mRNA_Ecto-sp13_S_contig16166.4494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16166.4494.1
Unique NamemRNA_Ecto-sp13_S_contig16166.4494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 4.720e-129
Identity = 189/204 (92.65%), Postives = 191/204 (93.63%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPSAARMFYGQRGRTSSFQGGLGGVAPPGVPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQLRASPYRLLRCIISDPEPAPDS 612
            +FMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPA P QVAAAVPGAPSAARMFYGQ        GGLGGVAPPG P V AGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHA+LARALDDESQLRASPYRLLRCIISDPEPAPDS
Sbjct:   39 QFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPPTQVAAAVPGAPSAARMFYGQ--------GGLGGVAPPGAPPVAAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHASLARALDDESQLRASPYRLLRCIISDPEPAPDS 234
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.600e-51
Identity = 104/187 (55.61%), Postives = 124/187 (66.31%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPS-AARMFYGQRGRTSSFQGG-LGGVAPPGVPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQLRA 555
            +F+ E+GL  SYTGGLSSYAL L+VARYLQEQ++ +D+GSLL GFLDF+GN FDPR TGISV R  YFSR A  P + P +AA V  +P    ++FY       S  G  +G  A  G  T        G    +PYRFDPLFIEDP+ L NNVG NCFR+YQI+RAWSDAHAAL RA+D      A
Sbjct:  168 QFLKERGLCESYTGGLSSYALVLLVARYLQEQSTHLDAGSLLRGFLDFFGNTFDPRTTGISVTRRCYFSRLAQTPTTWPPLAAPVQPSPGMGGQVFYPPPPPLPSHPGPHMGAGAAAGGFT--------GGREGVPYRFDPLFIEDPLALGNNVGRNCFRIYQIKRAWSDAHAALTRAMDSTDHFAA 346
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 3.590e-50
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPSAARMFYGQ 294
            +FMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPA PPQVAAAVPGAPSAARMFYGQ
Sbjct: 1826 QFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAPPPQVAAAVPGAPSAARMFYGQ 1923
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: W7U5Q9_9STRA (Nucleotidyl transferase domain protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5Q9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.580e-37
Identity = 96/199 (48.24%), Postives = 115/199 (57.79%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPSAARMFYGQRGRTSSFQGGLGGVAPPG--VPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQLRASPYRLLRCIISD 591
            +FM E+GL  SY+GGLSSY L LMVARYLQEQ++ MD+G+LLLGFLDFY NHFDPR  GIS  +  YFSRS+        +               G   R S   GG G V  P   V       P  G  +  PY+FDPL+IEDP+  SNN+G NCFR++QIQRAW+DA     R LD  S       RL R + SD
Sbjct: 1184 QFMKERGLMESYSGGLSSYGLVLMVARYLQEQSNAMDTGALLLGFLDFYSNHFDPRSMGISTNQRCYFSRSS----QQSHLXXXXXXXXXQNMPPLGSNRRVSL--GGAGDVHLPYYYVHQQQQVRPAGGSFLENPYKFDPLYIEDPIRPSNNIGRNCFRIFQIQRAWNDAW----RDLDPGSS--GGVPRLNRIVQSD 1370
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A1Z5KCZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCZ8_FISSO)

HSP 1 Score: 146 bits (368), Expect = 3.330e-35
Identity = 94/228 (41.23%), Postives = 123/228 (53.95%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR-SAPLPASPPQVAAA-----------VPGAPSAARMFYGQRGRTSSFQGGLGGV---APPGVPTVTAGI---------PGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQLRA-----SPYRLLRCIISDPE 597
            +F+  +GL  +YTGGLS+Y L LMVARYLQEQ S  D GSLL+GFLDFYGN+FDPR  GISV   +YFSR SA + A+P  V              VP      R  +  +G   + +G    V   +   +P  T                D   MPY  DPL IEDP+N SNNVG N FR++ + RA+SDAH AL  +L+ +          S Y LL+C++ + +
Sbjct: 1270 QFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSIGISVKNRQYFSRLSAAMGAAPQSVPTNETAWRPIGPNHVPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATSIPVATNNNYFRKPLTQHNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLEWDLHSNVEFQDDSEYPLLKCLLQNED 1497
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A1Z5KF72_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF72_FISSO)

HSP 1 Score: 143 bits (361), Expect = 2.800e-34
Identity = 94/234 (40.17%), Postives = 121/234 (51.71%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSA----PLPASPPQVAAA--------VPGAPSAARMFYGQRGRTSSFQGGLGGVA------------------PPGVPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQLRA-----SPYRLLRCIISDPE 597
            +F+  +GL  +YTGGLS+Y L LMVARYLQEQ S  D GSLL+GFLDFYGN+FDPR TGISV   +YFSR +    P P S P    A        +P      R  +  +G   + +G    V                   PP  P          D   MPY  DPL IEDP+N SNNVG N FR++ + RA+SDAH AL  +L+ +          S Y LL+ ++ + +
Sbjct: 1269 QFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSTGISVKNRQYFSRLSAVMGPAPQSVPTNETAWRPIGANHLPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATPIPVTAKNNHHRKPPTQPNNEI------DHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLEWDLHSNVEFQDDSEYPLLKFLLQNED 1496
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A7S2Q1J0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1J0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.200e-33
Identity = 89/205 (43.41%), Postives = 117/205 (57.07%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQM-DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPSAARMFYGQRGRTSSFQGGLGGVAPPGVPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQLRAS-----PYRLLRCIISDPE 597
            +F++++GL  +YTGGLSSY L LMVARY QEQ+    D GSLL+G LDFYGN F+PR TGISV   RYFSR      +  Q A     A    R  +    R SSFQ              TA  P        P +FDP+++EDP+N  NNVG N FR++Q+QRA+SDAH AL  AL+ +    +       Y LL+C++ + +
Sbjct: 1310 QFLLDRGLLTAYTGGLSSYCLFLMVARYCQEQSPTWNDRGSLLMGLLDFYGNFFEPRTTGISVRTRRYFSR---FGENQHQEARRNNAATKPPR--FQPLNRQSSFQ--------------TAQQPN----QLQPGKFDPIWVEDPLNPGNNVGRNAFRIFQVQRAFSDAHRALVAALEWDINSMSEFGEDGEYPLLKCLLQNED 1491
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A7S2U5F7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5F7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.100e-33
Identity = 99/258 (38.37%), Postives = 128/258 (49.61%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR---------------SAPLPASPPQVAAAVPGAPSAARMFYGQRGRTSSF--QGGLGGVAPPGVPT--VTAGIPGWG-------------------DMMRMPYR--------------FDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALD----DESQLR-ASPYRLLRCIISDPE 597
            +F++++GL  +YTGGLSSY L LMV RYLQEQ S    D GSLL+GFLDFYGN FDPR TGISV    YF R                 PL    PQV+   P     +  F     R  SF  +G +       VP   +  G P                      D++ MP+R              FDPLFIEDP++  NNVG N FR++Q+QRA++DAH AL  +L+     E  L   S Y LL+C++ + +
Sbjct:  921 QFLLDRGLLTAYTGGLSSYCLFLMVTRYLQEQQSSSWTDCGSLLMGFLDFYGNSFDPRATGISVAGRAYFPRPNHEYQGVASVQNGHKQPLWNVHPQVSMPEPLVSGPSMSFTKNILRRHSFSEKGNMDSNPSSNVPNSAIMGGSPKHSTRPPRFESSQSLGPQNLHQDILHMPHRHVGVPIMSSARPYTFDPLFIEDPLSAGNNVGRNAFRIFQVQRAFADAHRALVASLEWDMGSEGDLNDGSKYPLLKCLLQNED 1178
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A7S2PBI3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PBI3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.990e-32
Identity = 89/237 (37.55%), Postives = 120/237 (50.63%), Query Frame = 1 
Query:    1 KFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAA----------VPGAPSAARMFYGQRGRTSSFQGGLGGVAPP------------------GVPTVTAG----IPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALD----DESQLRASPYRLLRCIISDPE 597
            +F+ ++GL  +YTGGLSSY L LMV RYLQEQ +    D GSLL+GFLDFYGN FDPR  GISV + +YFSR     A   Q   +          VP   +  R       R  +    L G A                      P+ T G    +         PY FDPLF+EDP++ SNN+G N FR++Q++RA++DAH AL   L+    D  +     Y LL+C++ + +
Sbjct:   65 QFLQDRGLLTAYTGGLSSYCLFLMVTRYLQEQPNLAWSDCGSLLMGFLDFYGNCFDPRSVGISVKKRKYFSRHVDHVALAKQSNNSWAQQQSNQWLVPHDNALERRHSFNEKRDYALNDSLIGSANSLSSFSKQCQKLHHQQSSGASPSRTHGRKNKLQQQEQPAAKPYTFDPLFVEDPLSESNNIGRNAFRIFQVKRAFADAHRALIATLEWDMHDTPEDEKCQYPLLKCLLQNED 301
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BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Match: A0A7S3JPY7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.540e-30
Identity = 80/180 (44.44%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:   10 MEKGLSVSYTGGLSSYALTLMVARYLQEQTSQ-MDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPSAARMFYGQRGRTSSFQGGLGGVAPPGVPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHAALARALDDESQ 546
            + +GL  SYTGGLSSYALTL+VARYL EQ S+  D G+LLLGFLDFY + FDPR TGISVGR  +F+R A L  +P              R     RG                                  + FDPL++EDP++  NNVG NCFR+ QIQRAWS+A  AL  A+  +S+
Sbjct: 1132 VNRGLCASYTGGLSSYALTLLVARYLHEQPSRPTDPGALLLGFLDFYAHRFDPRKTGISVGRRCFFAR-AELGTAP--------------RHAVNHRGS---------------------------------FHFDPLYVEDPLSPGNNVGRNCFRIAQIQRAWSEAFFALTEAIRRQSR 1263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16166.4494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0T1_9PHAE4.720e-12992.65PAP-associated domain-containing protein n=1 Tax=E... [more]
A0A835ZHQ3_9STRA4.600e-5155.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHG7_ECTSI3.590e-5097.96LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7U5Q9_9STRA4.580e-3748.24Nucleotidyl transferase domain protein n=4 Tax=Mon... [more]
A0A1Z5KCZ8_FISSO3.330e-3541.23Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KF72_FISSO2.800e-3440.17Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2Q1J0_9STRA3.200e-3343.41Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2U5F7_9STRA4.100e-3338.37Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2PBI3_9STRA9.990e-3237.55Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3JPY7_9STRA4.540e-3044.44Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16166contigEcto-sp13_S_contig16166:605..3861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score184.9
Seed ortholog evalue3.8e-44
Seed eggNOG ortholog2880.D7FHG7
Model size994
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
Cds size609
