mRNA_Ecto-sp13_S_contig16162.4491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A6H5KRW8_9PHAE (Ribosom_S30AE_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRW8_9PHAE) HSP 1 Score: 246 bits (629), Expect = 2.200e-80 Identity = 127/133 (95.49%), Postives = 129/133 (96.99%), Query Frame = 1
Query: 16 NSDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKPEEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPESEK 414
NSDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGL +LSEKTAEKDMDAAA EAADEDPFEDKYGDKPE M VMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEET+EVNVVYKRKSGGVGLIEPESEK
Sbjct: 137 NSDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLRALSEKTAEKDMDAAAVEAADEDPFEDKYGDKPEAMTVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETNEVNVVYKRKSGGVGLIEPESEK 269
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A6T7EQW1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7EQW1_9EUKA) HSP 1 Score: 114 bits (285), Expect = 4.230e-30 Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 28 MYASVDQVTDRIQRKLRRFKERK----VAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKPEEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPE 405
MYAS+D+++DR RKLR++KERK G + S + L E+ E++ AAE+ + + V++ KSFPMP ISV+EAV CLEYI HDFY FRN ET+E+NVVYKR SG VGLIEPE
Sbjct: 2 MYASLDKLSDRFGRKLRKYKERKRPRGAVGTQQLSSIDLLEEEGDEEEEADVAAESGTVPLAQTSW-------EVVRKKSFPMPPISVDEAVLCLEYIDHDFYAFRNAETNEINVVYKRNSGDVGLIEPE 124
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: Q7XYJ6_BIGNA (Ribosomal protein rpS22 (Fragment) n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYJ6_BIGNA) HSP 1 Score: 114 bits (286), Expect = 1.070e-29 Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = 1
Query: 31 YASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSL--SEKTAEKDMDAAAAEAADEDPFEDKYGDKPE------EMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPE 405
Y+S+D VTD + RKLR++KERK G R SG+ + ++ + D++ AA + D D +++Y PE +++V++ K FPMP IS+E+A CL+Y+ HDFY+FRN ET E+NVVY+R GGVGLIEPE
Sbjct: 38 YSSIDLVTDLVNRKLRKYKERKE-GKRTASGVRTFYTNDISDSSDVEGAAVQGQD-DVQQEEYSGIPEGYAPVEDVSVVRRKKFPMPPISIEDATLCLDYLDHDFYVFRNSETKEINVVYRRAEGGVGLIEPE 168
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A6V1KPF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KPF4_HETAK) HSP 1 Score: 115 bits (289), Expect = 2.570e-29 Identity = 69/135 (51.11%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 19 SDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAA--EAADEDPFEDKYGDKPEE--MAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPESE 411
S++MY ++D V+D I KLR++KE+++ RG TAE MD E D D ED Y D M V+K KSFPMP +SVE+AV LEYI HDFY+FRNE+T EVNVVYKR SGGVG I+PE +
Sbjct: 121 SEHMYGTIDLVSDTIFMKLRKYKEKRIDRKRG----------TAEARMDPVVLPEEVEDSDTEEDVYNDLDASVNMDVVKEKSFPMPPMSVEDAVVSLEYIDHDFYVFRNEKTSEVNVVYKRNSGGVGHIQPERD 245
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A835ZQC8_9STRA (Ribosomal protein rpS22, plastidal n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQC8_9STRA) HSP 1 Score: 115 bits (287), Expect = 7.700e-29 Identity = 63/131 (48.09%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 19 SDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKPEEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPESE 411
+D+MY+S+D V+DR+ RKLR++KER + R R+ + + + E+ +A+ + D +D G +M+V+K+KSFPMP +VE+AVT LEYI HDFY+FRN T EVNVVYKR GGVG I+PE +
Sbjct: 136 TDSMYSSIDLVSDRMGRKLRKYKERSLTQKRSRTSISEAAGEV-EEAFTPDSADGGEPDYADD--GLPHVDMSVVKSKSFPMPPCTVEDAVTALEYIDHDFYVFRNSATSEVNVVYKRNHGGVGHIQPERD 263
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A7S2CSI1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSI1_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.540e-28 Identity = 67/134 (50.00%), Postives = 85/134 (63.43%), Query Frame = 1
Query: 19 SDNMYASVDQVTDRIQRKLRRFKERK-----VAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKPEEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPE 405
S+NMYA++D V D + RKLR+FKERK + +R L ++ E + A A A + F D M+++K KSF M I+VE+AV CLEYI HDFY+FRN+ET EVNVVYKR SGGVG IEPE
Sbjct: 123 SENMYATIDAVADSLARKLRKFKERKDKKQSSSAIRDADALNLSEDEEVESPEEDAFAGAVEIPRFVD--------MSIVKQKSFNMEPITVEDAVLCLEYIDHDFYVFRNKETGEVNVVYKRNSGGVGHIEPE 248
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A7S2TTI5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TTI5_9EUKA) HSP 1 Score: 112 bits (279), Expect = 3.920e-27 Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 31 YASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKP------EEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPESE 411
Y+S+D VTD I RK+R++KERK G R SG+ + DA ED + ++ P E++++++ K FPMP I+VE+A CL+Y+ HDFY+FRN +T E+NVVY+R GGVGLIEPE++
Sbjct: 192 YSSIDLVTDLINRKMRKYKERKF-GRRTNSGVKTFYRDDISDSSDAGEMVQVGEDDVQGEFEPVPNDYKPMEDVSLVRKKKFPMPPITVEDATLCLDYLDHDFYVFRNADTKEINVVYRRAEGGVGLIEPEAQ 323
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: W7T4W9_9STRA (Sigma 54 modulation protein ribosomal protein s30ea n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4W9_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.390e-27 Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 1
Query: 19 SDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGD--KPEEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEP 402
+D MYAS+D V+ RI R LR+FK+RK+ G R E+ E +M++ A + E + D K +M V+K K F MPA+S +A+ CLEYIGHDFY+FRNE++ E+NVVYKRK GGVG+IEP
Sbjct: 217 TDYMYASIDLVSHRITRLLRKFKDRKI-GKRKEVNF----EEDGESEMESLGLTGAGAEGGEGGFQDPAKGVDMRVVKRKQFDMPAMSTADAIVCLEYIGHDFYVFRNEDSGEINVVYKRKLGGVGVIEP 341
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A835ZBG9_9STRA (Ribosomal protein S30Ae/sigma 54 modulation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG9_9STRA) HSP 1 Score: 110 bits (274), Expect = 6.590e-27 Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 19 SDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKPEEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPESE 411
+D+MYAS+D VTD + RKLR++KER + R R+ L ++ ++ K E +E+ FE G +M+V+K K FPMP +VE+AV + YI HDFY+FRN T E+NVVYKR GGVG I+PE +
Sbjct: 135 TDSMYASIDLVTDSMARKLRKYKERSLTQKRHRAPLSEIAGESEAKWTSDDGDE--EEEGFEGGDGVPRVDMSVVKKKEFPMPPCTVEDAVVAMAYIDHDFYVFRNSATGEINVVYKRNHGGVGHIQPERD 263
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Match: A0A6V3PVS7_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3PVS7_9EUKA) HSP 1 Score: 111 bits (277), Expect = 7.560e-27 Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 31 YASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAEAADEDPFEDKYGDKP------EEMAVMKTKSFPMPAISVEEAVTCLEYIGHDFYLFRNEETDEVNVVYKRKSGGVGLIEPESE 411
Y+S+D VTD I RK+R++KERK G R SG+ + DA ED + ++ P E++++++ K FPMP IS+E+A CL+Y+ HDFY+FRN +T E+NVVY+R GGVGLIEPE++
Sbjct: 191 YSSIDLVTDLINRKMRKYKERKN-GKRTNSGVKTFYRDDISDSSDAGEMLPIGEDDVQGEFEPVPNDYKPMEDVSLVRKKKFPMPPISIEDATLCLDYLDHDFYVFRNADTKEINVVYRRAEGGVGLIEPEAQ 322 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16162.4491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16162.4491.1 >prot_Ecto-sp13_S_contig16162.4491.1 ID=prot_Ecto-sp13_S_contig16162.4491.1|Name=mRNA_Ecto-sp13_S_contig16162.4491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp MYASVDQVTDRIQRKLRRFKERKVAGMRGRSGLGSLSEKTAEKDMDAAAAback to top mRNA from alignment at Ecto-sp13_S_contig16162:1188..3791- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16162.4491.1 ID=mRNA_Ecto-sp13_S_contig16162.4491.1|Name=mRNA_Ecto-sp13_S_contig16162.4491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2604bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16162:1188..3791- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16162:1188..3791- >mRNA_Ecto-sp13_S_contig16162.4491.1 ID=mRNA_Ecto-sp13_S_contig16162.4491.1|Name=mRNA_Ecto-sp13_S_contig16162.4491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16162:1188..3791- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |