mRNA_Ecto-sp13_S_contig16160.4490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16160.4490.1
Unique NamemRNA_Ecto-sp13_S_contig16160.4490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16160.4490.1 vs. uniprot
Match: D8LSQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ3_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 3.350e-185
Identity = 357/469 (76.12%), Postives = 367/469 (78.25%), Query Frame = 3 
Query:   36 MQQRRSLPPSSSTGRRGRQPQTPRSRPLCSWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGALHTSDDDNGLPEYSLRAPAPRGKVSERTGGNAVGAGQDAYVASVGRPGGNVDASGTRRPGTVGGAVGGXXXDRSGGDAGEETVVGSGGWKWTNKTAGPVRPXXXXXXXXXXXXXXXSLLSNPLGRDAPLQVAVMRPANAAGGGSSGTGMNSWRWPSDAGAGSGGSIGDVSEADSVVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXARKQRLKPWSTSGPCVVSCSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTPIDGAPVGXXXXXXXXLERCERAARACNLYQECTHVLLPXXXXXXXXXXXXXXXXXXXXXXXXXFAVLMHRAARDGSMAGVEAAXXXXXXXX------NGWGGPKGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGTVKEV 1424
            MQQRRSLPPSSSTGRRGRQPQTPRS PLC+WEVLGVATLLVLTIVNVCTYSERRAKFQLAHGG LHTSDDDNGLPE+SLR PAP+GKVSERTGG+  GAG D YVASVGRPGGNVDASGT+RP  VGG    XXX        EET+VGSGGWKWTNKT GPVRP  XXXXXXXXXXXXX     PLGRDAPLQVAV+RPAN AGGGSSGTGMNSWRWPSD GAGSGGSIG VSEA+S VGHFPCSLTEADDAPGPGHRGXXXXXXXXXXX   QRLKPWSTSGPCVVSCSPXXXXXXXX                 XXXX           XXXXXXX LERCERAARACNLYQECTHV+LP                         FAVLMHRAARDGSM GVEAA XXXXX        NGW GP+GGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKG VKEV
Sbjct:    1 MQQRRSLPPSSSTGRRGRQPQTPRSHPLCTWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGVLHTSDDDNGLPEHSLRPPAPQGKVSERTGGSEGGAGPDIYVASVGRPGGNVDASGTKRPDAVGGXXX-XXXXXXXXXXXEETMVGSGGWKWTNKTTGPVRPLSXXXXXXXXXXXXXP---TPLGRDAPLQVAVLRPANEAGGGSSGTGMNSWRWPSDVGAGSGGSIGGVSEAESAVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXX--QRLKPWSTSGPCVVSCSPXXXXXXXXSGARQLVEARGPEDRIGXXXXXXX--XXXXXXXXXXXXXGLERCERAARACNLYQECTHVMLPLGGGGGDGHSSGSGNRSGDKRNGGGFAVLMHRAARDGSMDGVEAAAXXXXXVSHAAGAGNGWSGPRGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEV 461
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16160.4490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSQ3_ECTSI3.350e-18576.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16160contigEcto-sp13_S_contig16160:852..3354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score549.7
Seed ortholog evalue1.4e-153
Seed eggNOG ortholog2880.D8LSQ3
Model size1451
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG OGs2EQKZ@1,2STKD@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-15_003020.1
Cds size1425
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.8980477-CDS-Ecto-sp13_S_contig16160:851..11381681462852.8980477-CDS-Ecto-sp13_S_contig16160:851..1138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16160 852..1138 -
1681462852.9090228-CDS-Ecto-sp13_S_contig16160:1345..23061681462852.9090228-CDS-Ecto-sp13_S_contig16160:1345..2306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16160 1346..2306 -
