mRNA_Ecto-sp13_S_contig16211.4515.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16211.4515.1
Unique NamemRNA_Ecto-sp13_S_contig16211.4515.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16211.4515.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 599 bits (1544), Expect = 1.010e-198
Identity = 342/413 (82.81%), Postives = 348/413 (84.26%), Query Frame = 1 
Query:    1 RATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISSLDGPHPSALKPATAAAAATGLPPASAAVENSAANAGFLEEGETAAFLLPRESAEAGNRGVELQWLFTGRISEAEARADREARGLSSAGPGVEGVVAREGTPRREPRPPILRARFSAARVVYLQRFTMEQAREEXXXXXXXICLIPQLCLFRPPLXXXXXXXXXXPTTPSEDTRRGKRDGTGGDSPSAAAVPPDTAAQASGKRRGRALGVXXXXXXXXXXXXXXXXXGS--EWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEEPVLLFEDETVEDGQ 1233
            RATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISSLDGPHPSALKPATAAAA      ASA VE SAA+A FLE G+ AAFLLPR SAEAGNRGVELQWLFTGRISEAEARADREARG+SSAGP VEGV AREGTP REPRPPILRARFSAARVVYLQRFTMEQ              IP+LCLFRPPL          PTTPSEDTR G       DSPSAAA+PP TAAQASGKRRGRALGV          XXXXXXX    EWEEGEPTDFVYTGLFPGEAKGWGGREGEEEE  +LLFEDE VEDGQ
Sbjct:  285 RATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISSLDGPHPSALKPATAAAAXXXXXXASAPVEGSAADAEFLEGGDRAAFLLPRGSAEAGNRGVELQWLFTGRISEAEARADREARGISSAGPVVEGVAAREGTPGREPRPPILRARFSAARVVYLQRFTMEQ--------------IPRLCLFRPPLRRRLQPAAGNPTTPSEDTRSG-------DSPSAAALPPGTAAQASGKRRGRALGVGLGEGGMGGDXXXXXXXXXXXEWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLLLFEDEAVEDGQ 676
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BLAST of mRNA_Ecto-sp13_S_contig16211.4515.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 589 bits (1518), Expect = 4.220e-188
Identity = 353/484 (72.93%), Postives = 359/484 (74.17%), Query Frame = 1 
Query:    4 ATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISSLDGPHPSALKPATAAAAATGLPPA-SAAVENSAANAGFLEEGETAAFLLPRESAEAGNRGVELQWLFTGRISEAEARADREARGLSSAGPGVEGVVAREGTPRREPRPPILRARFSAARVVYLQRFTMEQAREEXXXXXXX--------------------------------------------------ICL-----------------------IPQLCLFRPPLXXXXXXXXXXPTTPSEDTRRGKRDGTGGDSPSAAAVPPDTAAQASGKRRGRALGVXXXXXXXXXXXXXXXXXGSEWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEEPVLLFEDETVEDGQ 1233
            ATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIIS LDGPHPSALKPATAA          SA VE+SAA+AGFLE GETAAFLLPRESAEAGNRGVELQWLF GRISEAE RA+REARGLSSAGPGVE V  REGTP REPRPPILRARFSAARVVYLQRFTMEQAREE                                                         +C                        IP+LCLFRPPL          PTTPSEDTRR K DG  GDSPS AAVPP TAAQASGKRRGRALGV      XXXXXXXXXXX SEWEEGEPTDFVYTGLFPGEAKGWGGR+G EEE PVLLFEDETVEDGQ
