mRNA_Ecto-sp13_S_contig16201.4511.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16201.4511.1
Unique NamemRNA_Ecto-sp13_S_contig16201.4511.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.690e-57
Identity = 93/160 (58.13%), Postives = 109/160 (68.12%), Query Frame = 1
Query:    1 MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWD---------------------STPMAE-------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +SYAI+ +TAR W HKLGC+YRDM+SG+YFDGHDREDVL+YRVETYLPAY EHRDYTEIWIDASMEE R+W+                     +  ++E                   R IFCYQDEC+Y+A+DGE  AWWPP MHGL+KKGEGQGIMIS
Sbjct:  149 VSYAITESTARSWLHKLGCSYRDMQSGLYFDGHDREDVLKYRVETYLPAYFEHRDYTEIWIDASMEEVRSWEVETQPRDMKEDGRVWVCVHAFAETLSEFHPDLRARVTSKKKYADGRRAIFCYQDECIYRAHDGESKAWWPPMMHGLKKKGEGQGIMIS 308          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5KPN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.190e-50
Identity = 82/160 (51.25%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    1 MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWDSTPMAE----------------------------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +SY+++V TAR W HKLGC YRD KSG+YF+GHDREDVL YRVE YLPAY EHRDY EIWI+A+ +EAR+W+     +                                        R IFCYQDEC+Y+ANDG+R AW PP  H L+KKG+GQGIMIS
Sbjct:   48 VSYSVTVCTARSWLHKLGCEYRDRKSGLYFNGHDREDVLAYRVEKYLPAYFEHRDYMEIWIEATSDEARSWEVQVQEQDRQEVGRVWVCVHAFKETLSELPQHLCERVTSKKTYSNGRRAIFCYQDECIYRANDGQRSAWVPPNYHALKKKGDGQGIMIS 207          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.780e-50
Identity = 80/120 (66.67%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    1 MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWDSTPMAERQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +SY+++V TAR W HKLGC YRD KSG+YFDGHDREDV  YRVE YLPAY EHRDY EIWI+A+ +EAR         R IFCYQDEC+Y+ANDG+R  W PP  H L+KKG+GQGIMIS
Sbjct:  205 VSYSVTVRTARSWLHKLGCEYRDPKSGLYFDGHDREDVPAYRVEKYLPAYFEHRDYMEIWIEATSDEAR-------GRRAIFCYQDECIYRANDGQRFEWVPPNYHALKKKGDGQGIMIS 317          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.830e-46
Identity = 81/160 (50.62%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWDSTPMAE----------------------------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +SY+++  TAR W  KLGC YRD +SG+YFDGHDREDVL+YRVE YLPAY EHRDY EIWIDA+ +EAR+W+     +                                        R IFCYQDEC+Y+ANDG+R AW PP  H L+KKG+GQGIMIS
Sbjct:  416 VSYSVTDRTARSWLRKLGCEYRDRRSGLYFDGHDREDVLEYRVEKYLPAYFEHRDYMEIWIDATSDEARSWEVQVQEQDRQEDGRVWVCVHAFKETLSELPQHLRERVTSKKTYSDGRRAIFCYQDECIYRANDGQRYAWVPPNFHALKKKGDGQGIMIS 575          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5JFH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.480e-46
Identity = 79/160 (49.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWDSTPMAE----------------------------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +SY+++V TAR W +KLG  Y D KSG+YF+GHDREDVL YRVE YLPAY EHRDY EIWI+A+ +EAR+W+     +                                        R IFCYQDEC+Y+ANDG+R AW PP  H L+KKG+GQGIMIS
Sbjct:   54 VSYSVTVRTARSWLYKLGREYCDRKSGLYFNGHDREDVLAYRVEKYLPAYFEHRDYMEIWIEATSDEARSWEVQVQEQDRQEDGRVWVCVHAFKETLSELPQHLRERVTSKKTYSDGRRAIFCYQDECIYRANDGQRFAWVPPNYHALKKKGDGQGIMIS 213          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.070e-43
