mRNA_Ecto-sp13_S_contig16202.4512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16202.4512.1
Unique NamemRNA_Ecto-sp13_S_contig16202.4512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.500e-73
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            WEYGTIMASVVCRHGYTVDSSQVKWLARVMS+LDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL
Sbjct: 2238 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 2357
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 9.080e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 
Query:   89 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL
Sbjct:    1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 91
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.130e-44
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W  G I  +VVCRHGYT +SSQV  L  V+S+LD   RR FL FVTG+PRLP+GGF AL+PRLTVV+K+        PD HLPSCSTCQVYLKLPAYT +A L AKL  AI EG++HFAL
Sbjct:  223 WRTGAIAGAVVCRHGYTAESSQVAALVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTP-----RPDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFAL 337
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A2R5GSN0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.810e-37
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W+   IMA++VC+HGY   + Q++ L  V+S+LD   RR F++F+TG+PRLP+GGFG LRPRLTVV+K V       PD  LPSCSTCQVYLKLP Y+SR  L+ +L  A+ EGQ HFAL
Sbjct: 2678 WDAEVIMANIVCKHGYDARARQIRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFAL 2793
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.990e-31
Identity = 63/120 (52.50%), Postives = 80/120 (66.67%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W    ++ ++ C HGYT  S  V+ L  V+SDLD   RRQFL F TG+PRLP+GGF AL PRLT+V+K+   LPG +PD+ LPS STC  YLKLP YTS+  +  +L  AIT+G   F L
Sbjct: 2004 WTVPALLGAIRCDHGYTTSSGAVQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKP--LPGRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: Q5DF45_SCHJA (E3 ubiquitin-protein ligase n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5DF45_SCHJA)

HSP 1 Score: 116 bits (291), Expect = 5.060e-30
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W+  ++  S  C HGYT  S  +++L  +MS+   E RR F++FVTG+PRLP+GGF AL+P L +V K      G   D+HLPS  TCQ YLKLP Y+S+A + +KL +AI EGQ+ F L
Sbjct:  118 WDVQSLTQSCCCDHGYTPQSRAIRFLFEIMSEFTAEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKRET---GENADNHLPSVMTCQNYLKLPDYSSKALMLSKLLYAINEGQNAFHL 234
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A814GCM7_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814GCM7_9BILA)

HSP 1 Score: 120 bits (302), Expect = 2.320e-29
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W+   ++ S  C HGY ++S  VKWL  +M D D + RR FL+FVTG+PRLP+GGF  L P LTVV+K V+      PD++LPS  TC  YLKLP YTS+  ++ KL  AI +GQ  F L
Sbjct: 2263 WDLKVLLESTRCDHGYNLNSRAVKWLFEIMIDFDIDERRAFLQFVTGSPRLPVGGFRTLHPPLTVVRKTVE---NDNPDNYLPSVMTCVNYLKLPDYTSKDIMKTKLLTAIRDGQFAFLL 2379
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A183LWB1_9TREM (E3 ubiquitin-protein ligase n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183LWB1_9TREM)

HSP 1 Score: 114 bits (285), Expect = 2.930e-29
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W+  ++  S  C HGYT  S  ++ L  +MS+   E RR F++FVTG+PRLP+GGF AL+P L +V K      G   D HLPS  TCQ YLKLP Y+S+A + +KL +AI EGQ+ F L
Sbjct:  105 WDVQSLTQSCCCDHGYTPQSRAIRLLFEIMSEFTPEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKRET---GENADHHLPSVMTCQNYLKLPDYSSKALMLSKLLYAINEGQNAFHL 221
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A7S1G2E8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.340e-29
Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W   +I+  +VC HGY   S QV+ L  +MS+  T+ RR FLRFVTG PRLP+GGF +LRP LT+VK      PG   D  +P+C  C VYLKLPAYT    L  KL  AI +GQ+ F +
Sbjct: 2790 WNADSILPHIVCDHGYQKTSPQVQQLVSIMSEFTTQERRLFLRFVTGAPRLPMGGFASLRPPLTIVKTVPP--PGRIADEMMPTCMVCSVYLKLPAYTEPVVLRDKLHMAIRDGQESFEM 2907
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BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Match: A0A814A2Y3_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814A2Y3_9BILA)

HSP 1 Score: 119 bits (299), Expect = 5.890e-29
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 2 
Query:    2 WEYGTIMASVVCRHGYTVDSSQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 361
            W+   ++ S  C HGY ++S  VKWL  +M D D + RR FL+FVTG+PRLP+GGF  L P LTVV+K V+      PD+ LPS  TC  YLKLP YTS+  ++ KL  AI +GQ  F L
Sbjct: 2272 WDLKVLLESTRCDHGYNLNSRAVKWLFEIMIDFDIDERRAFLQFVTGSPRLPVGGFRTLHPPLTVVRKTVE---NENPDNFLPSVMTCVNYLKLPDYTSKDIMKTKLSTAIHDGQFAFLL 2388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16202.4512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2P5_9PHAE1.500e-7399.17HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4E7_ECTSI9.080e-60100.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7D6_9STRA1.130e-4464.17HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2R5GSN0_9STRA4.810e-3756.67HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea... [more]
A0A7S1CCF7_9STRA2.990e-3152.50HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
Q5DF45_SCHJA5.060e-3048.33E3 ubiquitin-protein ligase n=1 Tax=Schistosoma ja... [more]
A0A814GCM7_9BILA2.320e-2950.00E3 ubiquitin-protein ligase n=1 Tax=Didymodactylos... [more]
A0A183LWB1_9TREM2.930e-2948.33E3 ubiquitin-protein ligase n=2 Tax=Schistosoma Ta... [more]
A0A7S1G2E8_9STRA4.340e-2950.00HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A814A2Y3_9BILA5.890e-2950.00E3 ubiquitin-protein ligase n=1 Tax=Didymodactylos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16202contigEcto-sp13_S_contig16202:2199..3930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons3
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.5935776-CDS-Ecto-sp13_S_contig16202:2199..22941681462854.5935776-CDS-Ecto-sp13_S_contig16202:2199..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16202 2200..2294 -
1681462854.6025863-CDS-Ecto-sp13_S_contig16202:2997..31981681462854.6025863-CDS-Ecto-sp13_S_contig16202:2997..3198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16202 2998..3198 -
1681462854.6103096-CDS-Ecto-sp13_S_contig16202:3863..39301681462854.6103096-CDS-Ecto-sp13_S_contig16202:3863..3930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16202 3864..3930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16202.4512.1prot_Ecto-sp13_S_contig16202.4512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16202 2200..3930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16202.4512.1

>prot_Ecto-sp13_S_contig16202.4512.1 ID=prot_Ecto-sp13_S_contig16202.4512.1|Name=mRNA_Ecto-sp13_S_contig16202.4512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
VGVRHHHGQRRVQARIYGRQLAGQVVGTSDVRPRHGRPSAVPPLRYRDSS
AADRGLRGPPSPPHSGEEGGGRASGGHSGQPPPQLLYVPGVPQAARVHVQ
SGARGQAQARHHRRTGPLRPR
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mRNA from alignment at Ecto-sp13_S_contig16202:2199..3930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16202.4512.1 ID=mRNA_Ecto-sp13_S_contig16202.4512.1|Name=mRNA_Ecto-sp13_S_contig16202.4512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16202:2199..3930- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGAGTACGGCACCATCATGGCCAGCGTCGTGTGCAGGCACGGATATA
CGGTCGACAGCTCGCAGGTGTGGAGGCGTTGCGTTGTTTTCGATTAAGAG
TTTCGGTTTCAAAAGAGGCGCGTCCAGATCAAATCTACTGCAGTAGGCGC
CCCAATGCCAAAACCTTTATACGTTGGGGTGCGTTGTGTGTAACCCTGGA
AAACGAAGGTCGTCGTTTTGTTTCTAGCATTGACCGCGCTCGCGAAACGG
CTGACCAATGCAAAGACGTCAGTCTCAGTGCGGTAATGCTTCTCCAGGCC
GTTAACTGAGGAGCTTGTGTGTTCGTCCCACATCCATTCTAGCGCCAGCC
AGCCTACGCGCCTCTCGCTGTACAGGAAGCAGATGTCATGGCTAGCAGTT
TTTTGTGCCCCCGCGACAGTTTACGTTCTTTTTCTTTTTAACAAAGTGTT
GGTTTTGCAAACCATCTGTGTTTGAGGTTGTTATTTACTATCTCAATCTC
AAGATCCTCCTCCCGACCGCACGTTCACGCCCGGAAGGTAGAGAAGTTGC
ACGTCGAACCGCTCCCCGTACCCCCTCAATCGCTAACCCACCCGCTTTAT
CATCTACCTGTCTACTCCCATTTGTGTAAGAGGTGGTTGGCGCGAGTGAT
GTCCAACCTCGACACCGACCCCCCCCCCCCCCCCCCTCCAATCTCACGCC
CACCCGCTCTCGTTTTGAACTCCCATGGGAAGGTCAAGTGGTTGGCACGA
GTGATGTCCGACCTCGACACGGAAGGCCGTCGGCAGTTCCTCCGCTTCGT
TACCGGGACTCCTCGGCTGCCGATAGGGGGCTTCGGGGCCCTCCGTCCCC
GCCTCACAGTGGTGAAGAAGGAGGTGGACGTGCTTCCGGGGGGCACTCCG
GACAGCCACCTCCCCAGCTGCTCTACGTGCCAGGTATGCATGCAGTCGTT
GTTGTTCTTGTTGTATTCACGTTAAGAACCGTTCCGATCACTCCTCCCGG
TACCTTCGTCTGTCCGTACTATTTTCACACTTGATGCAGTCGATTCCCGT
GGTCACACGGTAACTTACTCAACAGTGGAGGAACATCAAAATACAATGGA
AAGCAGGCCGGCCTCTTGGTAGACTTTTTTGTCTTGCAGGATTTGGCAGC
GGTTGGTCCGTTTCCGTCAGGACCCCGTGTCCCCAGTAAACGGACCGGTT
GTTTGCTTGAGGTGTTCACAAGAATGGTTGGGTGCCGAAACGAGAGCCCC
AGATTTCATTTTGCCAGGATTACACAGCGGTTGGTCCGTGTCCATGAGCA
CCCCGTCCCCCGAGTAAACGGGCCTGTGGTCGGCTTGGATGACGAATACC
GGCATGCTTTGAAGATTGGTATGCATATTAGCCTACGTATTCCCTTTTGT
GCTTTTTTTTGTTACCAAGGCAGCTCTTCTTTCCACAGAAAAAAGTTGTG
TAGCGATGCATTTCGACAGCTGTTGCTTGCAGCCAATGTCGTGGTACGAA
ACCGTCCGTGTGTCAAGTCCTCTTCGGCATGAAGGTACAAAAAAAACCAG
GTTGTGTCTCTAATGAGTGCCAACAAACAAACGCACCTGCCATTTGATGT
GTGTGTATCGAATTTGCGCGTGGGCACAAACAACAGGTGTACCTCAAGCT
GCCCGCGTACACGTCCAGAGCGGCGCTAGAGGCCAAGCTCAAGCACGCCA
TCACCGAAGGACAGGACCACTTCGCCCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16202:2199..3930-

>mRNA_Ecto-sp13_S_contig16202.4512.1 ID=mRNA_Ecto-sp13_S_contig16202.4512.1|Name=mRNA_Ecto-sp13_S_contig16202.4512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16202:2199..3930- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGAGTACGGCACCATCATGGCCAGCGTCGTGTGCAGGCACGGATATA
CGGTCGACAGCTCGCAGGTCAAGTGGTTGGCACGAGTGATGTCCGACCTC
GACACGGAAGGCCGTCGGCAGTTCCTCCGCTTCGTTACCGGGACTCCTCG
GCTGCCGATAGGGGGCTTCGGGGCCCTCCGTCCCCGCCTCACAGTGGTGA
AGAAGGAGGTGGACGTGCTTCCGGGGGGCACTCCGGACAGCCACCTCCCC
AGCTGCTCTACGTGCCAGGTGTACCTCAAGCTGCCCGCGTACACGTCCAG
AGCGGCGCTAGAGGCCAAGCTCAAGCACGCCATCACCGAAGGACAGGACC
ACTTCGCCCTCGA
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