mRNA_Ecto-sp13_S_contig1612.4471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1612.4471.1
Unique NamemRNA_Ecto-sp13_S_contig1612.4471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: D7FVX7_ECTSI (Proliferating cell nuclear antigen n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX7_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 2.730e-180
Identity = 259/260 (99.62%), Postives = 260/260 (100.00%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 907
            MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYL+LFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE
Sbjct:    1 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 260
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A812RGX4_SYMMI (Proliferating cell nuclear antigen n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RGX4_SYMMI)

HSP 1 Score: 385 bits (989), Expect = 5.030e-130
Identity = 181/258 (70.16%), Postives = 224/258 (86.82%), Query Frame = 2 
Query:  125 KMYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 898
            KM+EARL+Q ++LKKIIEA+RELV DANLDCS +GISMQAMDSSHVSLCAL++R++ F HYRCD  +SLGL+T ++SKILKCAGNDD VTLK+ D +D LT++FES KQDRISDF++KLM+I+SEHLGIP TEY+C +++PS+EF RIMRDL V+GDTCTIAC K+GV FS SGD+G GNI++++N SVDK+ED V + M+EPV L FALRYL  F KATPLGPTVT+S++PD P++VEYP+   GYVRYYLAPKIDE
Sbjct:    1 KMFEARLVQGAILKKIIEAIRELVIDANLDCSSTGISMQAMDSSHVSLCALLMRAEAFDHYRCDVDMSLGLNTPNLSKILKCAGNDDVVTLKSTDQSDTLTLVFESSKQDRISDFDMKLMEIESEHLGIPDTEYSCTVRLPSSEFQRIMRDLTVLGDTCTIACTKEGVRFSASGDLGTGNILLKHNASVDKDEDAVVIDMQEPVELLFALRYLNTFTKATPLGPTVTLSLSPDLPILVEYPVGDLGYVRYYLAPKIDE 258
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A835ZEE1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE1_9STRA)

HSP 1 Score: 379 bits (972), Expect = 1.900e-127
Identity = 183/260 (70.38%), Postives = 221/260 (85.00%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 907
            M+EA+L +ASLLKKI+EA+RELVTDANLDCSE+GI+MQAMDSSHVSLCAL +RSDGF HYRCDR+LSLGL+  ++SKILKCAGN+D  TL+ ED AD LT+ FESPKQ+RIS+FELKL+ +D+EHLGIP T Y   ++MPSAEF RI+RDL VIGDTC+IA  KDGV F V GD+G G+I V+ NT+ +KEE++V V MEEPV L FALRYL  FAKATPLGP V +SM+PD PVVVE+PI+T GY+R+YLAPKIDE +E
Sbjct:    1 MFEAKLNEASLLKKIVEAIRELVTDANLDCSEAGITMQAMDSSHVSLCALNLRSDGFDHYRCDRNLSLGLNLANLSKILKCAGNNDVCTLRTEDDADTLTVTFESPKQERISEFELKLIALDAEHLGIPDTNYKAQVRMPSAEFQRIIRDLSVIGDTCSIAVGKDGVRFGVEGDLGSGSISVKQNTAAEKEEERVEVHMEEPVELTFALRYLNFFAKATPLGPIVALSMSPDVPVVVEFPIETVGYLRFYLAPKIDEEEE 260
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A7S2DHU7_9STRA (Proliferating cell nuclear antigen n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHU7_9STRA)

HSP 1 Score: 376 bits (966), Expect = 2.350e-126
Identity = 177/262 (67.56%), Postives = 222/262 (84.73%), Query Frame = 2 
Query:  125 KMYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNT-SVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 907
            +M+EARL+Q +LLKKI+EAVR+LVTDAN+DC E G+S+QAMDSSHVSLCAL++RSDGF HYRCDR +SLGL+ G++ KILKC+GNDD VTLK+ED  D LTIMFE+P  DRISDFE+KLMDID+E LGIP+ EY C I+MPS EF R++RDL VIGDTCTI   K+G+ FSVSGD+G GN+M+R    S +KEED+V + M+EP  L FA+RYL++F KA+ LGPTV +SM+PD P+VVEYPI+TFG+VR+YLAPK+DE D+
Sbjct:   10 RMFEARLIQGNLLKKIVEAVRDLVTDANVDCKEQGLSLQAMDSSHVSLCALVLRSDGFDHYRCDRPISLGLNLGNLGKILKCSGNDDVVTLKSEDQGDLLTIMFENPAADRISDFEMKLMDIDAEQLGIPEQEYACNIRMPSGEFQRLIRDLMVIGDTCTIGVTKEGIKFSVSGDIGNGNVMLRATVGSTEKEEDQVVIEMDEPCELTFAMRYLSMFTKASGLGPTVNLSMSPDVPIVVEYPIETFGHVRFYLAPKLDEGDD 271
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A835YRT1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT1_9STRA)

HSP 1 Score: 369 bits (947), Expect = 1.160e-123
Identity = 178/260 (68.46%), Postives = 219/260 (84.23%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 907
            M+EA L +ASLLKKI++++RELVTDANLDCS++GI+MQAMDSSHVSLCAL +R+DGF H+RCDR+LSLG++  ++SKILKCAGN D VTLK+ED AD L + FES KQDRIS+FELKL+ +D+EHLGIP T Y   I+MPS +F RI+RDLQVIGDTCTI+  K+GV FSV GD+G GNI V+ N + +KEE+KV V +EEPV+L FALRYL  F KATPLGP V +SM+PD P+VVEYPIDT G+VR+YLAPKIDE +E
Sbjct:    1 MFEATLSEASLLKKIVDSIRELVTDANLDCSDAGINMQAMDSSHVSLCALSLRNDGFDHFRCDRNLSLGVNLANLSKILKCAGNTDLVTLKSEDDADTLGVKFESAKQDRISEFELKLIALDAEHLGIPDTNYKAQIRMPSTDFQRIIRDLQVIGDTCTISATKEGVRFSVEGDLGAGNIAVKQNPNAEKEEEKVEVHIEEPVSLTFALRYLNFFTKATPLGPIVALSMSPDVPIVVEYPIDTTGFVRFYLAPKIDEDEE 260
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A7S2UVI1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVI1_9STRA)

HSP 1 Score: 363 bits (933), Expect = 1.640e-121
Identity = 169/261 (64.75%), Postives = 221/261 (84.67%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVD-KEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 907
            M+EARL+   L +KII+A+++LVT+AN+ C+E+GIS+QAMDSSHVSLC LM+R+D + H+RCDR+L+LGL+TG+++KILKCAGNDD +T+KAED  D L ++FES  Q RISDFE+KLMDI SEHLGIP TEY C +QMP+AEF RI+RDL VIG+TCTI+C KDGV FSV GD+G G+I +R+ +  D KEE++V +TM+EPV L+FALRYL+ F KA+PLGPT++ISM+PD PVVVE+PI+  GY++YYLAPKID  +E
Sbjct:    1 MFEARLINGGLFRKIIDAIKDLVTEANIHCNENGISLQAMDSSHVSLCVLMLRNDMYDHFRCDRALALGLNTGNVAKILKCAGNDDIITMKAEDEPDVLQMVFESKDQSRISDFEMKLMDIQSEHLGIPDTEYKCTVQMPAAEFTRIVRDLSVIGETCTISCSKDGVKFSVEGDLGTGSITLRSTSDADTKEEERVVITMDEPVELQFALRYLSSFTKASPLGPTMSISMSPDVPVVVEFPIEGDGYIKYYLAPKIDGGEE 261
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A7R9WGG0_9STRA (Proliferating cell nuclear antigen n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WGG0_9STRA)

HSP 1 Score: 363 bits (932), Expect = 1.150e-120
Identity = 171/259 (66.02%), Postives = 214/259 (82.63%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEAD 904
            M+EARL Q  + K +IE++++LV DANL+CSE  IS+QAMDSSHVSL A+ +R+ GF HYRCDR LSLG ++ ++SKILKC+GNDD +TLKAED  D+LT+MFES  QDRI+DFELKLMDIDSE LGIP TEY C I+MPS EF RI+RD+QV+GDTC I+C K+GV FSVSGD+G GN+++RNN + +KEED+V + MEEPV L FALRYL  F KAT LGP+V ISM+PD P+VVEYPI++ G ++YYLAPKIDE +
