prot_Ecto-sp13_S_contig16141.4476.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16141.4476.1
Unique Nameprot_Ecto-sp13_S_contig16141.4476.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length620
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16141.4476.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 820 bits (2118), Expect = 3.260e-282
Identity = 519/703 (73.83%), Postives = 533/703 (75.82%), Query Frame = 0 
Query:    1 RLWTRPSILIAGRNALDRLPANVPGTILYLDLSWNR---------------------------LASLEGFAALLNLRELDVSHNSVQDMLDLASNVDLRLLRXXXXXXRRXXXXXXXXXXXXXXXXXXXXKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPPPVLSLSLSSTXXXXXXXXXXXPGKPADHHRHNGRRMPHRTSRGATSSCSPDRRGSEPIREGFMATSSLDFVGDLSVERRWRDSAVAGRSVYSQFAPDSHQRAAANGGVRGGARARXXXXXXXXRGREPCIKVTTGGGGPTVAPGSYAEIFVAAMRKEGSTSRAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGHRAVAQASHGET------------------------------------------------GAARREAWSQARREGAVGDGKMQGQRTSHRQRNIAPGVGDGGIVRNRWALGVRSLEPTTRSPRRRTPV--------AAASSHHPRQASGTGGDQAFDTDGSAGGVGGGTSSSSKIGRGGAVGPRINVRSNSGSNARGGRRVGRDSWAKPGATRKPASVSNSRSRQTPSTASRGETVTVRGRGGTRSGGGGKTAQPALSKHSRVGGSGGGIPNGNVRSPSSYRFRTTLGRRGSQQPPRPFAPVASPWTPREDARPW 620
            RLWTRPSILIAGRN+LDRLPANVPGTILYLDLSWNR                           LASLEGFAAL NLRELDVSHNSVQDML L SNV+LR+LR    XX  XXXXXXXXXXXXXXXXXXX KTK DVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPP VLSLSLSST   XXXXXXXX GKPADHHRHN RRMPHRTSRG  SSCSPDRRGS  IREGFMA SSLDFVGDLSVERRWRDSAVAG+S+Y QFAPDSHQRAAA+GGVRGGARARXXXXXXXX GREPCIKVTTGGGGPTVAPGSYAEIFVAAMRK+GSTSRAV                                     QPGHRA AQASHGET                                                GAARREAWSQARREGAVGDGKMQGQR S  QRNIAPGVG GG+ RN+ A+GVRSLEPTTRS RRRT V        AAASS HPRQASGTGGDQAFDTDGSA GVGGGTSSSSK+GRGGAVGPRI+VRSNSGSNARGGRR G D WAKPGATRKP S+SNSRSRQTPSTAS GE VT RGRGGTRSG G KTA+ ALSK SR GGSGGG PNGN RSPSSYRFRTTLGRRGSQQPPRP APVASPWTPREDARPW
Sbjct:  162 RLWTRPSILIAGRNSLDRLPANVPGTILYLDLSWNRRVRSRYILLGATQHFPCPPLCSHPNQRLASLEGFAALPNLRELDVSHNSVQDMLGLGSNVNLRVLRISYNXXXXXXXXXXXXXXXXXXXXXXXLKTKEDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPPQVLSLSLSSTMPLXXXXXXXXXGKPADHHRHNSRRMPHRTSRGPPSSCSPDRRGSGSIREGFMAASSLDFVGDLSVERRWRDSAVAGKSLYPQFAPDSHQRAAASGGVRGGARARXXXXXXXXXGREPCIKVTTGGGGPTVAPGSYAEIFVAAMRKQGSTSRAVVDDPAAFTTAGVSNSSTLAPTQKGVVGTVATERQQQQQPGHRAAAQASHGETSVAAAYRPGKRRIPAGGAEVXXXXXXXXXXXAATASLLSYRGLSRAERGAARREAWSQARREGAVGDGKMQGQRASRWQRNIAPGVGGGGVARNKRAVGVRSLEPTTRSARRRTSVSGSQMCRVAAASSRHPRQASGTGGDQAFDTDGSAEGVGGGTSSSSKLGRGGAVGPRISVRSNSGSNARGGRRSGGDLWAKPGATRKPVSISNSRSRQTPSTASGGEAVTTRGRGGTRSGDGEKTARSALSKDSRAGGSGGGRPNGNDRSPSSYRFRTTLGRRGSQQPPRPPAPVASPWTPREDARPW 864
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BLAST of mRNA_Ecto-sp13_S_contig16141.4476.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 769 bits (1987), Expect = 6.580e-269
Identity = 505/620 (81.45%), Postives = 512/620 (82.58%), Query Frame = 0 
Query:    1 RLWTRPSILIAGRNALDRLPANVPGTILYLDLSWNRLASLEGFAALLNLRELDVSHNSVQDMLDLASNVDLRLLRXXXXXXRRXXXXXXXXXXXXXXXXXXXXKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPPPVLSLSLSSTXXXXXXXXXXXPGKPADHHRHNGRRMPHRTSRGATSSCSPDRRGSEPIREGFMATSSLDFVGDLSVERRWRDSAVAGRSVYSQFAPDSHQRAAANGGVRGGARARXXXXXXXXRGREPCIKVTTGGGGPTVAPGSYAEIFVAAMRKEGSTSRAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGHRAVAQASHGETGAARREAWSQARREGAVGDGKMQGQRTSHRQRNIAPGVGDGGIVRNRWALGVRSLEPTTRSPRRRTPVAAASSHHPRQASGTGGDQAFDTDGSAGGVGGGTSSSSKIGRGGAVGPRINVRSNSGSNARGGRRVGRDSWAKPGATRKPASVSNSRSRQTPSTASRGETVTVRGRGGTRSGGGGKTAQPALSKHSRVGGSGGGIPNGNVRSPSSYRFRTTLGRRGSQQPPRPFAPVASPWTPREDARPW 620
            RLWTRPSILIAGRN+LDRLPANVPGTILYLDLSWNRLASLEGFAAL NLRELDVS                    XXXXXX  XXXXXXXXXXXXXXXXXX  KTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGM LLDGK PPVLSLSLSST    XXXXXXX GKP DHHRHN RRMPHRTSRG  SSCSPDRRGS  IREGFMA+SSLDFVGDLSVERRWRDSAVAGRS   QF PDSHQRA A GGVRGG R R        RGREPCIKVTTGGGGPTVAPGSYAEIFVA MRKEGSTSR          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX        Q      GAARREAWSQARREGAVGDGKMQ QRTSHRQR +APGVG G I RNR ALGVRSLEPTTRS RRRTP       HPRQASG GGDQAFDTDGSAGGVG    SSSK+GRGGAV PRI+VRSNSGSNAR GRRVG DSWAKPGATRKPAS+SNSRSRQTPSTASRGETVTVRGRGGTRSGGGGKTA+ ALSK SR  GSGGG PNGN RSPSSYRFRTTLGRRGSQQPPRP APVASPWTPREDARPW
Sbjct:  136 RLWTRPSILIAGRNSLDRLPANVPGTILYLDLSWNRLASLEGFAALPNLRELDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMSLLDGKAPPVLSLSLSSTMPLPXXXXXXXXGKPGDHHRHNSRRMPHRTSRGTPSSCSPDRRGSGSIREGFMASSSLDFVGDLSVERRWRDSAVAGRS---QFTPDSHQRAVARGGVRGGVRVRGGGDGNGGRGREPCIKVTTGGGGPTVAPGSYAEIFVAGMRKEGSTSRVGIDDPAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQR-----GAARREAWSQARREGAVGDGKMQEQRTSHRQRKVAPGVGGGDIARNRRALGVRSLEPTTRSARRRTPAXXXXXRHPRQASGAGGDQAFDTDGSAGGVGXXXXSSSKLGRGGAVNPRISVRSNSGSNARVGRRVGGDSWAKPGATRKPASISNSRSRQTPSTASRGETVTVRGRGGTRSGGGGKTARSALSKDSRAEGSGGGKPNGNARSPSSYRFRTTLGRRGSQQPPRPTAPVASPWTPREDARPW 747
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16141.4476.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT2_9PHAE3.260e-28273.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE3_ECTSI6.580e-26981.45Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 90..111
e-value: 260.0
score: 4.0
coord: 46..67
e-value: 79.0
score: 8.2
coord: 24..45
e-value: 390.0
score: 2.6
coord: 68..89
e-value: 3.3
score: 16.7
NoneNo IPR availablePANTHERPTHR15454:SF7SD03973Pcoord: 30..196
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 30..196
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 23..156
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 25..158
e-value: 5.8E-25
score: 89.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 92..113
score: 6.064
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 48..69
score: 7.142
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 26..47
score: 7.296
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 70..91
score: 8.035

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16141contigEcto-sp13_S_contig16141:2..3981 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16141.4476.1mRNA_Ecto-sp13_S_contig16141.4476.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16141 2..3981 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16141.4476.1 ID=prot_Ecto-sp13_S_contig16141.4476.1|Name=mRNA_Ecto-sp13_S_contig16141.4476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=620bp
RLWTRPSILIAGRNALDRLPANVPGTILYLDLSWNRLASLEGFAALLNLR
ELDVSHNSVQDMLDLASNVDLRLLRISHNRIRRIEGIHQLKRLEEVDLSH
NLLKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMR
LLDGKPPPVLSLSLSSTMPLPPPPRPPAPGKPADHHRHNGRRMPHRTSRG
ATSSCSPDRRGSEPIREGFMATSSLDFVGDLSVERRWRDSAVAGRSVYSQ
FAPDSHQRAAANGGVRGGARARGSGDGDGGRGREPCIKVTTGGGGPTVAP
GSYAEIFVAAMRKEGSTSRAVDDDPAAAPTAGVSNNSTLAPTQKGAAGTA
ATQRQQQQQPGHRAVAQASHGETGAARREAWSQARREGAVGDGKMQGQRT
SHRQRNIAPGVGDGGIVRNRWALGVRSLEPTTRSPRRRTPVAAASSHHPR
QASGTGGDQAFDTDGSAGGVGGGTSSSSKIGRGGAVGPRINVRSNSGSNA
RGGRRVGRDSWAKPGATRKPASVSNSRSRQTPSTASRGETVTVRGRGGTR
SGGGGKTAQPALSKHSRVGGSGGGIPNGNVRSPSSYRFRTTLGRRGSQQP
PRPFAPVASPWTPREDARPW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt