mRNA_Ecto-sp13_S_contig16165.4493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16165.4493.1
Unique NamemRNA_Ecto-sp13_S_contig16165.4493.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16165.4493.1 vs. uniprot
Match: D7FX00_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX00_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 5.160e-88
Identity = 200/244 (81.97%), Postives = 208/244 (85.25%), Query Frame = 1 
Query:  355 VPRGTAAERGGGSRPLSDADPFGSNSGRHGAPPSQSAQQQGQGGRASRGSKXGLSRRNSFGATSRRGTGRXXXXXXXXXXXXXD-----LEGDSGMMRTASGGSLRGVGGFASRNQRQQQQYRGRDSYDNTYD--DXXXXXXXXXXXXXXXXXXTGYDSDTMSVMDQDALRASMRKRGARGTAGAGGRRGENVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQVGGFFV 1065
            VPRGTAAERG GSRPLS+ADPFGSNSGRHGAPPSQSAQQQGQGGRASRGS X                  XXXXXXXXXXXXX       EGDSGMMRTASGGSLRGVGG+ASRNQRQQQQ RGRD YDNTYD  +XXXXXXXXXXXXXXXXXX GYDSDTMSVMDQDA+RASMRKRGARGTAGAGGRRG+ V+YIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPA++ G  V
Sbjct:   54 VPRGTAAERGRGSRPLSEADPFGSNSGRHGAPPSQSAQQQGQGGRASRGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEGDSGMMRTASGGSLRGVGGYASRNQRQQQQRRGRDPYDNTYDAEEXXXXXXXXXXXXXXXXXXAGYDSDTMSVMDQDAIRASMRKRGARGTAGAGGRRGDTVDYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAKIRGVTV 297
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BLAST of mRNA_Ecto-sp13_S_contig16165.4493.1 vs. uniprot
Match: A0A6H5JUS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS7_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 2.630e-56
Identity = 125/147 (85.03%), Postives = 132/147 (89.80%), Query Frame = 1 
Query:  625 MMRTASGGSLRGVGGFASRNQRQQQQYRGRDSYDNTYDDXXXXXXXXXXXXXXXXXXTGYDSDTMSVMDQDALRASMRKRGARGTAGAGGRRGENVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQVGGFFV 1065
            MMRTASGGSLRGVGG ASRNQRQQQ +RGRD  D+TYDD XXXXXXXXXXXXXXXXXTG+DSDTMSVMDQDA+RASMRKRGAR TAGAGGRRG+ VE     +RARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQ+ G  V
Sbjct:    1 MMRTASGGSLRGVGGNASRNQRQQQ-HRGRDPCDDTYDDEXXXXXXXXXXXXXXXXXTGFDSDTMSVMDQDAIRASMRKRGARATAGAGGRRGDTVE-----QRARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTV 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16165.4493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX00_ECTSI5.160e-8881.97PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JUS7_9PHAE2.630e-5685.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16165contigEcto-sp13_S_contig16165:549..3777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score288.5
