mRNA_Ecto-sp13_S_contig16158.4487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16158.4487.1
Unique NamemRNA_Ecto-sp13_S_contig16158.4487.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.310e-46
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            GPLIQREL EGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGGRG
Sbjct:  147 GPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGRG 228
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2A2F6_TRICV (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2F6_TRICV)

HSP 1 Score: 125 bits (314), Expect = 1.140e-35
Identity = 57/82 (69.51%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            G L++R+L EGETLRVSSG +VAF+  V++DVQT+PGFKNV+FGGEGLF+T LTGPGTV+LQG+P DRM+ +IARR+P G G
Sbjct:    9 GTLVRRDLEEGETLRVSSGCLVAFTKDVEFDVQTMPGFKNVLFGGEGLFVTTLTGPGTVWLQGMPPDRMISEIARRVPSGGG 90
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7R9VWB5_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VWB5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.040e-34
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            G LI++EL EGE LR+SSGS+VAF+T V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P  RMV +IARR+P G G
Sbjct:   18 GTLIRKELSEGEQLRISSGSLVAFTTGVDFDIQTMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMVSEIARRVPSGGG 99
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S1D4J1_CYCTE (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4J1_CYCTE)

HSP 1 Score: 120 bits (302), Expect = 6.640e-34
Identity = 54/80 (67.50%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 240
            G L++R+L EGETLRVSSG++VA +  V YDVQ +PGFKNV+FGGEGLF+T L GPGT++LQG+P DRM+ +IARR+PGG
Sbjct:   25 GTLVRRDLEEGETLRVSSGTLVAMTADVDYDVQMMPGFKNVMFGGEGLFVTTLKGPGTIWLQGMPPDRMISEIARRVPGG 104
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.160e-33
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            G L+ ++L EGETLRV++GS+VAF  S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP G G
Sbjct:  218 GALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRGGG 299
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S0FRH4_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FRH4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.350e-32
Identity = 52/80 (65.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 240
            G L++++L+EGE LRV+SG++VAFS  V +D+QT+PGFKNV+FGGEGLF+T L GPGTVFLQG P +RM+ +IARR+P G
Sbjct:   26 GTLVRKDLQEGEELRVASGALVAFSQGVDFDIQTMPGFKNVLFGGEGLFVTTLAGPGTVFLQGQPPERMISEIARRVPSG 105
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A6U3TE36_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TE36_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.700e-31
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            G LI+++L++GETLRVSSGS+VAF+ SV +DV T+PGFKNV+FGGEGLFIT LTGPGTV+LQG+P DRM+ +I RRIP G G
Sbjct:  224 GTLIRKDLQQGETLRVSSGSLVAFTQSVDFDVTTMPGFKNVLFGGEGLFITTLTGPGTVWLQGMPPDRMISEIVRRIPSGGG 305
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.010e-31
Identity = 53/82 (64.63%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            G +I++EL  GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P  RM+ +IARR+P G G
Sbjct:  200 GSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGGG 281
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S4JUF7_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUF7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.090e-30
Identity = 53/80 (66.25%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 240
            G L++R+L+EGETLR S G +VAF+  V++DVQT+PGFKNV+FGGEGLF+  LTGPGTV+LQG+P DRM+ +IARR+P G
Sbjct:  250 GTLVRRDLKEGETLRASGGCLVAFTKEVEFDVQTMPGFKNVMFGGEGLFVATLTGPGTVWLQGMPPDRMIGEIARRVPSG 329
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BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Match: A0A7S2FBI8_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBI8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.620e-30
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG 246
            G LI +EL+ GE LRV+SGS+VAF  SV+YDVQ + G KNVVFGGEGLFIT LTGPG V+LQG+ FDRMV +IARRIP G G
Sbjct:  217 GALISKELKAGEKLRVTSGSIVAFEGSVEYDVQMMTGMKNVVFGGEGLFITTLTGPGRVYLQGMQFDRMVSEIARRIPSGGG 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16158.4487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U0_ECTSI3.310e-4697.56Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2A2F6_TRICV1.140e-3569.51Altered inheritance of mitochondria protein 24, mi... [more]
A0A7R9VWB5_9STRA3.040e-3469.51Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S1D4J1_CYCTE6.640e-3467.50Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2GIV3_9STRA9.160e-3371.95Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S0FRH4_9STRA4.350e-3265.00Altered inheritance of mitochondria protein 24, mi... [more]
A0A6U3TE36_9STRA1.700e-3170.73Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2WLF3_9STRA4.010e-3164.63Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4JUF7_9STRA1.090e-3066.25Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2FBI8_9STRA1.620e-3070.73Altered inheritance of mitochondria protein 24, mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16158contigEcto-sp13_S_contig16158:2306..3469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score162.2
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D7G1U0
Model size246
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Mitochondrial biogenesis AIM24
EggNOG OGs2QVFQ@2759,COG2013@1
Cds size246
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.4799783-CDS-Ecto-sp13_S_contig16158:2305..23871681462852.4799783-CDS-Ecto-sp13_S_contig16158:2305..2387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16158 2306..2387 -
1681462852.4903848-CDS-Ecto-sp13_S_contig16158:3305..34691681462852.4903848-CDS-Ecto-sp13_S_contig16158:3305..3469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16158 3306..3469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16158.4487.1prot_Ecto-sp13_S_contig16158.4487.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16158 2306..3469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16158.4487.1

>prot_Ecto-sp13_S_contig16158.4487.1 ID=prot_Ecto-sp13_S_contig16158.4487.1|Name=mRNA_Ecto-sp13_S_contig16158.4487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
GPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFI
TKLTGPGTVFLQGLPFDRMVDQIARRIPGGRG
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mRNA from alignment at Ecto-sp13_S_contig16158:2306..3469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16158.4487.1 ID=mRNA_Ecto-sp13_S_contig16158.4487.1|Name=mRNA_Ecto-sp13_S_contig16158.4487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16158:2306..3469- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCGCTGATCCAGCGCGAGCTTCGCGAAGGGGAGACCCTGAGAGTGAG
CTCGGGCAGCGTCGTCGCATTCTCGACGTCGGTGCAGTACGACGTGCAGA
CCATTCCCGGCTTCAAGAACGTGGTCTTCGGGGGGGAGGGGCTGTTCATC
ACCAAGCTGACGGGGTAAGCAAGCAAACAGCACGGCAGGGACGAGGAGAT
ATGAATGCTGCACACCTACTGCTGTTGTACAGGCGGAAGCCTTTTTTCTC
CTTCTTTTTGCGGCAATGGGCGCCGACGAATGTGCGACGTGCTACTGCTG
CGGCGGGCAGAAGCGGCCCCGTCCCCCGGTCGTTGCTGTTTGCACGTCCT
GATTCTTTTTACGTGCGTGCCCCGGCGTATATCAACAGAGGAAAAATGAG
ACTCAATCTCACCGTTGGGTGCTATCGGGCGGGCTTTCTGGCAAGACTAA
AAGTAGGAGCCTACTTCATTCTGACCGATATTCGGGCGAGGTTCGTTGTC
CTCGTGCAGAACACATGCATGACATCCTTCACGAGTGTCGCCTTCTCCGG
CGGGGCTGTTCGCCGAGCTTTTGGCAGCAGACCCCACGGGCAGGAGCAGT
CCTGGCGTGGTGTTGTAGCTATTTTCTATGCCGGTCAGAACCACACGTGT
GTTTCAGGTCCTGGGTTGTTATGCACGGCGGGCAAAGTAGGCTTCCAAGC
CCGCCCGTCGACAACGCTTTTTTCTTCCATTGCTGGGAGCCTCTTTTCTT
TCATCGCTGGGAGCTCTGCGAATTTGTGGTGATGGTGAGATCGAGCTGTA
CAAGGGCATTTGCTTGATTGAAATGTCTTTCGTTGGGCTTCGGGGTGACC
GAAGTAGATTCGAACCCCTTGTTCTCGCCGCGCCCGCCTGCGGTGGCGGA
TAGAAATCCCCAGGCTTGATTTCCCCATCATCCCACAATACTATGCGCCA
TGCAGTAGAAACGTTTTTATTTTCTTGTTGCTCGAGCGTTATCCGAGCCA
AGTGCTGTGATTACCCCCCCTTAGCCACAACTGCTTCTGATCCAATCATG
CCGCTGCGCCCCCTCCGCCTGCGGTGTTGAAGGCCTGGCACCGTGTTTCT
TCAGGGTCTGCCTTTCGACCGAATGGTGGACCAAATAGCACGACGGATTC
CTGGCGGTCGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16158:2306..3469-

>mRNA_Ecto-sp13_S_contig16158.4487.1 ID=mRNA_Ecto-sp13_S_contig16158.4487.1|Name=mRNA_Ecto-sp13_S_contig16158.4487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16158:2306..3469- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCGCTGATCCAGCGCGAGCTTCGCGAAGGGGAGACCCTGAGAGTGAG
CTCGGGCAGCGTCGTCGCATTCTCGACGTCGGTGCAGTACGACGTGCAGA
CCATTCCCGGCTTCAAGAACGTGGTCTTCGGGGGGGAGGGGCTGTTCATC
ACCAAGCTGACGGGGCCTGGCACCGTGTTTCTTCAGGGTCTGCCTTTCGA
CCGAATGGTGGACCAAATAGCACGACGGATTCCTGGCGGTCGCGGA
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