Identity = 77/157 (49.04%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   10 AISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWDSTPMAE----------------------------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +++V TAR   HKLGC YRD KSG+YF+GHDREDVL YRVE YLPAY EHRDY EIWI+A+ +EA +W+    A+                                        R IFCYQDEC+Y+AND +R AW PP  H L+KKG+GQGIM S
Sbjct:   82 SVTVRTARSRLHKLGCEYRDRKSGLYFNGHDREDVLAYRVEKYLPAYFEHRDYMEIWIEATSDEAWSWEVQVQAQDRQNDGRVWVCVHAFRETLSELPQHLRERVTSKKTYSDGRRAIFCYQDECIYRANDDQRFAWVPPNYHALKKKGDGQGIMTS 238          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.860e-33
Identity = 66/124 (53.23%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  109 DVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWD---------------------STPMAE-------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            DVL+YRVETYLPAY EHRDYTEIWIDASMEE R+W+                     +  ++E                   R IFCYQDEC+Y+A+DGE  AWWPP MHGL+KKGEGQGIMIS
Sbjct:  201 DVLKYRVETYLPAYFEHRDYTEIWIDASMEEVRSWEVETQPRDMKEDGRVWVCVHAFAETLSEFHPDLRARVTSKKKYADGRRAIFCYQDECIYRAHDGESKAWWPPMMHGLKKKGEGQGIMIS 324          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5JC29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC29_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 9.390e-33
Identity = 64/145 (44.14%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   46 KLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWD----------------------------------------STPMAERQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            + G    D  SG+YFDGHDR DVL+YRVE YLP Y EH DYTE+WIDA+ EEA+ W                                         + P  +R IFC+QDEC+Y+ ND +R +W PP  +GL+KKGEG GIMIS
Sbjct:   79 QAGVQIPDPWSGLYFDGHDRADVLKYRVEEYLPVYFEHLDYTEVWIDATWEEAQAWGVRTHEQNRGEEGRVWVCVHAFEETLCNLLEHLRKRVTSKKAYPEGKRAIFCFQDECMYRGNDDQRCSWVPPNFNGLKKKGEGAGIMIS 223          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5KK29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK29_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.860e-31
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1
Query:    1 MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDRED-VLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWD 216
            +SYAI+  TAR W HKLGC YRD KSG+YFDGHDRED VL++RVETYLPAY EHRDYTEIWIDAS+E+AR+W+
Sbjct:   32 VSYAIAERTARSWLHKLGCEYRDTKSGLYFDGHDREDDVLEFRVETYLPAYFEHRDYTEIWIDASLEKARSWE 104          
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.490e-31
Identity = 61/136 (44.85%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   73 KSGMYFDGHDREDVLQYRVETYLPAYSEHRDYTEIWIDASMEEARTWDSTPMAE----------------------------------------RQIFCYQDECVYKANDGERMAWWPPTMHGLRKKGEGQGIMIS 360
            +SG+YFDG DREDVL YRVE YLPAY EHRDY EIWI+A+ +EAR+W+     +                                        R I CY DEC+Y+ANDG+R AW PP  H  ++KG+ QGIMIS
Sbjct:  304 QSGLYFDGRDREDVLAYRVEKYLPAYFEHRDYMEIWIEATSDEARSWEVQVQEQDRQEDGRVWVWVHAFKETLSELPQHLRERVTSKKTYSDGRRAILCYHDECIYRANDGQRFAWVPPNYHAFKRKGDSQGIMIS 439          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16201.4511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFI8_9PHAE3.690e-5758.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN2_9PHAE1.190e-5051.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP5_9PHAE4.780e-5066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE2.830e-4650.