Seed ortholog evalue4.2e-75
Seed eggNOG ortholog2880.D7FX00
Model size1065
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2CMNN@1,2QR1W@2759
Cds size1065
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462853.1945496-CDS-Ecto-sp13_S_contig16165:548..6801681462853.1945496-CDS-Ecto-sp13_S_contig16165:548..680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16165 549..680 -
1681462853.204393-CDS-Ecto-sp13_S_contig16165:1209..16021681462853.204393-CDS-Ecto-sp13_S_contig16165:1209..1602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16165 1210..1602 -
1681462853.2123206-CDS-Ecto-sp13_S_contig16165:2835..30221681462853.2123206-CDS-Ecto-sp13_S_contig16165:2835..3022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16165 2836..3022 -
1681462853.220544-CDS-Ecto-sp13_S_contig16165:3424..37771681462853.220544-CDS-Ecto-sp13_S_contig16165:3424..3777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16165 3425..3777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16165.4493.1prot_Ecto-sp13_S_contig16165.4493.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16165 549..3777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16165.4493.1

>prot_Ecto-sp13_S_contig16165.4493.1 ID=prot_Ecto-sp13_S_contig16165.4493.1|Name=mRNA_Ecto-sp13_S_contig16165.4493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
GPQPVPSGGGGGGGSADEISPFDFDAVAAALPAVSAAAATGRRVSRGSAG
SSSAGDEGRRGGGGSAQQQQQQDAGPGGRGRATTSSSNSSGGRGRAPPST
AGELPARLSRSSRSRSVSVPRGTAAERGGGSRPLSDADPFGSNSGRHGAP
PSQSAQQQGQGGRASRGSKGGLSRRNSFGATSRRGTGRGGGGGAGTGAGG
GDLEGDSGMMRTASGGSLRGVGGFASRNQRQQQQYRGRDSYDNTYDDEDD
DERERGNDEDDEDDDTGYDSDTMSVMDQDALRASMRKRGARGTAGAGGRR
GENVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQV
GGFFV
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mRNA from alignment at Ecto-sp13_S_contig16165:549..3777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16165.4493.1 ID=mRNA_Ecto-sp13_S_contig16165.4493.1|Name=mRNA_Ecto-sp13_S_contig16165.4493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3229bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16165:549..3777- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCCACAGCCGGTGCCAAGCGGCGGCGGCGGCGGCGGCGGCAGCGCGGA
CGAGATCAGTCCTTTCGACTTTGACGCCGTCGCGGCCGCCTTGCCCGCCG
TCAGCGCTGCCGCCGCGACGGGGCGGCGAGTCTCGAGAGGTAGCGCCGGC
AGCAGCAGCGCTGGCGACGAAGGGAGAAGAGGAGGGGGGGGGTCGGCGCA
GCAGCAGCAGCAGCAGGACGCGGGGCCAGGGGGCCGGGGCCGGGCCACCA
CTAGCAGCAGCAACAGCAGTGGCGGTAGGGGCCGCGCGCCGCCCTCCACG
GCGGGAGAGCTGCCGGCGCGGCTGTCGCGGTCGTCTCGAAGTCGATCCGT
CAGGTGAGAAAACAACGTGTTTGTTTTTGTTGGTTGTTGTTGGCAAAATT
CACCAAAGGAAACAGCGAGTGTTTTCTTTGTTCTTTTGATTACGTTCTTG
TGTTTTTTCGAGCAACGTATTTTTGCTCCGGTCCCTAAGCCTCAGTTCGT
GGTACCACGTACCTGTCGTGACGGGTGTTCCGGGGGAGAAGGATCCAGCA
TTTGGTTCCTTTTGTTTTGTTCGGGCGAAAGTTCTGTGCGTGTTTCACCT
CGTCTCGGCGTAGCTGCTCCCTTTAACGACAATCAACAGTAATCTACAAC
AACGACAATATTGCCAACGATTTTTCCACCAACTCTAGCAGCAATAACCA
ACAACAACGACAGCATTGCCGAAACGATTGTAACAACAAAAATCAACAAC
GACAGCGTGCCGCGCGGGACCGCTGCCGAACGAGGGGGAGGGTCAAGGCC
GCTGTCGGACGCGGACCCGTTCGGCAGCAACAGCGGCAGGCACGGTGCCC
CGCCATCGCAGTCGGCACAGCAGCAGGGGCAAGGAGGGCGGGCATCTCGT
GGGAGCAAGGGGGGGCTGTCTAGGCGGAATAGCTTCGGAGCGGTGAGTTT
TTGACAAGGGAAGGGGGGGGGGGGGCGTACTTATGTTCGGCATGCCTTAG
CGGTTCGACCATTGACCACACGGGGATGGGGGGGGCGTAGTCATGTTTTT
GCATGCCTTAATTTTTAGACCATTGACCACGTGTCCTCGAGAGGACGGAG
CGTTGTCTCCACAGCACCCATCACCGATAGAAGAGGGGGTGTCGAAGGGA
GTACAGACACTGGTCGTTGTGATACACGCTGCTTGTTTTATGGGTCCACT
TGGCGGCGCAGCTTTTGGTTGCTCTTGTGGGTGTGGCGTCGCATCCCGCG
CCTCTTTTTGTGGGCGCTCTCTCGCGACCGTGTTGTATACCGTGTACTAC
ATATAGCTGCTGCCACTGCGGAGTTGTCGACGTGTAGGTTGGCTCGCCCT
TTTTCGTCGGCGGGCTCTTGTGATGAACATGGTGGCGGCGTGTCCAACAC
CTCTCCTGCAGAAGACGAGACAGACTGACAGGCGGGCAGACAAGACAAAC
ACACTCGACAGACGGATAGAGACGGAGAGTGGTGGACGTAGATTTGTTGC
GTGCCGGCGGTATGTCTACATCTCCCGTCTATACCAGAACAGATAATGTG
CTCGTTGGAGCCCGATCTCCGTGTGGCTGCGCCCTCAACGGTAGTAACCC
GCACACACACACATCCCTCCAGCCGCAAACACGCAAGAATGCGGCTTAGG
GTAGATGTGAAGCGTGTGTAGGCGCTCATATTGAGAGCCCTTTCATGGAG
AATGATGAGGTGCCACCGGTCGGTTGGAATCATGGGAGCGGTAGCCACCC
GGCTCCGAACGGATATTTCATGTGCAGTTGGTCCGCGACTCAGTGGCAAA
GTGCAACAAGTAACCGGGTGCTGATATTGGCTCGGTCCTCGGGTATGCTT
GTGTGTACCCCATTTTTTATTTAGCGTGTAAACCCGGTAAGAGGTCGTCG
ACGAAAGTCGGACTACCGGCTTGGGCGTCACCAGGTTCTGTGCGGAGATC
GTAGCTGTTTCTCAGCGTGTGGCCACCCACAAGCAACAACGGCCCTCTTT
GTCTCTTGCATTGTGTGTGTTCCCTGTTGGGGAAGGTGTTTAGATGTACC
CACGGATTACAGTCAATCGGCGTGCGGACAAACCCGGCTGTACTTTGGGC
AGAGATCGGTCGGAATGAACATCCACGACGACCATACCCCTTCCCTCCCT
CCCTCCCTCCCAATCGTTGCATTAGACCTCCCGGCGTGGGACGGGTAGAG
GGGGCGGAGGCGGTGCCGGCACCGGCGCCGGCGGAGGCGACCTCGAAGGA
GATTCCGGGATGATGAGGACGGCTTCGGGGGGGTCGTTGCGAGGAGTCGG
GGGCTTCGCGTCTCGCAACCAGCGGCAGCAGCAGCAATACAGGGGGAGGG