Sbjct:   50 MFEARLTQGRIFKSLIESIKDLVQDANLECSEDEISIQAMDSSHVSLVAVALRASGFDHYRCDRPLSLGFNSANLSKILKCSGNDDKITLKAEDNGDSLTLMFESGSQDRIADFELKLMDIDSEQLGIPDTEYKCTIKMPSTEFQRIVRDMQVLGDTCVISCTKEGVRFSVSGDLGTGNVLIRNNANAEKEEDQVLIDMEEPVELTFALRYLNFFTKATALGPSVIISMSPDVPIVVEYPIESSGEIKYYLAPKIDENE 308
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: W7TJJ6_9STRA (Proliferating cell nuclear antigen n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJJ6_9STRA)

HSP 1 Score: 361 bits (926), Expect = 1.700e-120
Identity = 174/258 (67.44%), Postives = 210/258 (81.40%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEE-DKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 898
            M+EARL + SLLKKIIEA+++LV +AN+DCSE G++MQAMD+SHVSLC+L +R  GF HYRCDRS+SLGL+  ++ KILKCAGNDD VTLKAED  D LT+MFESP Q+RISDFELKLMDI++EHLGIP  EY C I MPS EF RI+RDL VIG+TC I C K+GV FSVSGD+G GN+ VR +++ D +E D+V + MEEPVTL FALRYL  F KATPLG TV + M+PD P+VVEYPID  G + Y+LAPKIDE
Sbjct:    1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDE 258
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A7S2NW67_9STRA (Proliferating cell nuclear antigen n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NW67_9STRA)

HSP 1 Score: 361 bits (926), Expect = 1.700e-120
Identity = 168/259 (64.86%), Postives = 218/259 (84.17%), Query Frame = 2 
Query:  128 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEAD 904
            M+EARL+Q  + K++I+A+++LV DAN+DCSE  +S+QAMD+SHVSL A+ ++S GF H+RCDR LSLG ++ ++SKILKCAGNDD +TLKAED  + LT+MFESP QDRI+DFELKLMDID++HLGIP TEY C I+MPS+EF RI+RD+QV+GDTCTI+C+K+GV FSVSGD+G GN++VR N+S + E D VT+ MEEPV L+FALRYL LFAKA  LG TV +SM+ D P+VVEYPI  FG++++YLAPKIDE +
Sbjct:    1 MFEARLIQGKIFKQLIDAMKDLVQDANIDCSEDELSIQAMDASHVSLVAVSLKSTGFDHFRCDRQLSLGFNSTNMSKILKCAGNDDVITLKAEDAGETLTLMFESPSQDRIADFELKLMDIDADHLGIPDTEYTCNIKMPSSEFQRIIRDMQVLGDTCTISCNKEGVRFSVSGDLGTGNVLVRANSSAENESDNVTIDMEEPVELQFALRYLNLFAKAGSLGGTVILSMSEDVPIVVEYPIGEFGFIKFYLAPKIDEEE 259
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BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Match: A0A7S2EL74_TRICV (Proliferating cell nuclear antigen n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL74_TRICV)

HSP 1 Score: 360 bits (925), Expect = 1.740e-119
Identity = 179/283 (63.25%), Postives = 223/283 (78.80%), Query Frame = 2 
Query:   77 NDTH-PLPPPLSPLS---PPKMYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDT--ADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 907
            N TH PLP P   L    P  M+EAR+ Q  + K++IE++++LV DAN+DC+E  +S+QAMDSSHVSL ++ +RS GF HYRCDR +SLG ++ +++KILKCAGNDD +TLKAED   AD LT+MFESPKQDRI+DFELKLMDIDSE LGIP T Y C +QMPSAEF RI+RDL  +GDTC I+C+K+GV FSVSGD+G GN++VR+N S DK+E+KV + MEEPV L FALRYL  F KAT LGP V ISM+PD P+VVEYPI+  G ++YYLAPKIDE + 
