mRNA_Ecto-sp13_S_contig1612.4472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1612.4472.1
Unique NamemRNA_Ecto-sp13_S_contig1612.4472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1612.4472.1 vs. uniprot
Match: A0A6H5L721_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L721_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 5.530e-116
Identity = 180/182 (98.90%), Postives = 180/182 (98.90%), Query Frame = 1 
Query:    1 PVLFVTGAGLTPAQASSRNMETHASLLKWVQVMATPGASPVTSTRELESKCLKKERCALVMKAGPLEKQDDVKDAFKDLMGNHRNLKFVSIDSTKLETSLEKKLGIKPVDGSHQLVHFTRYNVTGKVKVGTPRWGVQVYSGALETASMSVFIEGAAIAGTKEKTALTRLPTVMTRKEPKAKP 546
            PVLFVTGAGLTPAQASSRNMETHASLLKWVQVMATPGASPVTSTRELESKCLKKERCALVMKAGPLE  DDVKDAFKDLMGNHRNLKFVSIDSTKLETSLEKKLGIKPVDGSHQLVHFTRYNVTGKVKVGTPRWGVQVYSGALETASMSVFIEGAAIAGTKEKTALTRLPTVMTRKEPKAKP
Sbjct:  126 PVLFVTGAGLTPAQASSRNMETHASLLKWVQVMATPGASPVTSTRELESKCLKKERCALVMKAGPLE--DDVKDAFKDLMGNHRNLKFVSIDSTKLETSLEKKLGIKPVDGSHQLVHFTRYNVTGKVKVGTPRWGVQVYSGALETASMSVFIEGAAIAGTKEKTALTRLPTVMTRKEPKAKP 305
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BLAST of mRNA_Ecto-sp13_S_contig1612.4472.1 vs. uniprot
Match: D8LFH7_ECTSI (NIMA-like PK similar to Serine/threonine-protein kinase Nek1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH7_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.080e-59
Identity = 106/183 (57.92%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:    1 PVLFVTGAGLTPAQASSRNMETHASLLKWVQVMATPGASPVTSTRELESKCLKKERCALVMKAGPLEKQDDVKDAFKDLMGNHRNLKFVSIDSTKLETSLEKKLGIKPVDGSHQLVHFTRYNVTGKVKVGTPRWGVQVYSGALETASMSVFIEGAAIAGTKEKTALTRLPTVMTRKEPKAKPP 549
            P+LFV GA + P QAS  NM++ ASL+KW  +  TP ASPVTSTR LE+KC+KKE+C L+M AG LE  DD   A K++M  HR ++FVS+D+TKLETS+EK+  IKPVDG+H  VHFTRYNV    K GTPRWGVQVY G L+T SMS F+      G +EK  L   PTV TRK  K K P
Sbjct:  422 PILFVAGAEMKPVQASPWNMDSEASLVKWASIAITPAASPVTSTRSLETKCMKKEQCVLIMLAGQLESADDY--ALKEVMARHRKVRFVSMDATKLETSIEKRFDIKPVDGAHHFVHFTRYNVPVNAKAGTPRWGVQVYRGKLDTDSMSAFL-----GGNEEKQGLRHAPTVSTRKATKKKRP 597
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1612.4472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L721_9PHAE5.530e-11698.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LFH7_ECTSI2.080e-5957.92NIMA-like PK similar to Serine/threonine-protein k... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1612contigEcto-sp13_S_contig1612:14764..15970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score207.6
Seed ortholog evalue4.9e-51
Seed eggNOG ortholog2880.D8LFH7
Model size549
KEGG koko:K08857
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
Cds size549
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462851.168696-CDS-Ecto-sp13_S_contig1612:14763..149281681462851.168696-CDS-Ecto-sp13_S_contig1612:14763..14928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 14764..14928 -
1681462851.1846702-CDS-Ecto-sp13_S_contig1612:15306..154891681462851.1846702-CDS-Ecto-sp13_S_contig1612:15306..15489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 15307..15489 -
1681462851.2112195-CDS-Ecto-sp13_S_contig1612:15769..159701681462851.2112195-CDS-Ecto-sp13_S_contig1612:15769..15970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 15770..15970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1612.4472.1prot_Ecto-sp13_S_contig1612.4472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1612 14764..15970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1612.4472.1

>prot_Ecto-sp13_S_contig1612.4472.1 ID=prot_Ecto-sp13_S_contig1612.4472.1|Name=mRNA_Ecto-sp13_S_contig1612.4472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
PVLFVTGAGLTPAQASSRNMETHASLLKWVQVMATPGASPVTSTRELESK
CLKKERCALVMKAGPLEKQDDVKDAFKDLMGNHRNLKFVSIDSTKLETSL
EKKLGIKPVDGSHQLVHFTRYNVTGKVKVGTPRWGVQVYSGALETASMSV
FIEGAAIAGTKEKTALTRLPTVMTRKEPKAKPP
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mRNA from alignment at Ecto-sp13_S_contig1612:14764..15970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1612.4472.1 ID=mRNA_Ecto-sp13_S_contig1612.4472.1|Name=mRNA_Ecto-sp13_S_contig1612.4472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1612:14764..15970- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTTCTGTTCGTCACCGGCGCCGGGCTGACGCCAGCCCAGGCCTCCAG
CCGCAACATGGAGACGCACGCGTCCCTGCTCAAGTGGGTGCAGGTCATGG
CCACGCCGGGAGCGTCCCCCGTGACGTCCACGCGCGAGCTGGAGAGCAAG
TGCTTGAAGAAGGAGCGGTGTGCATTGGTCATGAAGGCGGGACCGCTTGA
GGTGAGGCGTGCGTTTTCGCGCCTTGCCTTTGTGTTTTTGGCGTTCTCTG
GCACCCCTTCCAAGCAAAGGATGATCGCAAAGTCGAGGCTTTCGTGGTGT
GGTGAAAACGCTCCACCTTTACGACGAGGTTATTGGGTGGCGGCGACAGG
CCGCTTGGTATATTCCCGGCTTTTGATTTTGGCAGCAGGAAACATTTCTC
TTCACGACAACAGCGGTACACACGTGTCGAGAAGCTTACCTTGTCGTACA
TGTTGCTCTGTTTACACCACCATGCAACGAGAAACAGGACGATGTGAAGG
ATGCCTTCAAGGATCTCATGGGCAATCACCGCAACCTCAAGTTCGTGAGC
ATAGACTCGACGAAGCTGGAGACATCCCTGGAGAAGAAGCTGGGCATCAA
GCCCGTCGACGGGTCTCACCAGCTGGTGCACTTCACTCGCTACAACGTCA
CGGGGAAAGTGAAGGTGCACTATCGGTATGCCAGAAAGGATCGGGTGCTC
TCGCGCGCTTTGACAGGGCTGCGGTACTCAGCTTGCTTGGTTGGGCAATA
CGTTCATTGCCCCGCCGACCAACCGTTCAGTGCAAACCCCTATAGTCCGT
CACTCACTGATGTTGCACGAGTTGTGGCTTTTTTCTTCTCCTGAATGGGT
TCGGGATTGTTTTCTTCGTTGCCATTTCTGCTGTCATAGTACTTATAGAT
ATCCTTGCACTTAAATCACGGCAGTACGCCTCCAAGAACCTACCAGTTGC
CTCACCGTCAACGATCTTGTGCTTCCCTACCCGCGGGCACCAATGTGTAA
GCCACAACCCCCCCCCCCCGATCTTCCTCCGCCTCCCCGAAGGTGGGCAC
GCCTCGCTGGGGAGTTCAGGTATACAGCGGAGCCTTAGAGACGGCCTCGA
TGTCGGTGTTCATCGAAGGGGCGGCGATAGCGGGAACCAAGGAAAAGACG
GCGCTCACACGCCTCCCCACGGTGATGACCCGCAAGGAGCCCAAAGCGAA
ACCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1612:14764..15970-

>mRNA_Ecto-sp13_S_contig1612.4472.1 ID=mRNA_Ecto-sp13_S_contig1612.4472.1|Name=mRNA_Ecto-sp13_S_contig1612.4472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1612:14764..15970- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTTCTGTTCGTCACCGGCGCCGGGCTGACGCCAGCCCAGGCCTCCAG
CCGCAACATGGAGACGCACGCGTCCCTGCTCAAGTGGGTGCAGGTCATGG
CCACGCCGGGAGCGTCCCCCGTGACGTCCACGCGCGAGCTGGAGAGCAAG
TGCTTGAAGAAGGAGCGGTGTGCATTGGTCATGAAGGCGGGACCGCTTGA
GAAACAGGACGATGTGAAGGATGCCTTCAAGGATCTCATGGGCAATCACC
GCAACCTCAAGTTCGTGAGCATAGACTCGACGAAGCTGGAGACATCCCTG
GAGAAGAAGCTGGGCATCAAGCCCGTCGACGGGTCTCACCAGCTGGTGCA
CTTCACTCGCTACAACGTCACGGGGAAAGTGAAGGTGGGCACGCCTCGCT
GGGGAGTTCAGGTATACAGCGGAGCCTTAGAGACGGCCTCGATGTCGGTG
TTCATCGAAGGGGCGGCGATAGCGGGAACCAAGGAAAAGACGGCGCTCAC
ACGCCTCCCCACGGTGATGACCCGCAAGGAGCCCAAAGCGAAACCGCCG
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