mRNA_Ecto-sp13_S_contig16201.4510.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16201.4510.1
Unique NamemRNA_Ecto-sp13_S_contig16201.4510.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5KQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ48_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-23
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:  124 DIVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            DIVQKFCRKVANFHAVYDAGL GAEAVDAQEKCKS RKPAPSEYINPK
Sbjct:   97 DIVQKFCRKVANFHAVYDAGLTGAEAVDAQEKCKSHRKPAPSEYINPK 144
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.120e-21
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:  124 DIVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            DIVQKFCRKVANFHAVYDAGL GAEAV+AQEKCKS RKPAPSEYINPK
Sbjct:  621 DIVQKFCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINPK 668
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5KMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.100e-20
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:  124 DIVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            DIVQKFCRKVANFHA YDAGL GA+AVDA EKCKS RKPAPSEYINPK
Sbjct:  300 DIVQKFCRKVANFHAAYDAGLTGAKAVDAHEKCKSDRKPAPSEYINPK 347
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5KM80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM80_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.340e-19
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:  121 NDIVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            +DIVQKFCRKVANFH VYDAGL GAEAVDAQEK KS R+ APSE++NPK
Sbjct:   80 HDIVQKFCRKVANFHTVYDAGLTGAEAVDAQEKYKSHRRSAPSEFVNPK 128
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.570e-19
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  112 KNDNDIVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            KN      KFCRKVANFHAVYDAGL GAEAV+AQEKCKS RKPAPSEYINPK
Sbjct:  381 KNKEGYWTKFCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINPK 432
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.660e-12
Identity = 51/150 (34.00%), Postives = 64/150 (42.67%), Query Frame = 1 
Query:    1 MTAETFRDYINKDVLPEIAATETDGYNPVKHAPVTKIKNDNDIVQKFC----------------------RK---------------------------------------VANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            M +E F +Y+NKDVLP++A T+T  Y+P KHAPVTK   +    +K                        RK                                       VANF+ VY  GL+GAEAV  ++   S RKPAPSEYINPK
Sbjct:  303 MPSEGFHEYLNKDVLPQVADTKTCDYDPFKHAPVTKTTTETASGEKVVSYSVTVRTARSWLHKLGCEYRDRKSGXVLGDRSHGALLAAQAGVRVPRSQVGPIQVLGPAALTVANFNEVYRDGLQGAEAVQKRDTFNSHRKPAPSEYINPK 452
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.350e-12
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  127 IVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            IVQKFCR VANF+ VY  GLKGAEAV  ++  KS RKPAPSEYINPK
Sbjct:  518 IVQKFCRTVANFNEVYRDGLKGAEAVQKRDTFKSHRKPAPSEYINPK 564
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.400e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  127 IVQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            IVQKFCR VANF+ VY  GL+GAEAV  ++  KS RKPAPSEYINPK
Sbjct:  557 IVQKFCRTVANFNEVYSDGLQGAEAVQKRDTFKSHRKPAPSEYINPK 603
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.020e-8
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  130 VQKFCRKVANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK 267
            V++ C+ VANF+ VY  GL+G EAV  ++  KS RKPAPSEYINPK
Sbjct:  649 VRQHCKTVANFNGVYRDGLQGTEAVQKRDTFKSHRKPAPSEYINPK 694
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BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.740e-7
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 MTAETFRDYINKDVLPEIAATETDGYNPVKHAPVTK 108
            MTAE FR+Y+NKDVLP++A T+T  Y+P KHAPVTK
Sbjct:  384 MTAEGFREYLNKDVLPQVADTKTCDYDPFKHAPVTK 419