Sbjct:   34 NATHTPLPHPSLDLKLNKPTTMFEARINQGRIFKQLIESIKDLVQDANIDCTEDDVSIQAMDSSHVSLVSVTLRSSGFDHYRCDRPISLGFNSANMAKILKCAGNDDEITLKAEDADAADTLTLMFESPKQDRIADFELKLMDIDSEQLGIPDTSYKCTVQMPSAEFQRIIRDLGSLGDTCNISCNKEGVRFSVSGDLGTGNVLVRSNASADKDEEKVLIDMEEPVELTFALRYLNFFTKATALGPQVVISMSPDVPIVVEYPIEGVGDIKYYLAPKIDENES 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1612.4471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX7_ECTSI2.730e-18099.62Proliferating cell nuclear antigen n=2 Tax=Ectocar... [more]
A0A812RGX4_SYMMI5.030e-13070.16Proliferating cell nuclear antigen n=1 Tax=Symbiod... [more]
A0A835ZEE1_9STRA1.900e-12770.38Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A7S2DHU7_9STRA2.350e-12667.56Proliferating cell nuclear antigen n=1 Tax=Dictyoc... [more]
A0A835YRT1_9STRA1.160e-12368.46Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A7S2UVI1_9STRA1.640e-12164.75Proliferating cell nuclear antigen n=1 Tax=Fibroca... [more]
A0A7R9WGG0_9STRA1.150e-12066.02Proliferating cell nuclear antigen n=2 Tax=Odontel... [more]
W7TJJ6_9STRA1.700e-12067.44Proliferating cell nuclear antigen n=2 Tax=Monodop... [more]
A0A7S2NW67_9STRA1.700e-12064.86Proliferating cell nuclear antigen n=1 Tax=Leptocy... [more]
A0A7S2EL74_TRICV1.740e-11963.25Proliferating cell nuclear antigen n=1 Tax=Trieres... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1612contigEcto-sp13_S_contig1612:8145..12424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score512.3
Seed ortholog evalue1.3e-142
Seed eggNOG ortholog2880.D7FVX7
Preferred namePCNA
Model size1372
KEGG koko:K04802
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000302,GO:0000307,GO:0000700,GO:0000701,GO:0000723,GO:0000731,GO:0001101,GO:0001889,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006283,GO:0006284,GO:0006287,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006959,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007507,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0014823,GO:0015630,GO:0016043,GO:0016070,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0019985,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030331,GO:0030337,GO:0030703,GO:0030707,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031099,GO:0031100,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031960,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032355,GO:0032404,GO:0032405,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0033993,GO:0034399,GO:0034599,GO:0034614,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035257,GO:0035258,GO:0035556,GO:0035690,GO:0036211,GO:0042221,GO:0042276,GO:0042493,GO:0042542,GO:0042592,GO:0042698,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043626,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044849,GO:0044877,GO:0045005,