mRNA_Ecto-sp13_S_contig16148.4479.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16148.4479.1
Unique NamemRNA_Ecto-sp13_S_contig16148.4479.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16148.4479.1 vs. uniprot
Match: A0A6H5L2G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G4_9PHAE)

HSP 1 Score: 556 bits (1433), Expect = 2.520e-189
Identity = 332/376 (88.30%), Postives = 338/376 (89.89%), Query Frame = 1 
Query:    1 GHNTGTNTSN-NRGSTRCLEAIAVVLNQSSPKGGIREPPFISSTLQLQLACLELCAVCRSLPSLHIKVPETLPASLWVAATSSDDAGDHDNGVQWQDLLSTLRSLRRWYPRGDSRRRDGVTLNRVPPLLPFSVTCGLSSLPRSSSSRTADLWTGVERLRLEFSLSETSSWKDSSVVMLPRRLKQLLFVSSSFVPNFQLPVAVLSSPPPLLLKLFVNGSFEVPVVDVPWPPSLTQLSFGARFQQRLGRGGA---GSXXXXXXXGGVIKXXXXXXXXXXWHHFQEPIAEINWPASLERLAFFGPGFNEPLDGVVSSWPSLRKLVLXXXXXXXXXXXXXXXXLRALRFGDXXXXXXXXXXXXXXXQELSLXGGXDGTVE 1116
            GHNTG  + N NRGSTRC+EAIAVVLNQSSP+GGIREPPFISSTLQLQLACLELC VCRSLPSLH+KVPETLPA L VA TS DDAGDHDNGVQWQDL STLRSLRRWYP GDSR+ DGVTLNRVPPLLPFSVTCGLSSLPRSSSSRTADLWTGVERLRLEFSLSETSSWKDSSVVMLPRRLKQLLFVSSSFVPNFQLPVAVLSSPPPLLLKLFVNGSFEVPV DVPWPPSLTQLSFGARFQQRLGRGGA   G        GGVIKXXXXXXXXXXWHHFQEP+AEINWPASLERLAFFGPGFNEPL GVVSSWPSLRK   XXXXXXXXXXXXXX  LRAL FG XXXXXXXXXXXXXXX   S XGGXD  VE
Sbjct:   23 GHNTGNISDNDNRGSTRCMEAIAVVLNQSSPRGGIREPPFISSTLQLQLACLELCGVCRSLPSLHVKVPETLPACLSVAPTSDDDAGDHDNGVQWQDLFSTLRSLRRWYPGGDSRQGDGVTLNRVPPLLPFSVTCGLSSLPRSSSSRTADLWTGVERLRLEFSLSETSSWKDSSVVMLPRRLKQLLFVSSSFVPNFQLPVAVLSSPPPLLLKLFVNGSFEVPVADVPWPPSLTQLSFGARFQQRLGRGGACSAGDGDSDGGGGGVIKXXXXXXXXXXWHHFQEPVAEINWPASLERLAFFGPGFNEPLAGVVSSWPSLRKXXXXXXXXXXXXXXXXXASLRALEFGXXXXXXXXXXXXXXXXXXXSXXGGXDDIVE 398
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BLAST of mRNA_Ecto-sp13_S_contig16148.4479.1 vs. uniprot
Match: A0A6H5K4H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H2_9PHAE)

HSP 1 Score: 456 bits (1174), Expect = 5.690e-151
Identity = 250/326 (76.69%), Postives = 271/326 (83.13%), Query Frame = 1 
Query:    1 GHNTGTNTSNN----RGSTRCLEAIAVVLNQSSPKGGIREPPFISSTLQLQLACLELCAVCRSLPSLHIKVPETLPASLWVAATSSDDAGDHDNGVQWQDLLSTLRSLRRWYPRGDSRRRDGVTLNRVPPLLPFSVTCGLSSLPRSSSSRTADLWTGVERLRLEFSLSETSSWKDSSVVMLPRRLKQLLFVSSSF------VPNFQLPVAVLSSPPPLLLKLFVNGSFEVPVVDVPWPPSLTQLSFGARFQQRLGRGGAGSXXXXXXXGGVIKXXXXXXXXXXWHHFQEPIAEINWPASLERLAFFGPGFNEPLDGVVSSWPSLRK 948
            GHNTGT+TSNN    RGS RCLEAI VVLNQSSPKGGIREPPFISSTLQLQLACLELC VCRSLPSLHI V ETLP+SLWVA TSSDDAGDHD+GV        L SLRR YPRG  R +DGVT NRVPPLLPFSVTCG +SLP SSSSRTAD W GVERLRLEFS+SE  +WK+S +V+LP RLK LL +SS F      + N++LPVAVLSSPPPLLLKLFVNGSFEVPV DVPWPPSL Q+SFG+RFQQRLGRGGAGS        GVIKXXXXXXXXXX H F+EPIAE++WP+SLERLAFFGPGFNEPL GVV+SWPSLRK