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16166.4494.1prot_Ecto-sp13_S_contig16166.4494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16166 984..3855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462853.2489667-UTR-Ecto-sp13_S_contig16166:604..9831681462853.2489667-UTR-Ecto-sp13_S_contig16166:604..983Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16166 605..983 -
1681462853.3015912-UTR-Ecto-sp13_S_contig16166:3855..38611681462853.3015912-UTR-Ecto-sp13_S_contig16166:3855..3861Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16166 3856..3861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462853.2681756-CDS-Ecto-sp13_S_contig16166:983..11911681462853.2681756-CDS-Ecto-sp13_S_contig16166:983..1191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16166 984..1191 -
1681462853.2769547-CDS-Ecto-sp13_S_contig16166:1905..20181681462853.2769547-CDS-Ecto-sp13_S_contig16166:1905..2018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16166 1906..2018 -
1681462853.2858903-CDS-Ecto-sp13_S_contig16166:2747..29611681462853.2858903-CDS-Ecto-sp13_S_contig16166:2747..2961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16166 2748..2961 -
1681462853.2941115-CDS-Ecto-sp13_S_contig16166:3781..38551681462853.2941115-CDS-Ecto-sp13_S_contig16166:3781..3855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16166 3782..3855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16166.4494.1

>prot_Ecto-sp13_S_contig16166.4494.1 ID=prot_Ecto-sp13_S_contig16166.4494.1|Name=mRNA_Ecto-sp13_S_contig16166.4494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNH
FDPRLTGISVGRSRYFSRSAPLPASPPQVAAAVPGAPSAARMFYGQRGRT
SSFQGGLGGVAPPGVPTVTAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNV
GHNCFRVYQIQRAWSDAHAALARALDDESQLRASPYRLLRCIISDPEPAP
DS*
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mRNA from alignment at Ecto-sp13_S_contig16166:605..3861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16166.4494.1 ID=mRNA_Ecto-sp13_S_contig16166.4494.1|Name=mRNA_Ecto-sp13_S_contig16166.4494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16166:605..3861- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTTCATGATGGAGAAAGGCCTGAGTGTCAGCTACACCGGAGGGCTATC
GTCGTACGCGCTTACCCTCATGGTCGCAAGGTGCACGGGTGTTCGGGGGG
ATACATACATAGAACGATCACGCGCCTTCACGCCGCCGCAGCAGGACGTA
CAGACAGAGCAATCCTACGTAGCGGTCGCTTTTGTGTCAGATCAACCGGG
TTCGTGACGGCGAATGTCTCGCCAGTGGTGGCGTGGTCGTCTCAGCCGGC
TGCTGTTCTTTGAACTTTGAGTAAAAGGCGTTTTCCTTTCCTTGCGGTAC
AGCAGTAGATGGCCCTGTGTAGTGCCGGCCGAATAGTGCCACATTCCGGT
GTAGCGCCGGTCAAATCTCAGGACACGAGTGAGTGTCCACTCCCATACTA
AAACCTAGACATGTATCCCTGAATAGTGCCGGTGGCCCGGTACAGTACCG
GTAAAACGTCTGGACACATACCGGCACTACACAGGGCCCACTACTGTACT
GTATTGGCGCAGCTCTTTCTTTTTCTACTTTTAGGGATGTTCCGCCCCCC
TCGAAAGGACGACCGAAATCGACTCCACAATTCAGCACAAGAGACAAAGA
TAACATGTTTGATGACGCGACCAACCCCCCCCCCCCCCCCCCCCCCCCTC
TTCCTCTCCCCTTCCGGTCCACCCCACCTCCGCAGCACNNNNNNNNNNAA
AAGAAGCCCCAAAACCTCCCCACAATTCAACAAAAAAAAAAAAAAAAATC
TTGTCGATGACTCGCCCAACCCCCCCCCCCCCCCCCACTCCGTTTTATGT
TCCCCGTCTGGGTCAACCCTTACGACGACGCCCACGACAACCGCCGGACT
GCTGTCATCATCTCGAAACGAAAAAAAAATCAACCGACGACACCAAAAAG
GTACCTTCAAGAGCAAACCAGCCAGATGGACTCGGGCTCTCTCCTCCTCG
GCTTCCTGGACTTCTACGGCAACCACTTCGATCCCCGGCTAACCGGCATC
AGCGTCGGCCGCAGCCGTTACTTCTCCAGGAGCGCGCCCCTGCCCGCGTC
CCCCCCTCAGGTGGCGGCGGCGGTTCCCGGGGCCCCCAGCGCTGCGCGGA