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16201.4510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KQ48_9PHAE1.030e-2395.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX5_9PHAE7.120e-2193.75Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMH6_9PHAE8.100e-2089.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM80_9PHAE2.340e-1981.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE5.570e-1982.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE1.660e-1234.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE2.350e-1274.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP5_9PHAE4.400e-1272.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE2.020e-860.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH8_9PHAE1.740e-769.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16201contigEcto-sp13_S_contig16201:122..1721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_003980.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.5188048-CDS-Ecto-sp13_S_contig16201:121..2451681462854.5188048-CDS-Ecto-sp13_S_contig16201:121..245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16201 122..245 +
1681462854.5294285-CDS-Ecto-sp13_S_contig16201:1578..17211681462854.5294285-CDS-Ecto-sp13_S_contig16201:1578..1721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16201 1579..1721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16201.4510.1prot_Ecto-sp13_S_contig16201.4510.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16201 122..1721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16201.4510.1

>prot_Ecto-sp13_S_contig16201.4510.1 ID=prot_Ecto-sp13_S_contig16201.4510.1|Name=mRNA_Ecto-sp13_S_contig16201.4510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MTAETFRDYINKDVLPEIAATETDGYNPVKHAPVTKIKNDNDIVQKFCRK
VANFHAVYDAGLKGAEAVDAQEKCKSRRKPAPSEYINPK
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mRNA from alignment at Ecto-sp13_S_contig16201:122..1721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16201.4510.1 ID=mRNA_Ecto-sp13_S_contig16201.4510.1|Name=mRNA_Ecto-sp13_S_contig16201.4510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16201:122..1721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGAGACGTTCCGCGACTACATCAACAAGGATGTTCTGCCAGA
GATTGCTGCAACCGAGACCGACGGGTACAACCCCGTCAAGCACGCGCCCG
TGACCAAGATCAAGAACGACAACGGTGAAGTCATGTCGTACGCGATCAGC
GTGACCACAGCGCGGTTCTGGTTTCACAAGCTGGGATGCGCCTACCGCGA
CATGAAGTCGGGCATGTACTTCGACGGCCATGACCGTGAGGACGTCCTGC
AGTACCGGGTCGAGACGTATCTCCCTGCGTACTCCGAGCACCGCGACTAC
ACGGAGATCTGGATCGACGCGAGCATGGAGGAGGCGCGAACCTGGGACGT
GGAGACGCAGCCGAGGGACAGGACGGAGGACGGGCGTGTTTGGGTCTGCG
TGCATGCCTTCGCGGAAACTCTCTCCGAGCTCCACCCGAATCTACGAGCG
AGGGTCACGAGCAAGAAAGAGTACGCCGATGGCAGAAAGGCAAATATTTT
GCTACCAGGACGAGTGCGTCTACAAGGCCAACGACGGGGAGCGTATGGCG
TGGTGGCCGCCGACGATGCACGGGCTGAGAAAGAAGGGAGAAGGACAGGG
CATCATGATTTCCGGCACCATCGTGGGCGACGTTGGATTCGTCGAGGGCA
CTCAAGAGGACATGGACAAGGCTCAAGATCTGCGGCGTGAGCGCTGCCGC
ATTTCGAAGGAAAAACACGCTGCAGGTGATCAGACCAGGCCTGAAAAGTA
CCGCGACATCAACATACTCTACTTCGAGTACGGCAAGAACAAGGAGGGCT
ACTGGACGGGGGAGAAGCTGATCGAGCACATGGCGGATGTGTTGGATCTG
TTGGCCGTCAAGTTCCCGAACCACAGGCCCATCTGTTTTTTCGATTGGTC
ATCGTGCCATGATTGCGTTGAGGAAGGGGCACCGAGTGTATCTAGAATGA
ACGCGGGGTACGGGGGGGTGAGAAAAGGGCAGGATCTAGCTCCTCAGAAT
GCTACCACCATACTGAAAGACACACCCACACTCAAGAAAGGGGCAGTTCA
GCACCTCACCTTCCAGCAGGGAGAGTACCCATTCTATGAGCCAAACGCCA
CCGATCACGTAGGCAAGGTCAAGGGGATGAAGCAAATCCTGTTTGAGAGG
GGGCTTTGGATCCCAGGGATGACCGTGTTGGGGGGCAAGAAGGGTCAGGA
GCCTAACCCGGAGATGAGCATGCCGGCGGTGTTGCGCGCGCAAAAGGATT
TCGCGAACGTCGACTCTAGTCTAGAGGTTCTCTTGAAGCGCCACGGAGGG
GTTGCGCTCATGCTTCCAAAGTTCCATTGCGAGTTGAACCCGATCGAGCT
TGTGTGGGGTAGATCCAAGTGGTGGATCCGCAGGAACTGCAAATACACTA
TCGCCTGCTTGCGAGAGAAAGTTTCCAAGAGCTTCAGGGTAGACTACTTG
AGCCTAGACATCGTTCAAAAGTTCTGCCGGAAGGTGGCCAATTTCCACGC
GGTGTACGACGCAGGGCTTAAGGGCGCCGAGGCGGTAGATGCGCAAGAGA
AATGCAAGTCGCGCCGTAAGCCGGCTCCATCCGAATACATTAATCCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16201:122..1721+

>mRNA_Ecto-sp13_S_contig16201.4510.1 ID=mRNA_Ecto-sp13_S_contig16201.4510.1|Name=mRNA_Ecto-sp13_S_contig16201.4510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16201:122..1721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGAGACGTTCCGCGACTACATCAACAAGGATGTTCTGCCAGA
GATTGCTGCAACCGAGACCGACGGGTACAACCCCGTCAAGCACGCGCCCG
TGACCAAGATCAAGAACGACAACGACATCGTTCAAAAGTTCTGCCGGAAG
GTGGCCAATTTCCACGCGGTGTACGACGCAGGGCTTAAGGGCGCCGAGGC
GGTAGATGCGCAAGAGAAATGCAAGTCGCGCCGTAAGCCGGCTCCATCCG
AATACATTAATCCCAAG
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