mRNA_Ecto-sp13_S_contig162.4509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig162.4509.1
Unique NamemRNA_Ecto-sp13_S_contig162.4509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig162.4509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig162contigEcto-sp13_S_contig162:33811..34278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categorymitochondrion
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.4338818-UTR-Ecto-sp13_S_contig162:33810..338411681462854.4338818-UTR-Ecto-sp13_S_contig162:33810..33841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig162 33811..33841 +
1681462854.4509785-UTR-Ecto-sp13_S_contig162:34156..342781681462854.4509785-UTR-Ecto-sp13_S_contig162:34156..34278Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig162 34157..34278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.442848-CDS-Ecto-sp13_S_contig162:33841..341561681462854.442848-CDS-Ecto-sp13_S_contig162:33841..34156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig162 33842..34156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig162.4509.1prot_Ecto-sp13_S_contig162.4509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig162 33842..34156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig162.4509.1

>prot_Ecto-sp13_S_contig162.4509.1 ID=prot_Ecto-sp13_S_contig162.4509.1|Name=mRNA_Ecto-sp13_S_contig162.4509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MRRCTALKRFVLGKKHKQPCYRYVGVMQAKLPTEKRHNQPCSPKVIILIK
SSNCQRNLGAASPGDNALLLYDRKHTQTCMGRFAEGHTRQWLCHVETGRP
DRLA*
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mRNA from alignment at Ecto-sp13_S_contig162:33811..34278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig162.4509.1 ID=mRNA_Ecto-sp13_S_contig162.4509.1|Name=mRNA_Ecto-sp13_S_contig162.4509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig162:33811..34278+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAGTTGATGGAAAATGTCGATGAAATTCCATGCGAAGATGCACTGCAC
TAAAACGTTTTGTTTTGGGAAAGAAGCACAAACAGCCATGTTACCGGTAT
GTTGGGGTCATGCAAGCGAAACTACCTACTGAAAAGCGGCACAACCAACC
GTGTAGCCCCAAAGTGATAATATTGATCAAATCATCGAATTGTCAGCGCA
ATTTGGGGGCAGCTTCACCGGGTGATAACGCACTGTTGCTTTACGACCGA
AAACACACGCAAACATGCATGGGCCGGTTTGCTGAGGGTCACACGAGACA
GTGGCTGTGCCATGTCGAGACGGGCCGACCCGATCGACTGGCATGAAAAC
GGACGTAATCCATGACTTCATTGAATCTTTCACCCAAACTCTGTGCAAAC
AATGCATTGGGCAGTAGGTAACCTTCAGGGTACACCTCGGTACTAGTTTC
TTAGGCGGATTCACGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig162:33811..34278+

>mRNA_Ecto-sp13_S_contig162.4509.1 ID=mRNA_Ecto-sp13_S_contig162.4509.1|Name=mRNA_Ecto-sp13_S_contig162.4509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig162:33811..34278+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAAGATGCACTGCACTAAAACGTTTTGTTTTGGGAAAGAAGCACAA
ACAGCCATGTTACCGGTATGTTGGGGTCATGCAAGCGAAACTACCTACTG
AAAAGCGGCACAACCAACCGTGTAGCCCCAAAGTGATAATATTGATCAAA
TCATCGAATTGTCAGCGCAATTTGGGGGCAGCTTCACCGGGTGATAACGC
ACTGTTGCTTTACGACCGAAAACACACGCAAACATGCATGGGCCGGTTTG
CTGAGGGTCACACGAGACAGTGGCTGTGCCATGTCGAGACGGGCCGACCC
GATCGACTGGCATGA
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