ACTCTTACGACAACACCTACGATGACGAGGACGACGACGAGAGAGAAAGG
GGCAACGACGAGGACGACGAGGACGACGACACGGGCTACGACTCGGACAC
TATGAGCGTGATGGATCAGGACGCCCTCCGAGCTTCCATGAGGAAGAGAG
GCGCCAGGGGGACGGCGGGGGCGGGGGGAAGGCGTGGCGAAAACGTCGAG
TACATCGTGGAGTTTGAGGTGAAGGGAGGGGGGGGAGGGGGGGGTTGTGC
CCGTTGTATCGTGTGATTGTGATTGTAATTGTGCATGTCGTTTATGTTTT
GAACTTTCTCTGCGGCGCGACGTCCGGGCTTGAATACATCATCTGTATTC
GATTGTCGGATGTTCGTCTCTAGCCCTGGCCTAGCAACTTGGTGGTGTCT
GCTTTTCGGTTGTGATGTGTTTGGCACGAACGGTGTGGCGAGCTGTGATT
TTGTTCGTACCGTCGGGAATTGGTGGCGGTTGCGTCTATGCAGGCGGTCG
TCGCTTCGGCGATGCCCGTGCGCGGTTTATTCTGTGTGCACTTTGTCGTT
TTGCTTTTTCTGTCAGGCAGGTGTGTATATATTTGTACCTTTCCTTTCAT
TTCTTGCTGCTTTTCCTTGGCTGTCTCTCTCCAGCGCGAGTGCGACGCCA
CTCATTCGCCATCCTGTCTTGGTTTCGGTTTGCCGTCGCTTCATGCTCGT
CAAGTTGATACTCCGATGTTCGTCTCTCCCCATCCCTTCTTCTCCAGAGA
GCAAGGAAGCTGGGCATGCTGTTGGAGCGGCACGACGAATGGCCCGATGG
AAGGGAGAAGCGGTCGGAGCGAGCGATTGTGAAAATGGTTGTCGACAGCG
GCCCGGCGCAGGTGGGTGGATTCTTTGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16165:549..3777-

>mRNA_Ecto-sp13_S_contig16165.4493.1 ID=mRNA_Ecto-sp13_S_contig16165.4493.1|Name=mRNA_Ecto-sp13_S_contig16165.4493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16165:549..3777- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCCACAGCCGGTGCCAAGCGGCGGCGGCGGCGGCGGCGGCAGCGCGGA
CGAGATCAGTCCTTTCGACTTTGACGCCGTCGCGGCCGCCTTGCCCGCCG
TCAGCGCTGCCGCCGCGACGGGGCGGCGAGTCTCGAGAGGTAGCGCCGGC
AGCAGCAGCGCTGGCGACGAAGGGAGAAGAGGAGGGGGGGGGTCGGCGCA
GCAGCAGCAGCAGCAGGACGCGGGGCCAGGGGGCCGGGGCCGGGCCACCA
CTAGCAGCAGCAACAGCAGTGGCGGTAGGGGCCGCGCGCCGCCCTCCACG
GCGGGAGAGCTGCCGGCGCGGCTGTCGCGGTCGTCTCGAAGTCGATCCGT
CAGCGTGCCGCGCGGGACCGCTGCCGAACGAGGGGGAGGGTCAAGGCCGC
TGTCGGACGCGGACCCGTTCGGCAGCAACAGCGGCAGGCACGGTGCCCCG
CCATCGCAGTCGGCACAGCAGCAGGGGCAAGGAGGGCGGGCATCTCGTGG
GAGCAAGGGGGGGCTGTCTAGGCGGAATAGCTTCGGAGCGACCTCCCGGC
GTGGGACGGGTAGAGGGGGCGGAGGCGGTGCCGGCACCGGCGCCGGCGGA
GGCGACCTCGAAGGAGATTCCGGGATGATGAGGACGGCTTCGGGGGGGTC
GTTGCGAGGAGTCGGGGGCTTCGCGTCTCGCAACCAGCGGCAGCAGCAGC
AATACAGGGGGAGGGACTCTTACGACAACACCTACGATGACGAGGACGAC
GACGAGAGAGAAAGGGGCAACGACGAGGACGACGAGGACGACGACACGGG
CTACGACTCGGACACTATGAGCGTGATGGATCAGGACGCCCTCCGAGCTT
CCATGAGGAAGAGAGGCGCCAGGGGGACGGCGGGGGCGGGGGGAAGGCGT
GGCGAAAACGTCGAGTACATCGTGGAGTTTGAGAGAGCAAGGAAGCTGGG
CATGCTGTTGGAGCGGCACGACGAATGGCCCGATGGAAGGGAGAAGCGGT
CGGAGCGAGCGATTGTGAAAATGGTTGTCGACAGCGGCCCGGCGCAGGTG
GGTGGATTCTTTGTA
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