Sbjct: 1194 ATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISGLDGPHPSALKPATAAXXXXXXXXXXSAPVESSAADAGFLEGGETAAFLLPRESAEAGNRGVELQWLFAGRISEAEVRAEREARGLSSAGPGVEDVAPREGTPGREPRPPILRARFSAARVVYLQRFTMEQAREEDDGGSVCRRPEDSLCGSPVAALAQKAGLRWVQGCTPKLPERRRMEKACARRPIVMEWVCKDSEFHLPECSDYREGRTDALVFEIPRLCLFRPPLRRRLPPAAGNPTTPSEDTRRRKIDGASGDSPSVAAVPPGTAAQASGKRRGRALGVGLGEGGXXXXXXXXXXXXSEWEEGEPTDFVYTGLFPGEAKGWGGRQGGEEE-PVLLFEDETVEDGQ 1676
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16211.4515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI1.010e-19882.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE4.220e-18872.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16211contigEcto-sp13_S_contig16211:631..3859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1233
Hectar predicted targeting categoryother localisation
Exons4
Cds size1233
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.7277625-CDS-Ecto-sp13_S_contig16211:630..10261681462854.7277625-CDS-Ecto-sp13_S_contig16211:630..1026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16211 631..1026 -
1681462854.7379959-CDS-Ecto-sp13_S_contig16211:2282..25041681462854.7379959-CDS-Ecto-sp13_S_contig16211:2282..2504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16211 2283..2504 -
1681462854.7466059-CDS-Ecto-sp13_S_contig16211:2867..32691681462854.7466059-CDS-Ecto-sp13_S_contig16211:2867..3269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16211 2868..3269 -
1681462854.7578914-CDS-Ecto-sp13_S_contig16211:3646..38591681462854.7578914-CDS-Ecto-sp13_S_contig16211:3646..3859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16211 3647..3859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16211.4515.1prot_Ecto-sp13_S_contig16211.4515.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16211 631..3859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16211.4515.1

>prot_Ecto-sp13_S_contig16211.4515.1 ID=prot_Ecto-sp13_S_contig16211.4515.1|Name=mRNA_Ecto-sp13_S_contig16211.4515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
RATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEEL
TELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFR
QGLGRRAMECRGLLRGLLLWDRTGSASGELACIISSLDGPHPSALKPATA
AAAATGLPPASAAVENSAANAGFLEEGETAAFLLPRESAEAGNRGVELQW
LFTGRISEAEARADREARGLSSAGPGVEGVVAREGTPRREPRPPILRARF
SAARVVYLQRFTMEQAREEDDGGSSSICLIPQLCLFRPPLRRRLPPAAGN
PTTPSEDTRRGKRDGTGGDSPSAAAVPPDTAAQASGKRRGRALGVGLGEG
GMSAGDGGGDGEGSEWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEEPVL
LFEDETVEDGQ
