.33%), Postives = 103/122 (84.43%), Query Frame = 1 
Query:    1 LRLQAGAHAAADGEPRGESLHFDTSDVAEAEEPVSRRSLAATCGHWVIGKMGTADAALYPTIMVSDCARHPAFIDEDSVWFRQNCFDCEERSAIGKVTVTTETCPCSRYTFKRTSHAHAMTT 366
            L L  GAHAAADGEPR ESL FD SDV+E EEPV RRS+AATCGHWVIG+MGTADAALYP I VSDCARHPAFI+EDSVWF Q C DCEERS IGKVTVTTE CPCS  TF+RTS A AMTT
Sbjct:  126 LLLHVGAHAAADGEPRDESLDFDMSDVSEEEEPVFRRSIAATCGHWVIGRMGTADAALYPMIKVSDCARHPAFINEDSVWFGQECLDCEERSTIGKVTVTTERCPCSNKTFERTSQAQAMTT 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16217.4517.1 vs. uniprot
Match: A0A6H5JB47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB47_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.510e-19
Identity = 47/96 (48.96%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   31 ADGEPRGESLHFDTSDVAEAEEPVSRRSLAATCGHWVIGKMGTADAALYPTIMVSDCARHPAFIDEDSVWFRQNCFDCEERSAIGKVTVTTETCPC 318
            A  EP  E L  +    AE+E    RRSL ATCG+WVIGK+G  D A+YP + V+DCA  P  ID DSVWF Q   + EE  +IG+VT+  E   C
Sbjct:   82 ASNEPMDEDLEIELVSTAESE--TFRRSLTATCGYWVIGKIGDTDVAMYPMLKVADCATDPTAIDTDSVWFLQATHESEEDYSIGEVTIALENYDC 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16217.4517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH60_ECTSI1.840e-6080.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB47_9PHAE1.510e-1948.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16217contigEcto-sp13_S_contig16217:115..3441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size665
Hectar predicted targeting categoryother localisation
Exons4
Cds size237
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16217.4517.1prot_Ecto-sp13_S_contig16217.4517.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16217 1192..3163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.8467243-UTR-Ecto-sp13_S_contig16217:114..2411681462854.8467243-UTR-Ecto-sp13_S_contig16217:114..241Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16217 115..241 +
1681462854.8646955-UTR-Ecto-sp13_S_contig16217:1168..11911681462854.8646955-UTR-Ecto-sp13_S_contig16217:1168..1191Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16217 1169..1191 +
1681462854.9123447-UTR-Ecto-sp13_S_contig16217:3163..34411681462854.9123447-UTR-Ecto-sp13_S_contig16217:3163..3441Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16217 3164..3441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.8794785-CDS-Ecto-sp13_S_contig16217:1191..12301681462854.8794785-CDS-Ecto-sp13_S_contig16217:1191..1230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16217 1192..1230 +
1681462854.8905838-CDS-Ecto-sp13_S_contig16217:2227..23261681462854.8905838-CDS-Ecto-sp13_S_contig16217:2227..2326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16217 2228..2326 +
1681462854.9023168-CDS-Ecto-sp13_S_contig16217:3064..31631681462854.9023168-CDS-Ecto-sp13_S_contig16217:3064..3163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16217 3065..3163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16217.4517.1

>prot_Ecto-sp13_S_contig16217.4517.1 ID=prot_Ecto-sp13_S_contig16217.4517.1|Name=mRNA_Ecto-sp13_S_contig16217.4517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MGTADAALYPTIMVSDCARHPAFIDEDSVWFRQNCFDCEERSAIGKVTVT
TETCPCSRYTFKRTSHAHAMTTPPRPPT*
back to top

mRNA from alignment at Ecto-sp13_S_contig16217:115..3441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16217.4517.1 ID=mRNA_Ecto-sp13_S_contig16217.4517.1|Name=mRNA_Ecto-sp13_S_contig16217.4517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16217:115..3441+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGGCTCCAGGCAGGCGCGCACGCAGCCGCGGACGGCGAACCTCGCGG
CGAAAGCCTGCATTTCGACACGTCTGACGTGGCGGAGGCGGAAGAACCAG
TTTCTCGCCGGTCTCTCGCGGCAACATGTGAGCACTGCGGTCTGTGGGTG
AGAGGAGTCCCGGGGGGAGTCGCTTGAGAGTACAGTGGGCGTTTGAGGTG
GTGATTCGGCCGCGCACAGGCCAGGCTAAGTATTCGCTCGGCGAGGGGTT
CAGTGGATGTTTCGATGAAATTCCAGTATTTGTACAACTTCATCATTTTC
GTGTTTTGGGGGGGGGGGGGGGGGGCCCGGGGGCAAGGGTTTTTGGTTTT
TTTTCATTTTTTAAATATTTTCGGAGAAGGGGGTCAAAAAAAAATTTTTG
GTTTNNNNNNNNNNTTAGGTGATGGGAGGTGTTGGATTGGTTTGTTTTTT
TAGTTGATTGTTTTGTGTAGATGTTTTTTTTTTTTTGTGTGGGGGGGGGG
GGGGGGGGGGGGACACGAGGCAGAGCTAGTTGGATCTGATCGCATTATTG
AAATATTCGCAGAGATGCGTGTCAAGACATACTGTTGCGTTTTTCGAAAG
GAATCTGCCGGGGGGCATGACTTTCTCTGCCTGTCCGCAGGCATTCTTCC
CTCTACGTTCTCTCGCGCTTGCGTTGGTGTTGTCACTAACAAGGTGGGTA
GGAGGCGTTGGGTCTGGGTTGCCGACATTATAAGTGAGGTGGCGGTACGT
TCATTTGCTGGTCCGCTTTCAAACATTGCCTACCGCCGCTCGTTCGACGT
GGCACGAAAGGCTAACAACGGGAATCAGAACTGCCCTTCTCGTTGGCTAT
TCGATCGTCGATTTGTTGTCGGGCTCATGAAAACAAGGTACCGAAAGACA
AACACGATTGGAGCATCTATTTGGTGCTGTCCTCGTCATGATGCGTTCTT
CTAAGGGTATACCAACCGCGCTGCCCCCCGTCGGTAAGTCTCGAGACACA
TGACGTTTTTGAGTCGAACGCATTTCAAAAACTGGCTTCTTTCGAATCGC
GCAGGCGGCCACTGGGTGATTGGCAAGATGGGCACCGCCGACGCTGCATT
GTACCCGACGATTATGGTGAGATACAACCTATGTGCACCTGGCGATGGGG
GGGGGCGATGGAGAAGTCGGTGGTCGTAAGACACCTCATGAAATTCTGAA
GAAATGACCGCCTACTATCGGACAACCGACCACTATGTATGTTTTTTGAA
GAAGTTCAAAAATAGACCAGGTTGATGGCTGTTCCATCAACTTTGCCAAG
GGACTTTAAGCCGTCTTGTTTGCATACCTATCGATTTACCGACTTGGTCA
GACCCTGAAATGTCGAAGACTCCCCTTCGTTCTCGTGAAATACCCGAAGT
GGCCTGGCTACCTAAGTCATGTATATGGGACGACACAAGAGACTGAACAG