TGTTCTACGGCCAGGTGCGTTTTCGTTGGTTGTTCATTATTGGTTGCGTG
GGCCGGTTTAGCGGCCCTACCCTTCGGGTCAAACATATATGAGTGTTTGT
ACCTTTTTTTGAGATAAAATAGCCTGTTACCACGGGAATCGACCGCGTCA
AGTGTTAGACTAGTACGGACAGAGGGAGGTACTGGGTAGAGAGATCGGAA
CGGTTTTTAATGTGAAGACGACAACAACATCAGATGCATGTCGGGAGGGA
ATATGATGAGTATTTGGGGCAGGTCGCTGTTGCCAGTATGCACAGCGGGG
GTGCAGTTGTGTCGCCACGCGATTGTTGTGATCGCTTTGCAGAGCATGTC
GCCAAACAGGAGTTCGCGGCTTGGCCGGGGTCTCCACCGTTGTATGGGCG
GATATATCGCTTCCAGGTGTGGCGCAGGTTGCTGCCTGTCCCTACCGCCA
CCGCTTGCCAATTAAACCGGGCTAGTGCAACGCGCGAGCGAGACAGCAGA
GACGCAGAGACAGCGAAGCTTACACCATGCCGTTCCGTGATATGCTCTCC
AGAGACTACCGACGCCCCCTTGACCCACAAACGAAAGCCCTAGTTCTCTT
TCTTCCGCGTGTTTAATGCCCCCTGTTATTTCTTTTTAGCGGCTTGGTAT
TCCTTGCCTACCCTCTCCTCTCGTTCGTGTGTTGAACTCGCGTACGCACG
CCTCCCACCCTCGTTTGCTGCTCTCTCTTGACGGGTCGAGCAGAGGGGCC
GAACTTCATCTTTCCAGGGAGGTTTGGGTGGAGTGGCGCCTCCGGGAGTG
CCGACCGTGACCGCCGGCATCCCCGGGTGGGGCGACATGATGAGAATGCC
ATACCGGTGAGAAAACCCCGCCAGCAGTGAGGGCGACATGCACCCTTTCT
TGTCGTACAGCTAGCGTGGTACAGCAGTAGCGCCAAGCGCGACCGTTAGT
ATTGGACCAAGCTCACGGCAGCTTGAGCGGAGACGCTGCCTTTAGGGAGG
ACATGCGCCCCCCGTAACTGCCAAGCAGAACAGCAGTACCCTGTTCACTA
AAGAAGGGTTTGGTTAAGGGTCGCGAACGCCTCTGAGGAAACTACAACAA
AGGCCCTCCGCTGGAACGCTTTGTGAACACATGTTGACACCAAGTTTCTC
ATCGTGTGACGGACCCCGTCATTTCTCACCGGATGCCCCCCACGCCCCCC
ACCGTTTGGTTAGCGAGGAAGCTTAATCAACCCACGGCATGTCTCGTGTG
GCACAACAATCGCAAGGATGATGACCAGCTTTTGGTTCATCCTTTAAAAA
TGTAGCTTGGGTCGGTGAAAACCCGGCATTTCGCCCCGTCCCCGCATTGT
GCGGATGCAAGGTCGATGCCTAACGACTATAACATGAGTCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCATGCCCTTACNNNNNN
NNNNGGAAACCCGGGTTTTCCCCCCGTCCCCCCGTTTTGCGGATGGAAGG
CCCTGGCCCAAGAGGTATAAAATGGCTCCCCCCCCCCCCCCCCTCCCTTC
GCCTGGATGACCATTGCAAGGTTCGACCCTCTCTTCATCGAGGACCCGAT
GAACCTGAGCAACAACGTGGGCCACAACTGCTTCCGCGTGTACCAGATCC
AGAGGGCCTGGAGCGATGCCCACGCGGCCCTTGCGCGTGCGCTGGACGAT
GAGTCGCAACTCCGCGCCAGCCCTTACCGCTTGCTGAGGTGCATCATTTC
TGACCCGGAGCCTGCCCCGGACAGCTGATCATGCTCATGCCTCACTTGGT
TCTCTCGGTTGTTTTGTTCTTCAAGCATGTGACAACCCCAATAGCTAAAG
CTGATGTTGTTTGGCTGTTTTTTTTGTTTGTCGATTGATTTGTTCGGTGA
CTTTCTTGTTTTGTTTTATTCTACAAAAACACGGCATGCGAATTTTGGTG
GTTCGTCTATAACTCGATGCGGTTTTGCGTTGGGTTTGATGGAGGCGGAA
CCAATAGGGGAATTGTTGTCACATCAAAGTTTACTGATTGGACGATTGAT
CTGCCAGTTGGTGGTGAGGCCGCTACTAGACACACTTTCTTGCGCGGGTA
AGTCCGTTTTTGCGGTGCGTTTGTATGTAAACGCTAGATAGGCTTCTAGT
TGTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16166:605..3861-

>mRNA_Ecto-sp13_S_contig16166.4494.1 ID=mRNA_Ecto-sp13_S_contig16166.4494.1|Name=mRNA_Ecto-sp13_S_contig16166.4494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16166:605..3861- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGAGAAAGGCCTGAGTGTCAGCTACACCGGAGGGCTATCGTCGTA
CGCGCTTACCCTCATGGTCGCAAGGTACCTTCAAGAGCAAACCAGCCAGA
TGGACTCGGGCTCTCTCCTCCTCGGCTTCCTGGACTTCTACGGCAACCAC
TTCGATCCCCGGCTAACCGGCATCAGCGTCGGCCGCAGCCGTTACTTCTC
CAGGAGCGCGCCCCTGCCCGCGTCCCCCCCTCAGGTGGCGGCGGCGGTTC
CCGGGGCCCCCAGCGCTGCGCGGATGTTCTACGGCCAGAGGGGCCGAACT
TCATCTTTCCAGGGAGGTTTGGGTGGAGTGGCGCCTCCGGGAGTGCCGAC
CGTGACCGCCGGCATCCCCGGGTGGGGCGACATGATGAGAATGCCATACC
GGTTCGACCCTCTCTTCATCGAGGACCCGATGAACCTGAGCAACAACGTG
GGCCACAACTGCTTCCGCGTGTACCAGATCCAGAGGGCCTGGAGCGATGC
CCACGCGGCCCTTGCGCGTGCGCTGGACGATGAGTCGCAACTCCGCGCCA
GCCCTTACCGCTTGCTGAGGTGCATCATTTCTGACCCGGAGCCTGCCCCG
GACAGCTGA
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