1681462852.924523-CDS-Ecto-sp13_S_contig16160:3151..33281681462852.924523-CDS-Ecto-sp13_S_contig16160:3151..3328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16160 3152..3328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.9397275-UTR-Ecto-sp13_S_contig16160:3328..33541681462852.9397275-UTR-Ecto-sp13_S_contig16160:3328..3354Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16160 3329..3354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16160.4490.1prot_Ecto-sp13_S_contig16160.4490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16160 852..3328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16160.4490.1

>prot_Ecto-sp13_S_contig16160.4490.1 ID=prot_Ecto-sp13_S_contig16160.4490.1|Name=mRNA_Ecto-sp13_S_contig16160.4490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=475bp
MSVMQQRRSLPPSSSTGRRGRQPQTPRSRPLCSWEVLGVATLLVLTIVNV
CTYSERRAKFQLAHGGALHTSDDDNGLPEYSLRAPAPRGKVSERTGGNAV
GAGQDAYVASVGRPGGNVDASGTRRPGTVGGAVGGGGGDRSGGDAGEETV
VGSGGWKWTNKTAGPVRPLSPPTPPTPPTPPTPSLLSNPLGRDAPLQVAV
MRPANAAGGGSSGTGMNSWRWPSDAGAGSGGSIGDVSEADSVVGHFPCSL
TEADDAPGPGHRGGGGGGGGNAATARKQRLKPWSTSGPCVVSCSPPSSSS
SAASGARQPEEAQGAEDRIGGGGVAVTPIDGAPVGGGGGGGGGLERCERA
ARACNLYQECTHVLLPPGGGGGDGHSSGSGNRSGKRRNDGGFAVLMHRAA
RDGSMAGVEAAAAHAAGGGNGWGGPKGGFTLDAKPRTYYVVSFGGSGSKM
LGGWLSERGKGTVKEVRRRFRRLV*
back to top

mRNA from alignment at Ecto-sp13_S_contig16160:852..3354-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16160.4490.1 ID=mRNA_Ecto-sp13_S_contig16160.4490.1|Name=mRNA_Ecto-sp13_S_contig16160.4490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16160:852..3354- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAAAGCGCGGCAACGTCTGTCATATGTCTGTGATGCAGCAACGACGG
TCACTGCCGCCGAGTTCCTCGACCGGACGGCGAGGCCGCCAGCCGCAGAC
GCCCCGATCCCGCCCGCTATGCTCGTGGGAGGTTCTCGGCGTCGCGACTC
TCTTGGTGCTGACCATCGTCAACGTCTGCACCTACAGCGAACGTCGGGCC
AAGGTTTGTGTGTTTTGTACGGACGGCAGCAGCAGAGTACATCGGAAGGC
TCAGCACCGAGAACCTGAAAGCACACAGAGAGAGACAGAGCTGTGCGTTG
TGATCTTAAACAGTTTTCAATGTTTTGTTTTGGACCCAAGATATTTATTT
GAGGACGGACGGTTATATTTCCCGCATCATTCCAAGGCGCCCGCAAGACG
AGGTTAGTCTCGGTGTCACCGCACAGCAGCCAACCCATGGCGATGGGATG
GCATACAGTGCCGACGCCATTGAGCAGCTTGGCTGCATTGACTCCGTGAG
TTCGTTCTTCAAGCGCGAATCCATTCGTGTAGACTCTGTACGTCACCCCG
CCAGGTATGATGTGTTGGACATGTTTTCCTGGGTTCCTCCGCATCTATCT
TTCATTTAGGGAGTGCAATTCCAGCTTACATTGTAACGACTGGAAGACAT
CCCCTTCGCTGCTGTGTGGTTTTATCTTGAACAGGTGGTATTTCTTTGAT
TGTCTGCATATTTCCCAAAAATCCAGCTTACGCAGCACAGCAGTATCATT
CGTACATGGAATTGGCGCAGCAGGACTCCTTGGTTCTCCAATATATCAAC
GATCGCTTAGTCCCGCCGTAAGGTCATTCATCATTGATAGAGTGTAGGAG
CTACCGTTGTTTGTTAACAACAAGTGACGGTAGAGGCGGGCCGTGGTCTA
GATACAGAAACATTTTCTCGAGAGTTGACGACAAAAATGGCGCAAGGCAT
ATAGTGACCTCAGTCGCCGTGTTGACTCAACAGACCGCAAGCGTGCTGTA
TAACTACTTTGGCTGGCTCCCTGCCACCCATCTCCTGCTTCTTCGTAGTT
TCAACTAGCTCATGGGGGCGCCCTCCACACCTCCGACGACGACAACGGCC
TGCCGGAATACAGCCTTCGCGCCCCCGCTCCACGGGGCAAAGTGTCGGAG
CGTACGGGCGGAAATGCGGTCGGGGCAGGGCAGGATGCATATGTCGCCTC
TGTTGGGCGGCCGGGCGGCAACGTTGACGCTAGCGGTACCAGGAGACCTG
GTACTGTTGGTGGTGCTGTTGGTGGTGGCGGTGGTGATCGTAGCGGGGGG
GATGCGGGCGAAGAGACCGTGGTCGGGAGCGGGGGCTGGAAGTGGACGAA
CAAGACCGCGGGTCCGGTACGCCCCCTGTCCCCGCCAACGCCGCCAACGC
CGCCAACGCCACCGACGCCATCGCTACTATCAAACCCGCTGGGGCGAGAC
GCTCCGTTGCAGGTGGCAGTCATGCGGCCAGCGAACGCCGCTGGCGGCGG
AAGCAGCGGCACGGGAATGAACAGCTGGCGGTGGCCTTCTGATGCGGGTG
CTGGCAGCGGCGGGAGCATCGGTGACGTTTCGGAGGCGGACTCGGTCGTC
GGCCACTTCCCTTGCTCGTTGACGGAAGCGGACGACGCTCCCGGCCCGGG
GCACCGCGGTGGCGGCGGCGGCGGCGGCGGCAACGCCGCCACCGCTCGTA
AGCAGAGGCTGAAACCGTGGTCCACCAGCGGGCCGTGCGTGGTGTCCTGC
TCTCCGCCCTCCTCCTCCTCCTCGGCCGCTTCGGGCGCGAGACAACCGGA
GGAAGCCCAGGGGGCGGAAGACCGGATCGGGGGAGGGGGGGTGGCCGTGA
CACCGATAGACGGTGCCCCCGTGGGCGGCGGCGGCGGAGGCGGCGGCGGC
CTGGAGCGCTGCGAGCGAGCCGCTCGCGCGTGCAACCTCTACCAGGAATG
CACGCACGTGCTGCTCCCTCCTGGGGGCGGCGGCGGAGACGGTCATTCGA
GCGGCAGCGGTAAGGAGGGGGAAGCGGGGGGAGGGGGGGGGGGAGGTTCG
CCTTCGCGATAAATTCAGTTTGTGGGGAAACAAATTCGGGAGGGGGTAAC
GCAGACCCAACCCCTAAACCCTAACCCAACTTCCCTCATTGTATTTTTTT
CCCAACATGTTTCGAAACGAAAAAAAAACTGCGAATGCGACTGGGCTCCG
GCGGACGGGGCGGTAGGCAACCGTAGCGGGAAGAGAAGAAACGACGGCGG
GTTCGCGGTCCTCATGCACCGGGCGGCGAGGGACGGGTCGATGGCAGGCG
TCGAGGCGGCGGCGGCACACGCAGCGGGGGGTGGGAATGGCTGGGGCGGT
CCCAAAGGCGGGTTCACGCTGGACGCGAAGCCAAGGACGTACTACGTTGT
GTCGTTCGGGGGTAGCGGGAGCAAGATGCTCGGGGGTTGGCTGAGCGAGC
GAGGCAAGGGGACGGTCAAGGAGGTGAGACGGCGATTCAGGAGACTTGTG
TGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16160:852..3354-

>mRNA_Ecto-sp13_S_contig16160.4490.1 ID=mRNA_Ecto-sp13_S_contig16160.4490.1|Name=mRNA_Ecto-sp13_S_contig16160.4490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1425bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16160:852..3354- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGTGATGCAGCAACGACGGTCACTGCCGCCGAGTTCCTCGACCGG
ACGGCGAGGCCGCCAGCCGCAGACGCCCCGATCCCGCCCGCTATGCTCGT
GGGAGGTTCTCGGCGTCGCGACTCTCTTGGTGCTGACCATCGTCAACGTC
TGCACCTACAGCGAACGTCGGGCCAAGTTTCAACTAGCTCATGGGGGCGC
CCTCCACACCTCCGACGACGACAACGGCCTGCCGGAATACAGCCTTCGCG
CCCCCGCTCCACGGGGCAAAGTGTCGGAGCGTACGGGCGGAAATGCGGTC
GGGGCAGGGCAGGATGCATATGTCGCCTCTGTTGGGCGGCCGGGCGGCAA
CGTTGACGCTAGCGGTACCAGGAGACCTGGTACTGTTGGTGGTGCTGTTG
GTGGTGGCGGTGGTGATCGTAGCGGGGGGGATGCGGGCGAAGAGACCGTG
GTCGGGAGCGGGGGCTGGAAGTGGACGAACAAGACCGCGGGTCCGGTACG
CCCCCTGTCCCCGCCAACGCCGCCAACGCCGCCAACGCCACCGACGCCAT
CGCTACTATCAAACCCGCTGGGGCGAGACGCTCCGTTGCAGGTGGCAGTC
ATGCGGCCAGCGAACGCCGCTGGCGGCGGAAGCAGCGGCACGGGAATGAA
CAGCTGGCGGTGGCCTTCTGATGCGGGTGCTGGCAGCGGCGGGAGCATCG
GTGACGTTTCGGAGGCGGACTCGGTCGTCGGCCACTTCCCTTGCTCGTTG
ACGGAAGCGGACGACGCTCCCGGCCCGGGGCACCGCGGTGGCGGCGGCGG
CGGCGGCGGCAACGCCGCCACCGCTCGTAAGCAGAGGCTGAAACCGTGGT
CCACCAGCGGGCCGTGCGTGGTGTCCTGCTCTCCGCCCTCCTCCTCCTCC
TCGGCCGCTTCGGGCGCGAGACAACCGGAGGAAGCCCAGGGGGCGGAAGA
CCGGATCGGGGGAGGGGGGGTGGCCGTGACACCGATAGACGGTGCCCCCG
TGGGCGGCGGCGGCGGAGGCGGCGGCGGCCTGGAGCGCTGCGAGCGAGCC
GCTCGCGCGTGCAACCTCTACCAGGAATGCACGCACGTGCTGCTCCCTCC
TGGGGGCGGCGGCGGAGACGGTCATTCGAGCGGCAGCGGCAACCGTAGCG
GGAAGAGAAGAAACGACGGCGGGTTCGCGGTCCTCATGCACCGGGCGGCG
AGGGACGGGTCGATGGCAGGCGTCGAGGCGGCGGCGGCACACGCAGCGGG
GGGTGGGAATGGCTGGGGCGGTCCCAAAGGCGGGTTCACGCTGGACGCGA
AGCCAAGGACGTACTACGTTGTGTCGTTCGGGGGTAGCGGGAGCAAGATG
CTCGGGGGTTGGCTGAGCGAGCGAGGCAAGGGGACGGTCAAGGAGGTGAG
ACGGCGATTCAGGAGACTTGTGTGA
back to top