CACACCCCGGTGAAAATATTCCTGCTTCTACCCAAAAACGTTGCCGGGTG
TGATACTGCTGTGCAGGGTGTGTGGTATCGTATGTATGTCACCTTACCGC
ACGATCTGAGAGTTTCGTAGTTTTTTTATCACTCAGGTTCATGGCGAACA
GATGGCATTGCCTATTGCCATGCGCGGCGGTTGCTCTTGTGGGTTAGACG
GGGAAGTATCATCTTCTGTGGGTGTGTTTACCTTGTGTATCGTATTCGGC
ATGCTCTGGTCCTGTTGGTTATCCGTACAGATTTCAACGAGGGAGGTGAT
GGGATGCGGTTCTGAATCTGAAGCCGCCGTGGTCTAAGCCGGGATCCATA
TGTTTGCCAGTATTCCGCACAGGAGCGGCTACGGTTGAAGAAAGGATTGG
GACCAGCCACCCAACCTCGCTTTATCCGGGCTTCTCTTAAACCGTACCAC
TTTGGAACATTTGCCGAACTAGCCAAAATCACTCTTGTAAATCCGATTTT
CTCTTGAATACTCTCTCTTTCACCGGTAGCTGCTACTGTGCCGGGAATTC
AGGGACCCAGAAGGCACACACCCCCTGGAGCACTCCAAGTTGTGTTTTCG
TCATTTTATTGTCCTTTGCATATCGAACGTTCATCTTGCTATTGTTGTTG
TTCGGCGATCCAGGTGTCCGACTGCGCCCGCCATCCTGCCTTCATCGACG
AGGATTCTGTGTGGTTCCGCCAGAATTGCTTCGATTGCGAGGAGAGAAGC
GCGATTGGAAAGGTGGGGGGCAAAGACCAAGACGACAGAAAAGGAAAGAA
AGAAACAGCAGACAGGGAGAGAGATAGAGAGAGAGACTTGCGGGCGCCTA
AACATTCAACATGCTGCCTTACGCAAATGCATTTTGAAGGTGTGTGGTGG
CTGGAGAACGTAGAGCATACCTTTGTACTCCGTCCCACCCAAATGCCTAA
CAGCCCGAACCTTGCCGGGACCCTAACCTGCCAGGACCCTTGCATCCTCC
GGCATCGGGAATACATCCTCCGGTGCCTCGCATGGCAGTCGGTAGAAAAT
TGCATCTTTCTCTTTGTAAATGCGTCCGCTCGCGACCGCGATGTCATATC
TCCGCACCTCCATCTCCCAACTCCAATCCGCCTCTACTCCTCTAGATTCT
GCCTGCGCTCAACACACAAGTAATTCGCATCCCGCTACCCTCATCCCGAT
ATCTGTTTTTTTTTCTACCAGGATCAATGCGCCTGTTCTTGTGAACATTT
GTTTGCCTCGGTCTTTCTGCCTCTTTGCCTCGATCTTTCTGCCTCTTTAC
CTCTCTCGGCCTTATCTCTCGGTCTCTCTGTCTCATTGTCTCTCTCTTTC
TCCCTTGCCGCCCCTCTGTTAATATCTCTGTCTGCCCGTGTGTCTCTCTT
TCCTCTCCCGATATCCGTTCGTGTCCTTCCCGGTTCAACATGTCCCCCTC
CCCCCCAATCTCCCATCAACGCCTCCCTCCCTCTCTCGGGCCATTGTCAG
GTGACGGTCACCACCGAAACGTGCCCTTGCAGCAGGTACACCTTTAAGCG
CACCTCGCACGCGCATGCAATGACGACACCCCCGCGGCCGCCGACCTGAA
CCTTCCGAGCGTCACCCGCACCAAAAGCAACCGCTCGCCAGCGCGAGACA
AGGAGGTAACGGTGCCTACTCCTGCCCCAACTTTAGCGGCACCGGTCAAC
GAAACCTCCTCGTCGCCGGGGGTGGTAAGCGGTGGTGGCGTCACGGCGAG
TGATGCCAGCAGCGTGATAGAAGGGGTTGACATTGCCGTCGGCGTTTCCC
TGGGGGTGGGCGCGGCAGTGCTACTCATCGCCGGCATGGTGGCCTTCCAG
ATGAGGACGTTCCTTTGCGCCCGTGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16217:115..3441+

>mRNA_Ecto-sp13_S_contig16217.4517.1 ID=mRNA_Ecto-sp13_S_contig16217.4517.1|Name=mRNA_Ecto-sp13_S_contig16217.4517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16217:115..3441+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCACCGCCGACGCTGCATTGTACCCGACGATTATGGTGTCCGACTG
CGCCCGCCATCCTGCCTTCATCGACGAGGATTCTGTGTGGTTCCGCCAGA
ATTGCTTCGATTGCGAGGAGAGAAGCGCGATTGGAAAGGTGACGGTCACC
ACCGAAACGTGCCCTTGCAGCAGGTACACCTTTAAGCGCACCTCGCACGC
GCATGCAATGACGACACCCCCGCGGCCGCCGACCTGA
back to top