mRNA_Ecto-sp13_S_contig16198.4507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16198.4507.1
Unique NamemRNA_Ecto-sp13_S_contig16198.4507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16198.4507.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 386 bits (992), Expect = 9.510e-132
Identity = 208/280 (74.29%), Postives = 216/280 (77.14%), Query Frame = 1 
Query:  217 SEQLEPTQEALERXXXXXXXXXXKAEDAVAARDAAEESGRKAREANEKLPKELETVKAGIARALRENEQYQSKARRVTLPRRCREKAQEPDQPKEMAALHFRSMHDEVPFVWLKKHSEVEERPSQIEGHGAFLKHGASKGTIVHTSVLPSSEFNDDFTMEQYDCCYHVMHGDKSGVVY---------------------------------------RAAPPDWYEPTQAGQA-VITSWYTCSLVTRRPVEAGEELTICYAKFPPAWDQGKQGRRSKRKR 936
            S+QL PTQEA ER          KAEDAVAARDAAEESGRKA EANEKL KELETVKAGIARAL EN QY SK RRVTLPRRCREKAQEPDQPKEMAALHFRSMHDEVPFVWLK+H EVEE+PSQIEGHGAFLK GASKGT VHTSVLPSSEF+DDFT+EQYDCCYHVMHGDK+GVVY                                        AAPPDWYEPT+AGQA VITSWYTCSLVTRR VEAGEELTICYAKFPPAWD+GKQ RRSKRKR
Sbjct:    9 SKQLAPTQEAFERERKRVEIEKRKAEDAVAARDAAEESGRKAFEANEKLQKELETVKAGIARALTENGQYISKPRRVTLPRRCREKAQEPDQPKEMAALHFRSMHDEVPFVWLKEHFEVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFPPAWDKGKQDRRSKRKR 288
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BLAST of mRNA_Ecto-sp13_S_contig16198.4507.1 vs. uniprot
Match: A0A6H5JRX6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.230e-13
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    4 MIVSALQPSVWPEKASTTAAAGGVVDVAKATFLAAARSAGTVGQSG 141
            MIVSALQPSVWPEKASTTAAAGGV+DVAKA FLAAA SAG VGQSG
Sbjct:  118 MIVSALQPSVWPEKASTTAAAGGVLDVAKAAFLAAAGSAGAVGQSG 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16198.4507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBG8_9PHAE9.510e-13274.29SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRX6_9PHAE1.230e-1391.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16198contigEcto-sp13_S_contig16198:2209..3648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1046
Hectar predicted targeting categoryother localisation
Exons4
Cds size936
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16198.4507.1prot_Ecto-sp13_S_contig16198.4507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16198 2316..3645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.3657956-UTR-Ecto-sp13_S_contig16198:2208..23151681462854.3657956-UTR-Ecto-sp13_S_contig16198:2208..2315Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16198 2209..2315 -
1681462854.4066577-UTR-Ecto-sp13_S_contig16198:3645..36481681462854.4066577-UTR-Ecto-sp13_S_contig16198:3645..3648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16198 3646..3648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.3744793-CDS-Ecto-sp13_S_contig16198:2315..25031681462854.3744793-CDS-Ecto-sp13_S_contig16198:2315..2503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16198 2316..2503 -
1681462854.3825247-CDS-Ecto-sp13_S_contig16198:2620..30231681462854.3825247-CDS-Ecto-sp13_S_contig16198:2620..3023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16198 2621..3023 -
1681462854.3905582-CDS-Ecto-sp13_S_contig16198:3133..32681681462854.3905582-CDS-Ecto-sp13_S_contig16198:3133..3268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16198 3134..3268 -
1681462854.398543-CDS-Ecto-sp13_S_contig16198:3435..36451681462854.398543-CDS-Ecto-sp13_S_contig16198:3435..3645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16198 3436..3645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16198.4507.1

>prot_Ecto-sp13_S_contig16198.4507.1 ID=prot_Ecto-sp13_S_contig16198.4507.1|Name=mRNA_Ecto-sp13_S_contig16198.4507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp
MIVSALQPSVWPEKASTTAAAGGVVDVAKATFLAAARSAGTVGQSGDDDG
VVVPDVDMSGDFSAVEQPGSDSEQLEPTQEALERERKRVEIERRKAEDAV
AARDAAEESGRKAREANEKLPKELETVKAGIARALRENEQYQSKARRVTL
PRRCREKAQEPDQPKEMAALHFRSMHDEVPFVWLKKHSEVEERPSQIEGH
GAFLKHGASKGTIVHTSVLPSSEFNDDFTMEQYDCCYHVMHGDKSGVVYR
AAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFPPAWDQ
GKQGRRSKRKR*
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mRNA from alignment at Ecto-sp13_S_contig16198:2209..3648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16198.4507.1 ID=mRNA_Ecto-sp13_S_contig16198.4507.1|Name=mRNA_Ecto-sp13_S_contig16198.4507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1440bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16198:2209..3648- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAATGATCGTATCAGCGTTGCAACCATCTGTGTGGCCTGAAAAGGCTTC
GACGACAGCAGCTGCTGGCGGTGTGGTGGACGTAGCAAAAGCTACTTTTC
TCGCAGCGGCACGCTCCGCTGGAACCGTGGGGCAGAGCGGCGATGACGAC
GGTGTTGTGGTCCCTGACGTCGACATGTCAGGCGATTTTTCTGCTGTGGA
GCAGCCTGGTTCGGTGAGTGAGCGGCTTGAGAAGAGGGAGAGAGAGAGAG
AGAGAGAGGCAATGCTCTGTATGTGTGTGTGTGATGTGTCCCAAATGCGC
TGCGCGAACTTTCCATGTAAACCCCGCGGCCCGCAATATAACAAGTTATG
CCCCCCCCCCTCCCCGCGCGACGTGGCCAGGATTCCGAACAGCTTGAGCC
AACCCAGGAGGCGTTGGAGCGAGAGAGAAAACGAGTCGAGATCGAAAGGA
GGAAAGCAGAGGACGCAGTCGCGGCAAGAGATGCTGCCGAGGAAAGTGGG
CGGAAGGCACGCGAGGTGGGTTGGCTGTGTCTCTACTGGTACGATTTCTC
TTCATTGTTCACCGACGTTGGCAGGCTACTAAAATAAGGACTTGTTCTCT
GTTGTAATTATATGTTGGTTGGCAGGCAAACGAGAAGCTACCAAAGGAGC
TGGAAACCGTGAAGGCTGGCATCGCACGTGCTTTGAGGGAGAATGAACAG
TACCAATCGAAGGCCCGGAGAGTGACGTTGCCACGCCGCTGCAGGGAGAA
AGCTCAAGAACCGGATCAACCGAAAGAAATGGCAGCCCTACACTTTCGGT
CCATGCATGATGAGGTGCCATTTGTGTGGCTGAAGAAGCATTCTGAAGTA
GAGGAGAGGCCAAGCCAGATTGAAGGCCACGGGGCGTTTCTCAAGCATGG
CGCGAGCAAAGGCACAATAGTGCATACGTCGGTGTTGCCTAGCTCCGAGT
TCAACGATGATTTTACGATGGAACAGTACGACTGCTGCTATCATGTGATG
CATGGTGACAAGAGCGGGGTGGTGTACATCGACCCGGGTGCCCTTTTCCG
AGGCAACCTGATGGGGTGCCTCGAGGACATGGGAAGTAAGGTGATCCGAC
TGTTAAACCACAGCAGCTCGCCTAATGCCGAGCTATGTTTCGGCGGAGCG
GCCCCTCCTGACTGGTATGAACCAACGCAAGCCGGGCAGGCAGTGATTAC
AAGCTGGTACACGTGCTCACTCGTGACCCGTCGACCAGTCGAAGCAGGGG
AAGAACTTACGATTTGCTATGCCAAGTTTCCGCCCGCGTGGGACCAGGGT
AAGCAGGGTAGGAGAAGTAAGAGGAAGCGGTAGACTACGGCGTTAGCAAA
GAGCGTGAAACGTGGGATGTAACGTAGCGCTTGATAGGGGGATTGGTACA
CTAGGTACCAGCGCTGCCGATCTTGAATGTAGAAGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16198:2209..3648-

>mRNA_Ecto-sp13_S_contig16198.4507.1 ID=mRNA_Ecto-sp13_S_contig16198.4507.1|Name=mRNA_Ecto-sp13_S_contig16198.4507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16198:2209..3648- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTATCAGCGTTGCAACCATCTGTGTGGCCTGAAAAGGCTTCGAC
GACAGCAGCTGCTGGCGGTGTGGTGGACGTAGCAAAAGCTACTTTTCTCG
CAGCGGCACGCTCCGCTGGAACCGTGGGGCAGAGCGGCGATGACGACGGT
GTTGTGGTCCCTGACGTCGACATGTCAGGCGATTTTTCTGCTGTGGAGCA
GCCTGGTTCGGATTCCGAACAGCTTGAGCCAACCCAGGAGGCGTTGGAGC
GAGAGAGAAAACGAGTCGAGATCGAAAGGAGGAAAGCAGAGGACGCAGTC
GCGGCAAGAGATGCTGCCGAGGAAAGTGGGCGGAAGGCACGCGAGGCAAA
CGAGAAGCTACCAAAGGAGCTGGAAACCGTGAAGGCTGGCATCGCACGTG
CTTTGAGGGAGAATGAACAGTACCAATCGAAGGCCCGGAGAGTGACGTTG
CCACGCCGCTGCAGGGAGAAAGCTCAAGAACCGGATCAACCGAAAGAAAT
GGCAGCCCTACACTTTCGGTCCATGCATGATGAGGTGCCATTTGTGTGGC
TGAAGAAGCATTCTGAAGTAGAGGAGAGGCCAAGCCAGATTGAAGGCCAC
GGGGCGTTTCTCAAGCATGGCGCGAGCAAAGGCACAATAGTGCATACGTC
GGTGTTGCCTAGCTCCGAGTTCAACGATGATTTTACGATGGAACAGTACG
ACTGCTGCTATCATGTGATGCATGGTGACAAGAGCGGGGTGGTGTACAGA
GCGGCCCCTCCTGACTGGTATGAACCAACGCAAGCCGGGCAGGCAGTGAT
TACAAGCTGGTACACGTGCTCACTCGTGACCCGTCGACCAGTCGAAGCAG
GGGAAGAACTTACGATTTGCTATGCCAAGTTTCCGCCCGCGTGGGACCAG
GGTAAGCAGGGTAGGAGAAGTAAGAGGAAGCGGTAG
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