Sbjct:   23 GHNTGTDTSNNDNDDRGSARCLEAITVVLNQSSPKGGIREPPFISSTLQLQLACLELCRVCRSLPSLHITVRETLPSSLWVAPTSSDDAGDHDDGV-------LLPSLRRCYPRGGMRGKDGVTPNRVPPLLPFSVTCGYASLPLSSSSRTADRWAGVERLRLEFSVSEIENWKESPLVVLPGRLKHLLLISSYFDFVQNRIGNYRLPVAVLSSPPPLLLKLFVNGSFEVPVADVPWPPSLIQISFGSRFQQRLGRGGAGSAVD-----GVIKXXXXXXXXXXRHQFEEPIAEVSWPSSLERLAFFGPGFNEPLAGVVASWPSLRK 336
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BLAST of mRNA_Ecto-sp13_S_contig16148.4479.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.270e-5
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   37 GSTRCLEAIAVVLNQSSPKGGIREPPFISSTLQLQLACLELCAVCRSLPSLHIKVPETLPASLW 228
            G +RCL+A+ + LNQ+S  GG     + +ST+QLQLA LELCA CRS+  L + V    P  LW
Sbjct:    8 GPSRCLDALIIALNQAS--GG----EWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLW 65
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BLAST of mRNA_Ecto-sp13_S_contig16148.4479.1 vs. uniprot
Match: A0A6H5JR57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR57_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 8.620e-5
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:   34 RGSTRCLEAIAVVLNQS--SPKGGIREPPFISSTLQLQLACLELCAVCRSLPSLHIKVPETLPASLWV----AATSSDDAGD----HDNGVQWQ 285
            RG +R L+A+ V LNQ+  S  G      + +STL LQLA ++LC  CRS+P+L +K+    P SLW     A   S  +G       +GV+W+
Sbjct:   12 RGYSRFLDALTVALNQAYDSRAGDGDNIRWFTSTLNLQLASVDLCRACRSVPTLLVKIDHDTPRSLWTPTVYAGAYSAPSGRVPPLRAHGVRWE 105
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BLAST of mRNA_Ecto-sp13_S_contig16148.4479.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.820e-5
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   13 GTNTSNNRGSTRCLEAIAVVLNQSSPKGGIREPPFISSTLQLQLACLELCAVCRSLPSLHIKVPETLPASLW 228
            G +T+   G +RCL+A+ + LNQ+S  GG     + +ST+QLQL  LELCA CRS+  L + V    P  LW
Sbjct:   31 GRHTNVETGPSRCLDALIIALNQAS--GG----EWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLW 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16148.4479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L2G4_9PHAE2.520e-18988.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H2_9PHAE5.690e-15176.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT95_ECTSI3.270e-548.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR57_9PHAE8.620e-538.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA08_9PHAE8.820e-544.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16148contigEcto-sp13_S_contig16148:1031..2878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1806
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_003860.1
Cds size1806
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462851.8860734-CDS-Ecto-sp13_S_contig16148:1030..26111681462851.8860734-CDS-Ecto-sp13_S_contig16148:1030..2611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16148 1031..2611 +
1681462851.8971367-CDS-Ecto-sp13_S_contig16148:2653..28781681462851.8971367-CDS-Ecto-sp13_S_contig16148:2653..2878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16148 2654..2878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16148.4479.1prot_Ecto-sp13_S_contig16148.4479.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16148 1031..2878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16148.4479.1

>prot_Ecto-sp13_S_contig16148.4479.1 ID=prot_Ecto-sp13_S_contig16148.4479.1|Name=mRNA_Ecto-sp13_S_contig16148.4479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=602bp
GHNTGTNTSNNRGSTRCLEAIAVVLNQSSPKGGIREPPFISSTLQLQLAC
LELCAVCRSLPSLHIKVPETLPASLWVAATSSDDAGDHDNGVQWQDLLST
LRSLRRWYPRGDSRRRDGVTLNRVPPLLPFSVTCGLSSLPRSSSSRTADL
WTGVERLRLEFSLSETSSWKDSSVVMLPRRLKQLLFVSSSFVPNFQLPVA
VLSSPPPLLLKLFVNGSFEVPVVDVPWPPSLTQLSFGARFQQRLGRGGAG
SAGDGDGDGGVIKWPVHLQQLSFWHHFQEPIAEINWPASLERLAFFGPGF
NEPLDGVVSSWPSLRKLVLGNTFNQPIAQVSWPASLRALRFGDTFNQPIA
QASWPASLQELSLGGGFDGTVEEVIWPSSLRKLDLGKRFSHPIARATWPA
SLEELAFGGCEGRFNQPIAQVAWPPSLRAVRFGEWFNQSIDRVSWPNGLQ
ELYFGGKFNQLIAQASWPASLRELAFGTDFNQPIDQVSWPASLQKLSFGK
YFNHPIAHVSWPGALRELIFGERFDQRFGEYFNQPIAQASWPDALQEIKF
GGDFSQRMIGTNWPMSLRKIYISKRSASGNRGSGRVSALCGNRELSLFCY
V*
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mRNA from alignment at Ecto-sp13_S_contig16148:1031..2878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16148.4479.1 ID=mRNA_Ecto-sp13_S_contig16148.4479.1|Name=mRNA_Ecto-sp13_S_contig16148.4479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16148:1031..2878+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCACAACACTGGTACCAATACCAGCAACAACAGAGGCAGCACGCGGTG
CTTGGAAGCCATCGCAGTTGTGCTTAATCAATCGTCGCCGAAGGGAGGGA
TAAGAGAACCCCCGTTCATCTCATCCACGCTGCAGCTGCAATTAGCGTGC
TTGGAGCTATGCGCGGTTTGTCGAAGCCTGCCATCCTTGCACATAAAGGT
GCCGGAAACACTGCCCGCAAGCTTGTGGGTTGCTGCGACTTCCTCCGACG
ACGCCGGCGATCACGACAACGGCGTTCAGTGGCAGGATCTGCTTTCCACT
CTCCGCTCCTTGCGCCGATGGTATCCCCGCGGGGACTCACGAAGGCGGGA
CGGCGTGACCCTGAACCGCGTCCCGCCTCTTCTCCCATTCAGCGTAACAT
GTGGGCTTTCGAGCTTGCCTCGCTCTAGTAGTAGTCGCACGGCCGACCTG
TGGACTGGCGTGGAGCGACTGCGGCTGGAATTTTCTCTCTCAGAGACGAG
CAGTTGGAAGGACTCGTCTGTGGTGATGCTGCCGAGGAGACTCAAGCAGC
TTCTCTTTGTCTCGAGCTCCTTCGTTCCTAATTTTCAACTTCCGGTGGCG
GTGTTGTCGTCACCTCCGCCGCTCCTTCTCAAGCTATTTGTCAACGGGAG
TTTCGAGGTGCCGGTTGTAGACGTTCCGTGGCCCCCTTCTCTTACCCAGC
TTTCATTCGGAGCTAGGTTTCAACAACGCTTGGGGAGAGGGGGGGCTGGC
AGTGCTGGTGATGGTGATGGTGATGGTGGTGTGATCAAATGGCCAGTGCA
CCTCCAGCAGCTGTCGTTCTGGCATCACTTCCAAGAGCCCATTGCCGAAA
TCAATTGGCCGGCCTCGCTCGAGCGCCTGGCGTTTTTTGGACCTGGCTTC
AACGAGCCTCTTGACGGCGTGGTGTCTTCCTGGCCATCGCTGCGGAAACT
CGTCCTCGGGAACACATTCAACCAACCAATCGCCCAAGTTTCGTGGCCAG
CCTCCCTCCGGGCACTCAGGTTCGGGGACACATTCAACCAACCCATCGCC
CAAGCATCGTGGCCAGCCTCCTTGCAGGAGCTCTCCCTGGGCGGAGGATT
CGACGGTACCGTAGAGGAAGTCATTTGGCCTTCTTCGCTACGAAAGCTGG
ATCTGGGCAAAAGGTTCAGCCATCCCATCGCCCGAGCTACGTGGCCAGCC
TCCCTGGAAGAGCTGGCGTTTGGAGGTTGTGAAGGCAGGTTCAACCAACC
CATCGCCCAAGTTGCGTGGCCACCCTCCCTCCGCGCAGTCAGATTCGGGG
AATGGTTCAACCAATCCATTGACCGAGTCTCTTGGCCCAATGGGTTGCAA
GAGCTCTACTTCGGGGGTAAGTTCAACCAACTCATCGCCCAAGCATCATG
GCCGGCTTCCCTTCGAGAGCTCGCATTCGGGACAGATTTCAATCAACCCA
TTGATCAAGTGTCATGGCCAGCCTCCCTCCAGAAGCTTTCCTTTGGAAAG
TACTTCAATCATCCCATCGCCCATGTTTCGTGGCCGGGTGCCTTGCGAGA
GCTGATATTCGGGGAGAGGTTCGACCAGCGCGTCGCCCTTGTTAGGTGGC
CGGTCTCCCTCCGATCACTCAAGTTCGGGGAATACTTCAACCAACCCATC
GCCCAAGCTTCGTGGCCCGATGCGTTGCAGGAAATAAAGTTCGGTGGGGA
CTTCTCCCAACGGATGATCGGCACCAACTGGCCGATGAGCCTTCGCAAAA
TATACATCAGTAAGCGTTCTGCTTCGGGGAATCGCGGATCAGGACGTGTG
TCCGCCCTCTGTGGAAATCGTGAGCTATCGCTCTTCTGTTATGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16148:1031..2878+

>mRNA_Ecto-sp13_S_contig16148.4479.1 ID=mRNA_Ecto-sp13_S_contig16148.4479.1|Name=mRNA_Ecto-sp13_S_contig16148.4479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16148:1031..2878+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCACAACACTGGTACCAATACCAGCAACAACAGAGGCAGCACGCGGTG
CTTGGAAGCCATCGCAGTTGTGCTTAATCAATCGTCGCCGAAGGGAGGGA
TAAGAGAACCCCCGTTCATCTCATCCACGCTGCAGCTGCAATTAGCGTGC
TTGGAGCTATGCGCGGTTTGTCGAAGCCTGCCATCCTTGCACATAAAGGT
GCCGGAAACACTGCCCGCAAGCTTGTGGGTTGCTGCGACTTCCTCCGACG
ACGCCGGCGATCACGACAACGGCGTTCAGTGGCAGGATCTGCTTTCCACT
CTCCGCTCCTTGCGCCGATGGTATCCCCGCGGGGACTCACGAAGGCGGGA
CGGCGTGACCCTGAACCGCGTCCCGCCTCTTCTCCCATTCAGCGTAACAT
GTGGGCTTTCGAGCTTGCCTCGCTCTAGTAGTAGTCGCACGGCCGACCTG
TGGACTGGCGTGGAGCGACTGCGGCTGGAATTTTCTCTCTCAGAGACGAG
CAGTTGGAAGGACTCGTCTGTGGTGATGCTGCCGAGGAGACTCAAGCAGC
TTCTCTTTGTCTCGAGCTCCTTCGTTCCTAATTTTCAACTTCCGGTGGCG
GTGTTGTCGTCACCTCCGCCGCTCCTTCTCAAGCTATTTGTCAACGGGAG
TTTCGAGGTGCCGGTTGTAGACGTTCCGTGGCCCCCTTCTCTTACCCAGC
TTTCATTCGGAGCTAGGTTTCAACAACGCTTGGGGAGAGGGGGGGCTGGC
AGTGCTGGTGATGGTGATGGTGATGGTGGTGTGATCAAATGGCCAGTGCA
CCTCCAGCAGCTGTCGTTCTGGCATCACTTCCAAGAGCCCATTGCCGAAA
TCAATTGGCCGGCCTCGCTCGAGCGCCTGGCGTTTTTTGGACCTGGCTTC
AACGAGCCTCTTGACGGCGTGGTGTCTTCCTGGCCATCGCTGCGGAAACT
CGTCCTCGGGAACACATTCAACCAACCAATCGCCCAAGTTTCGTGGCCAG
CCTCCCTCCGGGCACTCAGGTTCGGGGACACATTCAACCAACCCATCGCC
CAAGCATCGTGGCCAGCCTCCTTGCAGGAGCTCTCCCTGGGCGGAGGATT
CGACGGTACCGTAGAGGAAGTCATTTGGCCTTCTTCGCTACGAAAGCTGG
ATCTGGGCAAAAGGTTCAGCCATCCCATCGCCCGAGCTACGTGGCCAGCC
TCCCTGGAAGAGCTGGCGTTTGGAGGTTGTGAAGGCAGGTTCAACCAACC
CATCGCCCAAGTTGCGTGGCCACCCTCCCTCCGCGCAGTCAGATTCGGGG
AATGGTTCAACCAATCCATTGACCGAGTCTCTTGGCCCAATGGGTTGCAA
GAGCTCTACTTCGGGGGTAAGTTCAACCAACTCATCGCCCAAGCATCATG
GCCGGCTTCCCTTCGAGAGCTCGCATTCGGGACAGATTTCAATCAACCCA
TTGATCAAGTGTCATGGCCAGCCTCCCTCCAGAAGCTTTCCTTTGGAAAG
TACTTCAATCATCCCATCGCCCATGTTTCGTGGCCGGGTGCCTTGCGAGA
GCTGATATTCGGGGAGAGGTTCGACCAGCGCTTCGGGGAATACTTCAACC
AACCCATCGCCCAAGCTTCGTGGCCCGATGCGTTGCAGGAAATAAAGTTC
GGTGGGGACTTCTCCCAACGGATGATCGGCACCAACTGGCCGATGAGCCT
TCGCAAAATATACATCAGTAAGCGTTCTGCTTCGGGGAATCGCGGATCAG
GACGTGTGTCCGCCCTCTGTGGAAATCGTGAGCTATCGCTCTTCTGTTAT
GTTTGA
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