mRNA_Ecto-sp13_S_contig16143.4477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16143.4477.1
Unique NamemRNA_Ecto-sp13_S_contig16143.4477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16143.4477.1 vs. uniprot
Match: D7G758_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G758_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 2.460e-92
Identity = 145/150 (96.67%), Postives = 148/150 (98.67%), Query Frame = 1 
Query:    1 LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAIVLHMEDYFRYSPAALEASMEAVWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGLSSDLLKLRTTRLSSEGRVLPPVHFGILVILA 450
            LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAI+LHMEDYFRYSP ALEA+MEA WRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRG+SSDLLKLRTTRLSSEGRVLPPVHFGILVILA
Sbjct:   64 LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAILLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILA 213
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BLAST of mRNA_Ecto-sp13_S_contig16143.4477.1 vs. uniprot
Match: A0A6H5JLZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ7_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 9.820e-91
Identity = 145/150 (96.67%), Postives = 148/150 (98.67%), Query Frame = 1 
Query:    1 LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAIVLHMEDYFRYSPAALEASMEAVWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGLSSDLLKLRTTRLSSEGRVLPPVHFGILVILA 450
            LLFGALFSYTISLLVNRQIKIEEIVNAEVSALL+IVLHMEDYFRYSP ALEA+MEA WRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRG+SSDLLKLRTTRLSSEGRVLPPVHFGILVILA
Sbjct:  186 LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLSIVLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILA 335
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BLAST of mRNA_Ecto-sp13_S_contig16143.4477.1 vs. uniprot
Match: A0A835YX84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX84_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.190e-47
Identity = 86/150 (57.33%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:    1 LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAIVLHMEDYFRYSPAALEASMEAVWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGLSSDLLKLRTTRLSSEGRVLPPVHFGILVILA 450
            LLFG LFSYTISLLVNRQ +IEE+VN E++A+  ++ H+ D+F   P   E +++AVWRHTD LIF SRYQEIL LVQ D +E+LMR+II VD++  A + H  K  ++R+ LGYLR L +++ +LR  R+S+EGRVLPPVHF IL  LA
Sbjct:  106 LLFGTLFSYTISLLVNRQNRIEELVNQELAAMTTLLWHLIDFFDGDPEKREQALKAVWRHTDQLIFNSRYQEILALVQGDSIEELMRMIIRVDEKDTAQNTH--KPNINRELLGYLRPLGAEINRLRAMRISAEGRVLPPVHFFILGSLA 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16143.4477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G758_ECTSI2.460e-9296.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLZ7_9PHAE9.820e-9196.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX84_9STRA6.190e-4757.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16143contigEcto-sp13_S_contig16143:778..3980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score277.7
Seed ortholog evalue3.2e-72
Seed eggNOG ortholog2880.D7G758
Model size456
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Protein of unknown function (DUF4239)
EggNOG OGs2E8UB@1,2SF9E@2759
Ec32 ortholog descriptionProtein of unknown function DUF4239
Ec32 orthologEc-01_010950.1
Cds size456
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462851.6933706-CDS-Ecto-sp13_S_contig16143:777..9001681462851.6933706-CDS-Ecto-sp13_S_contig16143:777..900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16143 778..900 -
1681462851.7087045-CDS-Ecto-sp13_S_contig16143:1657..17291681462851.7087045-CDS-Ecto-sp13_S_contig16143:1657..1729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16143 1658..1729 -
1681462851.7196832-CDS-Ecto-sp13_S_contig16143:2720..28501681462851.7196832-CDS-Ecto-sp13_S_contig16143:2720..2850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16143 2721..2850 -
1681462851.7285652-CDS-Ecto-sp13_S_contig16143:3299..33881681462851.7285652-CDS-Ecto-sp13_S_contig16143:3299..3388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16143 3300..3388 -
1681462851.738202-CDS-Ecto-sp13_S_contig16143:3938..39801681462851.738202-CDS-Ecto-sp13_S_contig16143:3938..3980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16143 3939..3980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16143.4477.1prot_Ecto-sp13_S_contig16143.4477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16143 778..3980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16143.4477.1

>prot_Ecto-sp13_S_contig16143.4477.1 ID=prot_Ecto-sp13_S_contig16143.4477.1|Name=mRNA_Ecto-sp13_S_contig16143.4477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
LLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAIVLHMEDYFRYSPAAL
EASMEAVWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASD
AHRNKSGVHRDSLGYLRGLSSDLLKLRTTRLSSEGRVLPPVHFGILVILA
R*
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mRNA from alignment at Ecto-sp13_S_contig16143:778..3980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16143.4477.1 ID=mRNA_Ecto-sp13_S_contig16143.4477.1|Name=mRNA_Ecto-sp13_S_contig16143.4477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16143:778..3980- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGTTCGGTGCGCTCTTCTCCTACACCATCTCCTTGCTGGTGAGAGT
CGTCACATCGGAGGTTGATGGGATCATGTTGTAGTCGGTATCGTCGTTGT
TTTGGAGATCGATGCAGCAGCACTGTGGACAACATTCACCAGCACCTCTC
CGTACTGGCGTGGCTGGTCGTTGAGGTGTTGCCGACAGCAGAATCAGTGT
TGGTGTGTTGCGACCAACGCGGTGGATTGGTGATGATATTTGGTAGTTTT
CTTTGCCACTGCGATGAGATCTGGCCACTTCAATGATTCAAAATGTGCCG
CCTCTTGTTTTGAGCCCTAAATCCGACCCCCATGTAAACGTTGCTTGGGG
ACGCTGTAGATGCATGTTTGTCTTGGAGTATGGGGAACACCAGGTATATG
CTACCAGTACGATATTCTACCAGTACGTGGAAGAGACTTGTGCTCCACTG
AACACGCGCCAAATCAAGCACAGAGCTTGTGGCTAGCACCTCAAAGACAC
CAGCGTCCCGACCATCAACAGGTGAAGTTCCACTGGTGTGTGTGTGTTGG
AATCTTAATCCCCCCCCCCTCGGGCGTGTTTGTGTTTGCAAGGTTAACCG
GCAGATCAAGATCGAGGAGATCGTGAACGCGGAAGTATCGGCCCTATTGG
CGATAGTGCTGCACATGGAAGACTACTTCAGGTGAGATAGGCCCCCATTA
ATGAAGAAAACAAGGCTCAAGAGGAGTTGTATGCGTATTTTGGTTTCTCT
CCAAAAAGCGGAGATACTAACGTCTTGGTGATGGTAGTACAGCACGAAAC
AAGAGAGGGGCGTAGCCGAGAGAAAGCGCACGGGATAAGAACGAGAGTGC
GAGAGAGGGTTACTGCGCAATACAACCTGGGTGAACGCATGCGTTGAAAT
GAGCACCATCCCGGTCCAGCCGGGGACCCGATCTGTAGCTTACCGAAACA
GCTGCCTCTGCTGCTCCTGCTGCTTGCTACAAATACGTGCGATTCGAGCA
CCGGATGGACCGACCAATCCGTTGATGTCTTCGCTGCCCTGTAAGACCAA
AGGGAGCCCCGCGGTTGGCTGCCACGCGGCATGTACCCCGCACTGAGACG
CCCGAATTCTCCTCTCTGGAAACCGGACAGGTATAGCCCGGCAGCTCTGG
AGGCGTCGATGGAGGCGGTATGGAGACACACGGACACTCTCATATTTCAG
AGCCGTTACCAGGAGATTTTGCTTCTTGTCCAAGACGACCCGCTAGAAGA
CCTCATGAGGGTGAGGGATGGGCGGCTATTTAGTAGGCGACATTTCGTTG
TGTAGCGCTGGGCTTGACCAGGCGGAAGGGGGTGAAGCTAGCGTTAACTG
ACAAAAGATTGCGCCCCGCTTCGGTGCAGGTGGTCGAGTTGCCGTCACTT
TTTGTTTCAAAAGTGAAAAGCTACGCAGGGTAGGGTCGACATCGAGGGGT
GTGACGATTGTCTTCCTGCACTTGCTGATCTCTCGAGACGAGGCATGGGG
GGGGAGGGTCTGGGGTCATGGAAGGAGGGAGGTCGGATGAACGATCGACA
TTGGCAGCGGAAATCCCCCGTCGAGAACACGCACCACGCCTTTTTTACAC
GCCTTCGTTTGTGTCCTCCACGCTGTTGTTGTTTGTGGTACCGTCTTGTC
GAGGTTTGTCTGCGAGTGTCAACAAGAGCGTTGACTCAGAAGCATGCTCA
AACAAGTGGCGGAAAGTAGGTTTTGATTCGGATTATGTTGTTTGCGCGTC
CCCTGCCTTTCCCACCCCTCCTCGTACATCTCTGGTGTTGGTGCGGAAAA
GACCCGGGTATTTGATGGCCCGCGAGAGAGGATCATCAAAAAGTTTGGCG
GGGTGCGAGTTGCACAGAAAAGAAAAGGCTGCCGTTTGATACAGCGTGAG
AGGCAGCAGACGGATGTATGGTTGTTTTTTAAGTTTTGTCTCACCGACGA
AACACCAGATTTACGATCGCGGTACAAGGTTCCCTATGCAAGTATTGGTA
CAAACATCACGAGCTGTGTTTCAACGTTGGTATTGCCTCTGTCAGGAGAA
TGGACATTTCTCGTCCTCCTCCTGCTCGGAGGGGGGCGACGCGTGATCAA
TGGTTGAATGGCAGTATTACAAGGCTTCGGTAAATGTGCCGCCAACCCCC
CGCCCCCGACCCCCGCGCCTCTCTCCGCATGCACCCTGCCGCTATTCCCA
CTCCGGCGGCGTGCGCTTGTCGTGTATGTTACAACATCTTGGGTCAATCA
GCTGATCATCGCCGTGGATGACGAAGTACTGGCTTCGGATGCCCACCGCA
ACAAGTCCGGGGTACATCGAGACGTGAGCAACGTACCTTGGCGCCTTGGA
AGTAGTAGCCGGGGAGTTGACCGAAGCTGTTTCTTCACGAGAGCTGTCGC
TCAGAACGCTAGCCAGGGAGTTCACCGAAGCTGCTTCTTCACGAGAGCTG
TAGCCCAGAACGTTGGGGCAGGGAAAGCCGCTCGCTTTGCAAGAGTAGGA
CTTTCCTCGCACGATCACTTGTATGCATCGGGCTAGAGAGAAACGAAGGT
TTTTCGCTGCTTAGTTCATGCAATACGTGGCCATCCACATTGCTGGTAAT
GATGGAAGCTATTTGTCGGACATCGCATGGTGCATGAAGGGTTGCTTCGT
TTTGCTGCCCTTCGCTCGAAAATGACGAGAACTTTTAACGGGAAAGGTAC
TGTTGTACACGGTGGTTAGGTCACCTCTTGGCCGCATCTGCCGTCGCCGG
ACGTGTTCTGCGAAGGTGCTTGGGGCTGGGGCGGGTGGTGTCATTGCAGC
CCGTTTCAAGCTTGTCAAAGCAACAAGGGGATATGAAAGTTACGAAAGCG
AGAAACAGGACCTAACGAGTGACAAAAAAGAAATTACGGTACGAGTCCAA
AATTTTGACATTTTTCTTAGTGGCTGATGTTATCGTCCGATTTGTCGAGT
CTTCCGACAATTGTCCCTCCCTCCCTCTCGCCTCATTTTTTCCGTATTAT
TTGTATGGTGTTGTGCCACCTGGTGCGCGCACGTACCACCACACCTTGCG
TGGCCCCCCTGATCTATCCCGAGCGGTCAGAGCTTGGGGTACCTGAGGGG
ATTGTCTTCGGACCTACTCAAGCTTAGAACGACGCGGCTGTCGAGCGAGG
GGAGAGTTCTTCCCCCGGTGCACTTCGGGATTCTCGTCATTCTCGCCAGG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16143:778..3980-

>mRNA_Ecto-sp13_S_contig16143.4477.1 ID=mRNA_Ecto-sp13_S_contig16143.4477.1|Name=mRNA_Ecto-sp13_S_contig16143.4477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16143:778..3980- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGTTCGGTGCGCTCTTCTCCTACACCATCTCCTTGCTGGTTAACCG
GCAGATCAAGATCGAGGAGATCGTGAACGCGGAAGTATCGGCCCTATTGG
CGATAGTGCTGCACATGGAAGACTACTTCAGGTATAGCCCGGCAGCTCTG
GAGGCGTCGATGGAGGCGGTATGGAGACACACGGACACTCTCATATTTCA
GAGCCGTTACCAGGAGATTTTGCTTCTTGTCCAAGACGACCCGCTAGAAG
ACCTCATGAGGCTGATCATCGCCGTGGATGACGAAGTACTGGCTTCGGAT
GCCCACCGCAACAAGTCCGGGGTACATCGAGACAGCTTGGGGTACCTGAG
GGGATTGTCTTCGGACCTACTCAAGCTTAGAACGACGCGGCTGTCGAGCG
AGGGGAGAGTTCTTCCCCCGGTGCACTTCGGGATTCTCGTCATTCTCGCC
AGGTGA
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