prot_Ecto-sp13_S_contig16160.4490.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16160.4490.1
Unique Nameprot_Ecto-sp13_S_contig16160.4490.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length475
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16160.4490.1 vs. uniprot
Match: D8LSQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ3_ECTSI)

HSP 1 Score: 541 bits (1394), Expect = 7.070e-185
Identity = 357/469 (76.12%), Postives = 367/469 (78.25%), Query Frame = 0 
Query:    4 MQQRRSLPPSSSTGRRGRQPQTPRSRPLCSWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGALHTSDDDNGLPEYSLRAPAPRGKVSERTGGNAVGAGQDAYVASVGRPGGNVDASGTRRPGTVGGAVGGXXXDRSGGDAGEETVVGSGGWKWTNKTAGPVRPXXXXXXXXXXXXXXXSLLSNPLGRDAPLQVAVMRPANAAGGGSSGTGMNSWRWPSDAGAGSGGSIGDVSEADSVVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXARKQRLKPWSTSGPCVVSCSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTPIDGAPVGXXXXXXXXLERCERAARACNLYQECTHVLLPXXXXXXXXXXXXXXXXXXXXXXXXXFAVLMHRAARDGSMAGVEAAXXXXXXXX------NGWGGPKGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGTVKEV 466
            MQQRRSLPPSSSTGRRGRQPQTPRS PLC+WEVLGVATLLVLTIVNVCTYSERRAKFQLAHGG LHTSDDDNGLPE+SLR PAP+GKVSERTGG+  GAG D YVASVGRPGGNVDASGT+RP  VGG    XXX        EET+VGSGGWKWTNKT GPVRP  XXXXXXXXXXXXX     PLGRDAPLQVAV+RPAN AGGGSSGTGMNSWRWPSD GAGSGGSIG VSEA+S VGHFPCSLTEADDAPGPGHRGXXXXXXXXXXX   QRLKPWSTSGPCVVSCSPXXXXXXXX                 XXXX           XXXXXXX LERCERAARACNLYQECTHV+LP                         FAVLMHRAARDGSM GVEAA XXXXX        NGW GP+GGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKG VKEV
Sbjct:    1 MQQRRSLPPSSSTGRRGRQPQTPRSHPLCTWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGVLHTSDDDNGLPEHSLRPPAPQGKVSERTGGSEGGAGPDIYVASVGRPGGNVDASGTKRPDAVGGXXX-XXXXXXXXXXXEETMVGSGGWKWTNKTTGPVRPLSXXXXXXXXXXXXXP---TPLGRDAPLQVAVLRPANEAGGGSSGTGMNSWRWPSDVGAGSGGSIGGVSEAESAVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXX--QRLKPWSTSGPCVVSCSPXXXXXXXXSGARQLVEARGPEDRIGXXXXXXX--XXXXXXXXXXXXXGLERCERAARACNLYQECTHVMLPLGGGGGDGHSSGSGNRSGDKRNGGGFAVLMHRAARDGSMDGVEAAAXXXXXVSHAAGAGNGWSGPRGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEV 461
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16160.4490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSQ3_ECTSI7.070e-18576.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..474
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..30
NoneNo IPR availableTMHMMTMhelixcoord: 31..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16160contigEcto-sp13_S_contig16160:852..3328 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16160.4490.1mRNA_Ecto-sp13_S_contig16160.4490.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16160 852..3354 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16160.4490.1 ID=prot_Ecto-sp13_S_contig16160.4490.1|Name=mRNA_Ecto-sp13_S_contig16160.4490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=475bp
MSVMQQRRSLPPSSSTGRRGRQPQTPRSRPLCSWEVLGVATLLVLTIVNV
CTYSERRAKFQLAHGGALHTSDDDNGLPEYSLRAPAPRGKVSERTGGNAV
GAGQDAYVASVGRPGGNVDASGTRRPGTVGGAVGGGGGDRSGGDAGEETV
VGSGGWKWTNKTAGPVRPLSPPTPPTPPTPPTPSLLSNPLGRDAPLQVAV
MRPANAAGGGSSGTGMNSWRWPSDAGAGSGGSIGDVSEADSVVGHFPCSL
TEADDAPGPGHRGGGGGGGGNAATARKQRLKPWSTSGPCVVSCSPPSSSS
SAASGARQPEEAQGAEDRIGGGGVAVTPIDGAPVGGGGGGGGGLERCERA
ARACNLYQECTHVLLPPGGGGGDGHSSGSGNRSGKRRNDGGFAVLMHRAA
RDGSMAGVEAAAAHAAGGGNGWGGPKGGFTLDAKPRTYYVVSFGGSGSKM
LGGWLSERGKGTVKEVRRRFRRLV*
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