mRNA_Ecto-sp13_S_contig16190.4505.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: D8LDQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ3_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.330e-44 Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 1
Query: 334 LAVLVAYWSLVPMCTTCGVGVSGTLSSSSSAVGGVEVASMEGSSVGYDVQPFSTLHINQLQVYGTHNSYHQRTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSD 759
LAV + +W+L P+CT+C V SG L SS V A+ D Q STL+INQLQV GTHNSYH+RT +P L +W Y +PS+ AQLDAG+RHLELD+HYDWKTGRWFV+H+S++DA+SSC+CL CL E+R WSD
Sbjct: 165 LAVAIFFWALSPVCTSC-VRSSGQLPSS------VVPAA--------DEQGTSTLYINQLQVIGTHNSYHRRTYVPALSDYWDYHYPSLTAQLDAGIRHLELDIHYDWKTGRWFVFHLSILDAVSSCNCLSVCLAEVREWSD 291
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: A0A6H5L092_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L092_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.280e-43 Identity = 83/142 (58.45%), Postives = 103/142 (72.54%), Query Frame = 1
Query: 334 LAVLVAYWSLVPMCTTCGVGVSGTLSSSSSAVGGVEVASMEGSSVGYDVQPFSTLHINQLQVYGTHNSYHQRTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSD 759
LAV + +W+L P+ T+C V SG LSSS V A+ D Q STL+INQLQV GTHNSYH+RT +P L +W Y++PS+ AQLDAG+RHLELD HYDWKTGRWFV+H+S++DA+SSC+CL CL EIR WSD
Sbjct: 164 LAVAIFFWALSPVRTSC-VRSSGQLSSS------VVPAA--------DEQGTSTLYINQLQVIGTHNSYHRRTFVPALSDYWDYQYPSLTAQLDAGIRHLELDTHYDWKTGRWFVFHLSILDAVSSCNCLSVCLAEIREWSD 290
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: A0A6H5KYL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL9_9PHAE) HSP 1 Score: 121 bits (304), Expect = 3.230e-31 Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1
Query: 505 NQLQVYGTHNSYHQRTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR 669
N L+VYGTHNSYH+RTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR
Sbjct: 83 NPLKVYGTHNSYHRRTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR 137
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: F0Y000_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y000_AURAN) HSP 1 Score: 82.4 bits (202), Expect = 2.830e-14 Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 505 NQLQVYGTHNSYHQRT---NIP---GLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWS 756
+ L +GTHNSYH+R + P L W+Y P + QLDAG RHLELDVH D T + VYH+ +D+ + C+CL CL + WS
Sbjct: 223 SDLVFWGTHNSYHRRPRRFHFPYWNALIPQWQYSHPRLARQLDAGARHLELDVHVDSATRKALVYHVQSLDSRTRCYCLRDCLGSLVDWS 312
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: A0A2E4FD70_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E4FD70_9DELT) HSP 1 Score: 81.6 bits (200), Expect = 4.130e-14 Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 493 TLHINQLQVYGTHNSYHQRTNIPGLGKFWKYEFPSIPAQLDA-GVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLN 765
+L +N +Q GTHNSYHQ+ P L KY PS+ QL+ GVR E D+H G+ ++HI ++D +SSC L CL+E RAWSD N
Sbjct: 128 SLRLNHMQALGTHNSYHQQPQAP-LHPSHKYTMPSLTDQLELHGVRQFEWDLHLHLD-GQLEIFHIPLIDQVSSCTLFLDCLEETRAWSDAN 217
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: UPI001CFCA1A7 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCA1A7) HSP 1 Score: 79.7 bits (195), Expect = 2.520e-13 Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 505 NQLQVYGTHNSYHQRTNI-PGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAW 753
NQL THNSYH++ L + YE I QL VR LELDVH++ +TGR+ VYHI V+D SSC C LSCL I+ W
Sbjct: 281 NQLSRLMTHNSYHRKKMFFSSLISQFNYEHDEIETQLQNHVRGLELDVHFNKRTGRFQVYHIPVLDDHSSCDCFLSCLLLIKRW 364
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: A0A7C4V381_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4V381_9BACT) HSP 1 Score: 75.9 bits (185), Expect = 2.630e-12 Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 484 PFSTLHINQLQVYGTHNSYHQRT-------NIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR-WFVYHISVVDALSSCHCLLSCLQEIRAWS 756
P + +NQ+QV GTHNSYH+R I K W YE + AQLD GVR ELD+H +T W V H+ D+ S+CH C+ I+ WS
Sbjct: 22 PAESPKMNQIQVIGTHNSYHKRPVHLEIAMKINEKAKDWDYEHLPLDAQLDRGVRSFELDIH---RTSEGWKVMHVPHFDSESTCHTFQECIDIIKQWS 117
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: A0A1Z9T786_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TMED261 TaxID=1986846 RepID=A0A1Z9T786_9PROT) HSP 1 Score: 74.7 bits (182), Expect = 5.420e-12 Identity = 42/98 (42.86%), Postives = 52/98 (53.06%), Query Frame = 1
Query: 502 INQLQVYGTHNSYHQRTNI----------PGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLN 765
INQLQ G+HNSY +I P + Y IP QLD G+R LELDV +D KT V H+ +D SSC L+SC +I AWS +N
Sbjct: 23 INQLQFVGSHNSYKLAMDIDMVTVLTERSPEAVESLDYSHLPIPDQLDMGLRKLELDVFFDAKTNMLSVGHVQQIDMNSSCSPLISCFNQILAWSKIN 120
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: D8LDQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ8_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 5.950e-12 Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1
Query: 667 RWFVYHISVVDALSSCHCLLSCLQEIRAWSDLN 765
RWFVYHISVVDALSSCHCLLSCL+EIRAWSDLN
Sbjct: 9 RWFVYHISVVDALSSCHCLLSCLEEIRAWSDLN 41
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Match: A0A4U1JD73_9DELT (Uncharacterized protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JD73_9DELT) HSP 1 Score: 74.3 bits (181), Expect = 9.770e-12 Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 472 YDVQPFSTLHINQLQVYGTHNSYHQRTNIPGLGKFWKYEFPSIPAQLDA-GVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSD 759
+D L ++ LQ THNSYH T +G+ W+Y + QL A GVRH+ELD+ Y++ + VYH+ V+D ++C L CL+ ++ WSD
Sbjct: 38 FDYPLDDVLRLHHLQTKSTHNSYHIETEGNTVGE-WRYTHAPLDVQLGAQGVRHVELDLRYNFDLEAFEVYHLPVLDEQTTCRKLTDCLRVLKDWSD 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16190.4505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16190.4505.1 >prot_Ecto-sp13_S_contig16190.4505.1 ID=prot_Ecto-sp13_S_contig16190.4505.1|Name=mRNA_Ecto-sp13_S_contig16190.4505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp MAPQLPISRDWGGDNETIPLPVVISPEQPRSAELEAGTEGFSPDRLLRQAback to top mRNA from alignment at Ecto-sp13_S_contig16190:3..3045- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16190.4505.1 ID=mRNA_Ecto-sp13_S_contig16190.4505.1|Name=mRNA_Ecto-sp13_S_contig16190.4505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3043bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16190:3..3045- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16190:3..3045- >mRNA_Ecto-sp13_S_contig16190.4505.1 ID=mRNA_Ecto-sp13_S_contig16190.4505.1|Name=mRNA_Ecto-sp13_S_contig16190.4505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16190:3..3045- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |