mRNA_Ecto-sp13_S_contig1617.4496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1617.4496.1
Unique NamemRNA_Ecto-sp13_S_contig1617.4496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1617.4496.1 vs. uniprot
Match: A0A6H5JMZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMZ4_9PHAE)

HSP 1 Score: 542 bits (1396), Expect = 5.660e-192
Identity = 326/352 (92.61%), Postives = 337/352 (95.74%), Query Frame = 3 
Query:    3 TGPMRLLVLLAAVAAGIVLQPSGVAAADEGVQQQAFRCESEEDLDGSACRVDMLPDSALAEMVYERGFDPDGADRLQLLDAVMQLLDYEYATGEDLREMEYIPDDGSAAAAAETAXXDLXXXXXXXXXXXXXXXXXXXXXXXXXGTGGEAGLEEEYASAGREDGDVDSPAGVESGGVGNDEEEASDDAIAREVIEECSSSSVASSFPVGGRGKEVAAYDESTLLGYAHGLATEVLRTIRRDLNSLVGMLPEPVERPVREAAAFVANTATRFVGPAVQKAERYTRGLRRGAGKTAGKAVVALKDEVVPRVWTGVRRAASNAKRRLEDAIAARKERSEQRREQHEQEEGRVQRD 1058
            TGPM LLVLLAAVAAGIVLQPSGVAAADEGVQQ+AFRCESEEDLDGSACRVDMLPDSALAEMVYERGFDPDGADRLQLLDAVMQLLDYEYATGEDLREMEYIPDDGSAAAAAETA  DL XXXXXXXXXXXXXXXXXXXXXXXXGT GE GLEEE+ +AGREDGD DSPAGVESGGVGNDEEEASDDAIAREVIEEC+SSSV SS PVGGRG+EVAAY ESTLLGYAHGLATEVLRT+RRDLNSLVGMLPEP+ERPVREAAAFV NTATRFVGPAVQKAERYTRGLRRGAGKTAGKAV+ALKDEV+PRVWTGV RAASNAKRR+EDAIAARKERSEQRREQ EQE+GR QRD
Sbjct:   10 TGPMNLLVLLAAVAAGIVLQPSGVAAADEGVQQEAFRCESEEDLDGSACRVDMLPDSALAEMVYERGFDPDGADRLQLLDAVMQLLDYEYATGEDLREMEYIPDDGSAAAAAETAAADLEXXXXXXXXXXXXXXXXXXXXXXXXGTRGEEGLEEEHGAAGREDGDADSPAGVESGGVGNDEEEASDDAIAREVIEECTSSSVTSSCPVGGRGEEVAAYGESTLLGYAHGLATEVLRTMRRDLNSLVGMLPEPLERPVREAAAFVGNTATRFVGPAVQKAERYTRGLRRGAGKTAGKAVMALKDEVLPRVWTGVSRAASNAKRRVEDAIAARKERSEQRREQQEQEDGRAQRD 361
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1617.4496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMZ4_9PHAE5.660e-19292.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1617contigEcto-sp13_S_contig1617:9733..11597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1061
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005440.1
Cds size1050
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462853.4604225-UTR-Ecto-sp13_S_contig1617:9732..97431681462853.4604225-UTR-Ecto-sp13_S_contig1617:9732..9743Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1617 9733..9743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462853.4712102-CDS-Ecto-sp13_S_contig1617:9743..99311681462853.4712102-CDS-Ecto-sp13_S_contig1617:9743..9931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1617 9744..9931 +
1681462853.4808993-CDS-Ecto-sp13_S_contig1617:10735..115971681462853.4808993-CDS-Ecto-sp13_S_contig1617:10735..11597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1617 10736..11597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1617.4496.1prot_Ecto-sp13_S_contig1617.4496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1617 9744..11597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1617.4496.1

>prot_Ecto-sp13_S_contig1617.4496.1 ID=prot_Ecto-sp13_S_contig1617.4496.1|Name=mRNA_Ecto-sp13_S_contig1617.4496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
MRLLVLLAAVAAGIVLQPSGVAAADEGVQQQAFRCESEEDLDGSACRVDM
LPDSALAEMVYERGFDPDGADRLQLLDAVMQLLDYEYATGEDLREMEYIP
DDGSAAAAAETAAADLEAAAANAAAAALAAEAEAAALAAAAGTGGEAGLE
EEYASAGREDGDVDSPAGVESGGVGNDEEEASDDAIAREVIEECSSSSVA
SSFPVGGRGKEVAAYDESTLLGYAHGLATEVLRTIRRDLNSLVGMLPEPV
ERPVREAAAFVANTATRFVGPAVQKAERYTRGLRRGAGKTAGKAVVALKD
EVVPRVWTGVRRAASNAKRRLEDAIAARKERSEQRREQHEQEEGRVQRD*
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mRNA from alignment at Ecto-sp13_S_contig1617:9733..11597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1617.4496.1 ID=mRNA_Ecto-sp13_S_contig1617.4496.1|Name=mRNA_Ecto-sp13_S_contig1617.4496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1617:9733..11597+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACGGGACCAATGCGTCTCCTGGTGTTGCTTGCAGCTGTGGCAGCGGGC
ATTGTGTTGCAGCCTTCGGGCGTTGCCGCTGCGGACGAAGGCGTCCAGCA
GCAGGCATTTCGCTGTGAGAGCGAGGAAGATTTGGACGGCTCGGCTTGCA
GGGTCGACATGCTGCCGGACTCAGCGCTGGCGGAGATGGTTTACGAGAGG
TAGGCAAGAAACGAGGGACTCGATTGTGCGTTGAGCCATTCCTGTTTGTG
CGGTGAAGGCAACGAAAGACAATGGTGGGGAGGGTAGGTACATAATATGT
AGACATGTTTCGTTGCTCCGCTGCCACCCTGCCGGGTGCTTGCTGAAGCT
AAGCAGTAGATAGCGGTTGCCGCGTTGCCGCGATGCAGCCGTGCTTCCTG
GAAACAGGCCGTGGGGGAATTGTGTTCGGATAAGCTTGAATTGGGTTCGG
AAAGCTTGGTTTTGGGGGAGATGAACGGCGGTGGAACGTTGGTTACCCAG
CGCAGAAAGTGCTCGCCTTGTGTTGCACCTCATGTTGAACTCGACGGCTG
TCCTTCGCGTGCCACGTGCCAGCTCCTGCACATCTCCACGCCCGCAGTTG
CCGCCGCGCGTGGTGACGCTTCCTTCCTATCTATCTATTCACTGACACGA
TAAATGTGGGGTGCATGATGGCAACCTGCTAAGTAACGTACCTGTCACAT
TGTCAAAATCGCTCGTCCCGAAACATACTGATTGCAATAGACTATGTGGC
AGATCATGATCGGTCCGCGATCCCCCCCATACTCCCACTTCAATTAGTCC
CGCCAAAATCTACTGCTGTAACCACGCAATATAACGGTTTGTATCATGAA
CAGCAGCATTGGCTGGAAAAGACTCAACTTTTCCACTACCTCATGCAAGG
AGAAAATTGACAAACGCCAGCAATATTTTTCTTGTCAAGTGTACCGAACA
CCTCCTCTCTGCTGCTGTGCCCCTCTAAACATCCGCGGACGTAAATACTG
CAGGGGTTTCGACCCGGACGGGGCGGACCGACTACAGCTGCTGGACGCGG
TGATGCAGCTCCTGGACTACGAGTACGCCACCGGAGAGGACCTCCGCGAG
ATGGAGTACATTCCGGACGACGGCTCGGCGGCGGCGGCGGCGGAAACGGC
GGCCGCCGACCTCGAAGCGGCCGCAGCCAACGCCGCCGCCGCTGCCTTAG
CCGCGGAGGCGGAAGCAGCCGCCTTGGCGGCTGCTGCGGGGACCGGGGGC
GAAGCAGGGCTGGAGGAGGAGTACGCGTCGGCGGGTAGAGAAGACGGGGA
CGTTGATTCGCCCGCGGGTGTTGAGTCGGGGGGGGTGGGCAACGACGAGG
AGGAAGCGTCTGATGATGCGATCGCCCGAGAGGTGATCGAGGAGTGCAGC
TCCTCTTCCGTCGCCTCTTCCTTTCCCGTGGGTGGGCGTGGGAAGGAGGT
AGCAGCTTACGACGAGAGCACACTGCTCGGGTACGCGCACGGCCTAGCCA
CGGAGGTGCTCCGCACGATACGCAGGGACCTGAACTCCTTGGTGGGAATG
CTGCCCGAACCGGTGGAGAGGCCGGTCCGGGAGGCGGCCGCGTTCGTAGC
GAACACGGCCACGAGATTCGTGGGGCCGGCAGTGCAGAAGGCGGAGCGGT
ACACGCGAGGGCTGCGGCGGGGAGCCGGGAAGACCGCGGGGAAGGCCGTG
GTGGCGCTGAAGGACGAGGTGGTGCCGAGGGTCTGGACGGGGGTCAGGCG
CGCGGCGTCGAACGCGAAGCGGCGGTTGGAAGACGCCATAGCAGCCCGGA
AGGAGAGGAGCGAGCAGAGGCGCGAGCAGCACGAGCAGGAGGAGGGTAGA
GTACAACGCGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1617:9733..11597+

>mRNA_Ecto-sp13_S_contig1617.4496.1 ID=mRNA_Ecto-sp13_S_contig1617.4496.1|Name=mRNA_Ecto-sp13_S_contig1617.4496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1617:9733..11597+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTCCTGGTGTTGCTTGCAGCTGTGGCAGCGGGCATTGTGTTGCA
GCCTTCGGGCGTTGCCGCTGCGGACGAAGGCGTCCAGCAGCAGGCATTTC
GCTGTGAGAGCGAGGAAGATTTGGACGGCTCGGCTTGCAGGGTCGACATG
CTGCCGGACTCAGCGCTGGCGGAGATGGTTTACGAGAGGGGTTTCGACCC
GGACGGGGCGGACCGACTACAGCTGCTGGACGCGGTGATGCAGCTCCTGG
ACTACGAGTACGCCACCGGAGAGGACCTCCGCGAGATGGAGTACATTCCG
GACGACGGCTCGGCGGCGGCGGCGGCGGAAACGGCGGCCGCCGACCTCGA
AGCGGCCGCAGCCAACGCCGCCGCCGCTGCCTTAGCCGCGGAGGCGGAAG
CAGCCGCCTTGGCGGCTGCTGCGGGGACCGGGGGCGAAGCAGGGCTGGAG
GAGGAGTACGCGTCGGCGGGTAGAGAAGACGGGGACGTTGATTCGCCCGC
GGGTGTTGAGTCGGGGGGGGTGGGCAACGACGAGGAGGAAGCGTCTGATG
ATGCGATCGCCCGAGAGGTGATCGAGGAGTGCAGCTCCTCTTCCGTCGCC
TCTTCCTTTCCCGTGGGTGGGCGTGGGAAGGAGGTAGCAGCTTACGACGA
GAGCACACTGCTCGGGTACGCGCACGGCCTAGCCACGGAGGTGCTCCGCA
CGATACGCAGGGACCTGAACTCCTTGGTGGGAATGCTGCCCGAACCGGTG
GAGAGGCCGGTCCGGGAGGCGGCCGCGTTCGTAGCGAACACGGCCACGAG
ATTCGTGGGGCCGGCAGTGCAGAAGGCGGAGCGGTACACGCGAGGGCTGC
GGCGGGGAGCCGGGAAGACCGCGGGGAAGGCCGTGGTGGCGCTGAAGGAC
GAGGTGGTGCCGAGGGTCTGGACGGGGGTCAGGCGCGCGGCGTCGAACGC
GAAGCGGCGGTTGGAAGACGCCATAGCAGCCCGGAAGGAGAGGAGCGAGC
AGAGGCGCGAGCAGCACGAGCAGGAGGAGGGTAGAGTACAACGCGATTGA
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