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mRNA from alignment at Ecto-sp13_S_contig16211:631..3859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16211.4515.1 ID=mRNA_Ecto-sp13_S_contig16211.4515.1|Name=mRNA_Ecto-sp13_S_contig16211.4515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3229bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16211:631..3859- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCACCGTCGGCGCAAAGGATCTGTCGCGAGGCCTCTCCCGGCGCGA
GCGCGTGCGACAGTTCCGGCGGGAGCGAGGGCTGAACGAGAGACCCCCCG
GCGGGGAGGGCGCCGTGTGGCCGCCCGTCGACGACCCCATGGAGGAGCTC
ACCGAGCTGGTGTGGCCATCGTCGGAGCTGCCGGCGCTGGAGGTCAACAT
GTCGGTGGACGAGGTGGGGCGGGTAGACGTTGTTGTTTTTCGGCCCAGTG
GCGGCGACGGCGGGGATGTAATGACAGCTACTGCCGCCTGTGTGTGCCTT
GCTTGTGCCCGTTGCCGTGGTTTGGCTGTGGGTGTTGTTTGAGTCGACTA
TTGCTGCTGTTGTCATGGTTCCTCGTGACTTATCCCATATCCTCTTGTGT
GGTGATAACACTGCTCAACGTATTTTCCCCCTTTTTCTTGCGTCCTACGG
CCGCCGCCGCCGCTGCCGCAGGCACTGCTACTGTCCTCGTTCCTTGAAAC
CTATCCCCATAAATCTACCAAACGCCGTGCCTGGTGATGAAACCCTAACC
TAATGCCTTTCCCCCCTTTGTCTGGCCGCCACTACTGCAGGCGGCCTGCC
TGCTCTCGTTCCACGGCCGGCCGCTCTCCGAGCTCCAGCTCCGGAGGGGG
CTCACGATCGGAGTCGAGACGTTCCGGCAGGGGCTGGGCCGTCGCGCGAT
GGAGTGCCGCGGCCTGCTTCGTGGGCTTCTCCTGTGGGACAGGACCGGCT
CGGCGTCCGGAGAGCTCGCGTGCATCATCAGCAGCCTCGATGGGCCCCAC
CCCTCGGCCCTCAAGCCTGCTACGGCTGCCGCCGCCGCTACCGGGCTGCC
GCCGGCCTCTGCTGCGGTGGAGAATTCTGCTGCTAATGCCGGGTTTCTGG
AGGAGGGAGAAACGGCAGCGTTTTTGCTGCCGAGGGAGTCGGCGGAGGCG
GGGAACCGGGGGGTGGAGCTGCAGTGGCTGTTCACTGGAAGGGTAAGATG
ACCTCTTGGAGCGTGGTCTTGCGGCTAATTAGAGTTTGTGAGTGAGAGCG
TGGTCCTTGCTTTTGGGAGGGGTTGGAAGTGGACGCTGGATGGTAAAGAC
GCCGAAGGTTGCAAGGACCCACAGCTGTTTTGACGTGTGCATAGCAACGA
ACGTAGGGGACGCAGCTCTCCCGGTGCTCTGTACGCGCGCCATCTTACCC
CACCCTGGGCTGTTGGTGGTTGTTGCGACCGTAGTCGTTGCTGTCTCTTT
TGTTGAAAAATGACGACTATCGTGTCCGTCAGACAAGCCGCCATCGTCGT
CGTCTCTTGTCGGATGCCAACGATGATCCCTTGTGCATGGGCTCTTGCCC
CTCAGATTAGCGAAGCCGAGGCGCGAGCAGACCGCGAGGCGAGGGGGCTC
TCTTCGGCCGGCCCCGGTGTGGAAGGCGTCGTCGCAAGGGAGGGGACGCC
CAGGAGGGAGCCCCGCCCCCCGATCCTCAGGGCCAGATTTTCCGCCGCGC
GGGTGGTATACCTGCAGAGGTTCACAATGGAGCAGGCAAGGGAGGAGGAC
GACGGGGGGTCTAGCTCGATTTGTTTAGTCCGCGTTTCGAGCTCAAACCG
AAATTACCCTCTCAAGCTCGCAAAAAACAAGTCCAAGAAGAAATGGAGTC
GGTGGTGTGCAGCTATATCTCTTCGCGACGTGTGTACCCCCGCCCCGCCC
CGCTCCGCCCTGCTCCACAATTTACGCGTACATCCCCCCCCTCCCCCCTG
TACTGTTATCTTCTTTCCTTACCAAATTCAAGCGAGTCTCTAACTTTCCC
ACCCATCCGCTTGTCAACGTTGCTGCTGCTTCTGCTGCTTCTGCTGGCTC
TGCTGCTGTTGTTTCCGTCGTTTTGTGTTCCGACCGTGTGGATCGATGGT
CACATCGAAACGACAGTACTGCCACATCCTGCAGAGGCTGATGCCCTCCC
TCAGGTCGGTCTACCGCAGACCGGAGGACTCTCTGTGCGGCAGCCCCGTG
GCTGCACTTGCCCAGAAGGCTGGGCTCCGCTGGGTGCAGGGCTGCACCCC
CAAGCTGCCGGAGCGCCGCAGGATGGAGAAGGCCTGCGCTCGGAGGTAAC
GCATACGCGGCGTGACTGCGGGTAATAGACATACGACACAAACCAGTCGT
GATGACCCCATTCGACTGGTGGGAGGTAGCGGGCGGAGATTTTGGAAGCG
TTTTCGGGACTGACAAGGGTTTGAGGATGTGGACCTAATTTCGTGGCTGT
ATGGGTTTTGTAGCTCTCGGGTAGCGTCTGAAACCTTTAGTCGAGTATGT
TTTGCTTGCGTTGCGTGTCGTGCTCTCGATCTCTGGACTATCTCTCGCTC
ATGTCAGTACAGGCGGAGTCGAGAAAGGTAAGTGACGGTGTACTTTCACT
ATGCACGACCCCCCCCCCCGCCCGCTTCTCCCCCAACACCCGATTGCCTC
ACCAGGCCGATCGTCATGGAGTGGGTCTGCAAAGACAGCGAGTTTCACCT
CCCTGAGTGCTCGGACTACCGTGAGGGAAGGACCGATGCACTGGTGTTTG
AGGTAAGATATACTAATATGGTGTTGGAGGAAGGGGCAAAGCTTGCTGGC
ACAAATACCATTGCCTACATGTAATTGACGTAAGGGATGCTGACACTTAC
GCCACCATAACAACCACCGCGGACCATGTTTTGACCGTAAATATCACGAG
GACACACGCACGCAGGTACGCATCCACGCGCGCGTGGGCTGCTTGTCACC
CCCCCTCGCCCCCGTTATCCAACGCCATCACCGACACAAAACCCATCTTT
CTCTCTCTCTCACGTGCGTTTTTCGTCCGACAGATCCCCCAGCTCTGCCT
CTTCCGGCCACCCCTGCGCCGACGCCTACCACCCGCCGCCGGAAACCCCA
CCACTCCGTCCGAGGACACAAGAAGAGGAAAAAGAGATGGCACCGGCGGC
GACTCGCCGTCCGCGGCGGCGGTACCGCCGGACACCGCCGCTCAGGCCTC
AGGGAAGCGGAGGGGTCGCGCCCTGGGAGTGGGCCTTGGGGAGGGCGGGA
TGAGTGCCGGCGACGGCGGGGGGGACGGGGAAGGATCGGAGTGGGAAGAG
GGCGAGCCCACGGACTTCGTATACACCGGGCTCTTCCCCGGAGAGGCCAA
GGGCTGGGGAGGACGGGAGGGAGAGGAGGAGGAGGAGCCCGTGCTGCTGT
TCGAGGACGAGACCGTGGAAGATGGACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16211:631..3859-

>mRNA_Ecto-sp13_S_contig16211.4515.1 ID=mRNA_Ecto-sp13_S_contig16211.4515.1|Name=mRNA_Ecto-sp13_S_contig16211.4515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16211:631..3859- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCACCGTCGGCGCAAAGGATCTGTCGCGAGGCCTCTCCCGGCGCGA
GCGCGTGCGACAGTTCCGGCGGGAGCGAGGGCTGAACGAGAGACCCCCCG
GCGGGGAGGGCGCCGTGTGGCCGCCCGTCGACGACCCCATGGAGGAGCTC
ACCGAGCTGGTGTGGCCATCGTCGGAGCTGCCGGCGCTGGAGGTCAACAT
GTCGGTGGACGAGGCGGCCTGCCTGCTCTCGTTCCACGGCCGGCCGCTCT
CCGAGCTCCAGCTCCGGAGGGGGCTCACGATCGGAGTCGAGACGTTCCGG
CAGGGGCTGGGCCGTCGCGCGATGGAGTGCCGCGGCCTGCTTCGTGGGCT
TCTCCTGTGGGACAGGACCGGCTCGGCGTCCGGAGAGCTCGCGTGCATCA
TCAGCAGCCTCGATGGGCCCCACCCCTCGGCCCTCAAGCCTGCTACGGCT
GCCGCCGCCGCTACCGGGCTGCCGCCGGCCTCTGCTGCGGTGGAGAATTC
TGCTGCTAATGCCGGGTTTCTGGAGGAGGGAGAAACGGCAGCGTTTTTGC
TGCCGAGGGAGTCGGCGGAGGCGGGGAACCGGGGGGTGGAGCTGCAGTGG
CTGTTCACTGGAAGGATTAGCGAAGCCGAGGCGCGAGCAGACCGCGAGGC
GAGGGGGCTCTCTTCGGCCGGCCCCGGTGTGGAAGGCGTCGTCGCAAGGG
AGGGGACGCCCAGGAGGGAGCCCCGCCCCCCGATCCTCAGGGCCAGATTT
TCCGCCGCGCGGGTGGTATACCTGCAGAGGTTCACAATGGAGCAGGCAAG
GGAGGAGGACGACGGGGGGTCTAGCTCGATTTGTTTAATCCCCCAGCTCT
GCCTCTTCCGGCCACCCCTGCGCCGACGCCTACCACCCGCCGCCGGAAAC
CCCACCACTCCGTCCGAGGACACAAGAAGAGGAAAAAGAGATGGCACCGG
CGGCGACTCGCCGTCCGCGGCGGCGGTACCGCCGGACACCGCCGCTCAGG
CCTCAGGGAAGCGGAGGGGTCGCGCCCTGGGAGTGGGCCTTGGGGAGGGC
GGGATGAGTGCCGGCGACGGCGGGGGGGACGGGGAAGGATCGGAGTGGGA
AGAGGGCGAGCCCACGGACTTCGTATACACCGGGCTCTTCCCCGGAGAGG
CCAAGGGCTGGGGAGGACGGGAGGGAGAGGAGGAGGAGGAGCCCGTGCTG
CTGTTCGAGGACGAGACCGTGGAAGATGGACAG
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