prot_Ecto-sp13_S_contig16158.4487.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig16158.4487.1
Unique Name	prot_Ecto-sp13_S_contig16158.4487.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	82

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.310e-46
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            GPLIQREL EGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGGRG
Sbjct:  147 GPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGRG 228

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2A2F6_TRICV (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2F6_TRICV)

HSP 1 Score: 125 bits (314), Expect = 1.140e-35
Identity = 57/82 (69.51%), Postives = 72/82 (87.80%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            G L++R+L EGETLRVSSG +VAF+  V++DVQT+PGFKNV+FGGEGLF+T LTGPGTV+LQG+P DRM+ +IARR+P G G
Sbjct:    9 GTLVRRDLEEGETLRVSSGCLVAFTKDVEFDVQTMPGFKNVLFGGEGLFVTTLTGPGTVWLQGMPPDRMISEIARRVPSGGG 90

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7R9VWB5_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VWB5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.040e-34
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            G LI++EL EGE LR+SSGS+VAF+T V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P  RMV +IARR+P G G
Sbjct:   18 GTLIRKELSEGEQLRISSGSLVAFTTGVDFDIQTMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMVSEIARRVPSGGG 99

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S1D4J1_CYCTE (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4J1_CYCTE)

HSP 1 Score: 120 bits (302), Expect = 6.640e-34
Identity = 54/80 (67.50%), Postives = 69/80 (86.25%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 80
            G L++R+L EGETLRVSSG++VA +  V YDVQ +PGFKNV+FGGEGLF+T L GPGT++LQG+P DRM+ +IARR+PGG
Sbjct:   25 GTLVRRDLEEGETLRVSSGTLVAMTADVDYDVQMMPGFKNVMFGGEGLFVTTLKGPGTIWLQGMPPDRMISEIARRVPGG 104

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.160e-33
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            G L+ ++L EGETLRV++GS+VAF  S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP G G
Sbjct:  218 GALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRGGG 299

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S0FRH4_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FRH4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.350e-32
Identity = 52/80 (65.00%), Postives = 69/80 (86.25%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 80
            G L++++L+EGE LRV+SG++VAFS  V +D+QT+PGFKNV+FGGEGLF+T L GPGTVFLQG P +RM+ +IARR+P G
Sbjct:   26 GTLVRKDLQEGEELRVASGALVAFSQGVDFDIQTMPGFKNVLFGGEGLFVTTLAGPGTVFLQGQPPERMISEIARRVPSG 105

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A6U3TE36_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TE36_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.700e-31
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            G LI+++L++GETLRVSSGS+VAF+ SV +DV T+PGFKNV+FGGEGLFIT LTGPGTV+LQG+P DRM+ +I RRIP G G
Sbjct:  224 GTLIRKDLQQGETLRVSSGSLVAFTQSVDFDVTTMPGFKNVLFGGEGLFITTLTGPGTVWLQGMPPDRMISEIVRRIPSGGG 305

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.010e-31
Identity = 53/82 (64.63%), Postives = 70/82 (85.37%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            G +I++EL  GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P  RM+ +IARR+P G G
Sbjct:  200 GSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGGG 281

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S4JUF7_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUF7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.090e-30
Identity = 53/80 (66.25%), Postives = 69/80 (86.25%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 80
            G L++R+L+EGETLR S G +VAF+  V++DVQT+PGFKNV+FGGEGLF+  LTGPGTV+LQG+P DRM+ +IARR+P G
Sbjct:  250 GTLVRRDLKEGETLRASGGCLVAFTKEVEFDVQTMPGFKNVMFGGEGLFVATLTGPGTVWLQGMPPDRMIGEIARRVPSG 329

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2FBI8_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBI8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.620e-30
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 0

Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 82
            G LI +EL+ GE LRV+SGS+VAF  SV+YDVQ + G KNVVFGGEGLFIT LTGPG V+LQG+ FDRMV +IARRIP G G
Sbjct:  217 GALISKELKAGEKLRVTSGSIVAFEGSVEYDVQMMTGMKNVVFGGEGLFITTLTGPGRVYLQGMQFDRMVSEIARRIPSGGG 298

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1U0_ECTSI	3.310e-46	97.56	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S2A2F6_TRICV	1.140e-35	69.51	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7R9VWB5_9STRA	3.040e-34	69.51	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S1D4J1_CYCTE	6.640e-34	67.50	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S2GIV3_9STRA	9.160e-33	71.95	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S0FRH4_9STRA	4.350e-32	65.00	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A6U3TE36_9STRA	1.700e-31	70.73	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S2WLF3_9STRA	4.010e-31	64.63	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S4JUF7_9STRA	1.090e-30	66.25	Altered inheritance of mitochondria protein 24, mi...	[more]
A0A7S2FBI8_9STRA	1.620e-30	70.73	Altered inheritance of mitochondria protein 24, mi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036983	Mitochondrial biogenesis AIM24 superfamily	GENE3D	3.60.160.10		coord: 1..81 e-value: 2.1E-27 score: 97.7
IPR002838	Mitochondrial biogenesis protein AIM24	PFAM	PF01987	AIM24	coord: 1..63 e-value: 4.4E-18 score: 65.8
None	No IPR available	PANTHER	PTHR43657	FAMILY NOT NAMED	coord: 1..80
IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	SUPERFAMILY	51219	TRAP-like	coord: 1..79

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16158	contig	Ecto-sp13_S_contig16158:2306..3469 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16158.4487.1	mRNA_Ecto-sp13_S_contig16158.4487.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig16158 2306..3469 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig16158.4487.1 ID=prot_Ecto-sp13_S_contig16158.4487.1|Name=mRNA_Ecto-sp13_S_contig16158.4487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFI
TKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036983	AIM24_sf
IPR002838	AIM24
IPR016031	Trp_RNA-bd_attenuator-like_dom