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFH8_9PHAE4.480e-4649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXQ2_9PHAE6.070e-4349.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX5_9PHAE2.860e-3353.23Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC29_9PHAE9.390e-3344.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KK29_9PHAE2.860e-3176.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE6.490e-3144.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16201contigEcto-sp13_S_contig16201:254..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start1
Seed ortholog score73.6
Seed ortholog evalue7.3e-11
Seed eggNOG ortholog40483.S8DHS9
Model size360
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs226TY@155619,2D1RE@1,2SIZV@2759,3AFJR@33154,3H14A@355688,3PCBT@4751,3V3W0@5204
Cds size360
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.5554001-CDS-Ecto-sp13_S_contig16201:253..4691681462854.5554001-CDS-Ecto-sp13_S_contig16201:253..469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16201 254..469 +
1681462854.5653625-CDS-Ecto-sp13_S_contig16201:590..7341681462854.5653625-CDS-Ecto-sp13_S_contig16201:590..734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16201 591..734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16201.4511.1prot_Ecto-sp13_S_contig16201.4511.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16201 254..734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16201.4511.1

>prot_Ecto-sp13_S_contig16201.4511.1 ID=prot_Ecto-sp13_S_contig16201.4511.1|Name=mRNA_Ecto-sp13_S_contig16201.4511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MSYAISVTTARFWFHKLGCAYRDMKSGMYFDGHDREDVLQYRVETYLPAY
SEHRDYTEIWIDASMEEARTWDSTPMAERQIFCYQDECVYKANDGERMAW
WPPTMHGLRKKGEGQGIMIS
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mRNA from alignment at Ecto-sp13_S_contig16201:254..734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16201.4511.1 ID=mRNA_Ecto-sp13_S_contig16201.4511.1|Name=mRNA_Ecto-sp13_S_contig16201.4511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16201:254..734+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTACGCGATCAGCGTGACCACAGCGCGGTTCTGGTTTCACAAGCT GGGATGCGCCTACCGCGACATGAAGTCGGGCATGTACTTCGACGGCCATG ACCGTGAGGACGTCCTGCAGTACCGGGTCGAGACGTATCTCCCTGCGTAC TCCGAGCACCGCGACTACACGGAGATCTGGATCGACGCGAGCATGGAGGA GGCGCGAACCTGGGACGTGGAGACGCAGCCGAGGGACAGGACGGAGGACG GGCGTGTTTGGGTCTGCGTGCATGCCTTCGCGGAAACTCTCTCCGAGCTC CACCCGAATCTACGAGCGAGGGTCACGAGCAAGAAAGAGTACGCCGATGG CAGAAAGGCAAATATTTTGCTACCAGGACGAGTGCGTCTACAAGGCCAAC GACGGGGAGCGTATGGCGTGGTGGCCGCCGACGATGCACGGGCTGAGAAA GAAGGGAGAAGGACAGGGCATCATGATTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16201:254..734+

>mRNA_Ecto-sp13_S_contig16201.4511.1 ID=mRNA_Ecto-sp13_S_contig16201.4511.1|Name=mRNA_Ecto-sp13_S_contig16201.4511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16201:254..734+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTACGCGATCAGCGTGACCACAGCGCGGTTCTGGTTTCACAAGCT
GGGATGCGCCTACCGCGACATGAAGTCGGGCATGTACTTCGACGGCCATG
ACCGTGAGGACGTCCTGCAGTACCGGGTCGAGACGTATCTCCCTGCGTAC
TCCGAGCACCGCGACTACACGGAGATCTGGATCGACGCGAGCATGGAGGA
GGCGCGAACCTGGGACAGTACGCCGATGGCAGAAAGGCAAATATTTTGCT
ACCAGGACGAGTGCGTCTACAAGGCCAACGACGGGGAGCGTATGGCGTGG
TGGCCGCCGACGATGCACGGGCTGAGAAAGAAGGGAGAAGGACAGGGCAT
CATGATTTCC
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