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046686,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051336,GO:0051345,GO:0051384,GO:0051427,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061008,GO:0061695,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070206,GO:0070207,GO:0070301,GO:0070557,GO:0070647,GO:0070887,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071236,GO:0071466,GO:0071478,GO:0071482,GO:0071548,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0097159,GO:0097237,GO:0097327,GO:0097421,GO:0098772,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902065,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902554,GO:1902679,GO:1902806,GO:1902807,GO:1902850,GO:1902911,GO:1902990,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001020,GO:2001022,GO:2001141
Exons4
EggNOG free text desc.DNA polymerase processivity factor activity
EggNOG OGsCOG0592@1,KOG1636@2759
Ec32 ortholog descriptionPCNA
Ec32 orthologEc-01_002530.1
Cds size783
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1612.4471.1prot_Ecto-sp13_S_contig1612.4471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1612 8607..12297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462851.0758815-UTR-Ecto-sp13_S_contig1612:8144..86061681462851.0758815-UTR-Ecto-sp13_S_contig1612:8144..8606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1612 8145..8606 -
1681462851.1238947-UTR-Ecto-sp13_S_contig1612:12297..124241681462851.1238947-UTR-Ecto-sp13_S_contig1612:12297..12424Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1612 12298..12424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462851.0879385-CDS-Ecto-sp13_S_contig1612:8606..88131681462851.0879385-CDS-Ecto-sp13_S_contig1612:8606..8813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 8607..8813 -
1681462851.0983384-CDS-Ecto-sp13_S_contig1612:9634..97961681462851.0983384-CDS-Ecto-sp13_S_contig1612:9634..9796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 9635..9796 -
1681462851.1070614-CDS-Ecto-sp13_S_contig1612:10554..106491681462851.1070614-CDS-Ecto-sp13_S_contig1612:10554..10649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 10555..10649 -
1681462851.1151512-CDS-Ecto-sp13_S_contig1612:11978..122971681462851.1151512-CDS-Ecto-sp13_S_contig1612:11978..12297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1612 11979..12297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1612.4471.1

>prot_Ecto-sp13_S_contig1612.4471.1 ID=prot_Ecto-sp13_S_contig1612.4471.1|Name=mRNA_Ecto-sp13_S_contig1612.4471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCAL
MIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALT
IMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRD
LQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTME
EPVTLKFALRYLALFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYY
LAPKIDEADE*
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mRNA from alignment at Ecto-sp13_S_contig1612:8145..12424-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1612.4471.1 ID=mRNA_Ecto-sp13_S_contig1612.4471.1|Name=mRNA_Ecto-sp13_S_contig1612.4471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1612:8145..12424- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACCACCTGTCTCGCCGTTCCCTACCGCAACAAGCGCTCGCCCTCCA
ACTCCTCAACTTCACCTGCTTCCCTCAACGACACACACCCGCTACCACCA
CCTCTCTCCCCGCTCTCTCCCCCGAAAATGTACGAAGCGAGGCTACTCCA
GGCGTCTCTTCTCAAGAAGATCATCGAGGCCGTTCGAGAGCTGGTGACAG
ATGCGAACCTCGACTGTTCCGAGTCGGGCATCTCGATGCAGGCGATGGAC
TCGAGCCACGTCTCTCTCTGCGCGCTAATGATCCGCAGCGACGGCTTCCA
GCACTACCGGTGCGACCGGAGTCTCTCGCTGGGTCTCTCGACCGGCAGCA
TCTCCAAGATCCTCAAGTGTGCGGGGAACGACGACACGGTGACTCTGAAG
GCGGAGGACACAGCAGACGCCCTCACCATCATGTTCGAGAGCCCAAGTGA
GTTTGTAGTGGTCTATCATGCCCTTACCCGCACCAAGCAAAGAGAGAGAG
AGAGCTTTTTTGTCTTCTGGGGCTTGCGATAGAGCAAACCTTTACGGCCG
CAAGGCGTTTGTCCCGAAGGAGTTGTTTTGTTTTGGATTGGACGACGCGC
TATTTTCTGCGACTTGTTTTAAAATCTTGACGGAGCGCGTGACAAATCGG
TTTAGCTTCGCGCGCGCGCCACACACCGGGTGTCTCGGATGTGCGTTACA
GGGGTTGTGGGGTCATCTGCAGCGGCGGTAGCGCAGGGGAAGGAGACGAA
TCTTGGCCATTTTGCGATCCTGGTGTGCTTCCGTCGTCTGGGAGTAGGTC
GGGTGCGAGGGCATGCCAAGCTATTGGCATGAACTTGATTCAAACTCAAC
CCGACTTTTTGAAAACAACGCAGCATCACCATTTCGTTTTGGAAACCAGT
GGGCCACAAGGTCGATGGATGCTGCTGCCATTCGATGGATCTGATCCCAA
GCCGCCGCACTTTCTGCCGGTGGCCCGGTAGTCTCGACTGGCCGCTCCTC
AGGGAGCACCGCGCTTTACGCTCTCGATGCCGTTACAGGCGCGGAATGTG
TGTCCTACATAGTGCTATCTGCCGCTTGCCCCTCTCAGTTTTTGAATCCA
ACCATCCAACCCCGCCGGAAAAGACCGCCTGCTGCCCTCGTGTAGCTCCA
CAGAGGCTCTGGAGTATGGATGCGAGGCCACCCGTTGACCACACGCCTTT
GGGATGTACCGAAGTTGACGCTTCAGGTTGTGGTGGTCACCTTCACAGAA
CCTCTTGGCTCTCCCGGCTGTGCACCACCTATTGGCGAGAAGGGAACTCG
CTATTTTTTCAAAAATTCAAAATTCAAACCGCCCTTTTTGTGGGCTCTGG
TCATGTGCCGGAGGATCTGACCGTCAATGCACAGCAGTCCCTCGCTTGCA
TGGCTAGCTCGGTGTGCTTGTTGCAAGCCGTGTGGCCTCCTTCATAGCGG
GAGACGGACTTTGTTCAGATTTTCTTCGTGCGAGTTCTGCGTGCGTGTAT
ACGAATCCTTATGGTTTTCTCTTGCTGCAACAAATTCTACACATCAGCGG
ATCTGCTGTCTGCTGTCGAACGATTTTCCACGCGTTCCTTCCCCCGACCG
GAGAGGTAGACGCCAACAAAAACAACAGTGCACCTTATGGGGATGGAACG
ACACAGCCGCCATCTCGGATAATGCCCCCTCGTGCTCTTGGTGGTGCGTG
AAGACAACTCACACATGCCGTTTTCACTCGATGTGCATCCCTCTCTCGCT
GTCGATCTCCCTCCGTGTCTTCAAGAACAAGACCGCATCTCAGACTTCGA
GCTCAAGTTGATGGACATTGACAGCGAGCACCTCGGGATCCCAAAGACAG
AGTACAACTGCATCATCCAGGTGGGCAGCGGTGTTGGCGGCGTTGCTGCC
GACGACTTGAAAAATGGATTACTAGTGAACCCGTTGTTTTAAGACCGTAG
CGGTGTGTGGACTACTGTAATTTTTTACTGCTGCAACGTAGTGTTGAAGT
CTAGCTCCGAGCTGTGCTGTTCCAGCCCCTGCGATTCGGGGTAATCGTCG
GCCAAACTGAGGACGCTGGAAGCGAGATGTCCGGTTGCCCGTTCTCTCTC
ATGGGACGTCTCGCTTCCAGCGCCATGAGTGCGTCTCGCTTCCAGCGCCC
CTGGTACCCGTAAACGGTTAGAATCGCAGGGACTGGAACATCACAAGCTT
GGAGTGATTTTGGTCTCCTGTCAAGGTGCAGTTGTGCAACTTGGTTAAGT
TCCTCAGGGTAGACAACCTGCGAACGATACATGTTGTCTTGATGCATTTG
TTGTTACTCAACCGGAGTGGCTGGTCCTGCCACAACACATTGTATCGACC
TACCTCACGCGTGTATACCAAAACGCAGTGTGGTGCACTACTGTATCACG
ACTGCTTGGTCGTTCAGGGTGAACCTTCATCTTTTGCCCACGGCGACGTT
GCGGTACAACTGAGAAGAAAAAGTATATACTGTGAACAAACGAGCTGCTC
GCTGCACCCGTTGTAACGCGGTTCGATCGTCCGCACAACCGGCGTTTCCT
GTTTCTTGACCGTATATCCCGTCTGTTTGTGGCCGTGTTGTCACGCCTCC
CATCTCGACAACACCATCTTCACCACAGATGCCTTCGGCAGAGTTCGCAC
GAATCATGAGGGACTTGCAAGTGATCGGGGATACGTGCACCATCGCGTGC
GATAAGGACGGGGTAAACTTCTCCGTATCGGGGGACATGGGGAAGGGAAA
CATCATGGTCCGAAACAACACCTCGGTCGACAAGGAAGAGGTGAGAGCTG
CAGGCAGACAAGCGGGGGGTGGCGCGCTTCTTGTTGTGTGTTGTTTTTTG
GAGAGGCTGCATCTACCGTAGGATGTGTTTGCTCTCGCTGCTTCGTGTGT
TGTTTCGGGACAGGCTTCACCTACCGCGGGATTTTGGAAAAACCCTCATC
TACCGCAGTTGACGTAGAATGCCACCCCCTGGACTGCTTCTCCAAGCTCG
ATTTCTCTGCAGCAGAAAGAGTGCGGAGCCCCGACGTAGCGGCGTCGTCA
CCGTCTCGTCGTGGATTAATGGAGCTGCGAACATCGATTTAGGGGGGGTG
ATTTCTCGTGTCACCTACGGGAGTCGATCCTCATCGACGGTAGTAGTCAC
GGTTGGTATTGGGGTTTGAGCCTTTGCACGTTCTGGAGTTGACGTTGGAA
ACGTCTGAATCCGGACAGCAGAGAGAAATAAGGGGTGAGAATCGCGGCAC
CGTCGGTGGGGACGCCCTTTTATAGTTCTTTCATGGCAGTGTCTCTTTCC
TTGTCGCAACGCAGGGAGTAGTCGGTCTCGAGATTCCTCTTCCTTCTTGT
TGGTCGTGTGGAGTGACTGTTGCTGACGCGGAGGTCGTCCGAAGGAGCAC
CTATGTACCTTTCTTGTTGAAAGCCTACTCAATCTACTCATGTTTTCCAA
TTTATACGATCATATGGGATCAAGTTAGAACCGGTTTAGTTGGGGTTGCA
TAGGGGCCGCGTGCCCCCGTGCCTGGTCTTCTCTCGTAGTAAATTTGCTT
TCGTCGCGTAGGCCGTCCTTGGTTCTAATCGGAACCGTCGCTCAATGTAT
TTTTTTCTCAGGACAAGGTGACGGTTACAATGGAGGAGCCCGTCACTCTC
AAGTTCGCGCTTCGGTACCTGGCGCTCTTCGCGAAAGCAACCCCGTTGGG
CCCCACGGTGACCATCTCCATGACACCAGACAACCCGGTAGTAGTGGAGT
ACCCCATCGACACCTTCGGCTACGTACGATACTACCTCGCACCCAAGATC
GACGAGGCTGACGAGTAGACCTTTGTATACAAATCAAATTGTTTTCACGT
GTTTCTTTTGTGTTAGGGCGGGGGCATCGGAAAGGATAACGTTGGACAGC
CTGCTGGTGCCATGGTAGTGGTATCCGCCACAACAGCCGCTGTTCTGGTC
CCATCGACAGCAGCAGTAGGGCTGCTTGATACGCCACACAGCGGCGTTGT
TCATTTTTGTAAAGTTCCTTTATTCCTGCTTGTTTTTAGCTAGACGAAGG
GAGGGTAGGGTACATTCAAGTCGAGATTTCGTTATTGTTTTTTCAGACGT
TGGGTCTAGTCTTTTCTTGTTTTGCACCGGTCCTCAACAGCAAATGTTTG
TCATGGTGGACAAGCGTTGTCGAAAAGGGCGTGTGTTCAAAGCAGGCTTA
AGAGTTACATGTCCTCGCGCGGAGAGGTTCGGCCGAAGGCTGGCGCCGAT
GCCTGTACATGCCCCGCTACACACACACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1612:8145..12424-

>mRNA_Ecto-sp13_S_contig1612.4471.1 ID=mRNA_Ecto-sp13_S_contig1612.4471.1|Name=mRNA_Ecto-sp13_S_contig1612.4471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1612:8145..12424- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGAAGCGAGGCTACTCCAGGCGTCTCTTCTCAAGAAGATCATCGA
GGCCGTTCGAGAGCTGGTGACAGATGCGAACCTCGACTGTTCCGAGTCGG
GCATCTCGATGCAGGCGATGGACTCGAGCCACGTCTCTCTCTGCGCGCTA
ATGATCCGCAGCGACGGCTTCCAGCACTACCGGTGCGACCGGAGTCTCTC
GCTGGGTCTCTCGACCGGCAGCATCTCCAAGATCCTCAAGTGTGCGGGGA
ACGACGACACGGTGACTCTGAAGGCGGAGGACACAGCAGACGCCCTCACC
ATCATGTTCGAGAGCCCAAAACAAGACCGCATCTCAGACTTCGAGCTCAA
GTTGATGGACATTGACAGCGAGCACCTCGGGATCCCAAAGACAGAGTACA
ACTGCATCATCCAGATGCCTTCGGCAGAGTTCGCACGAATCATGAGGGAC
TTGCAAGTGATCGGGGATACGTGCACCATCGCGTGCGATAAGGACGGGGT
AAACTTCTCCGTATCGGGGGACATGGGGAAGGGAAACATCATGGTCCGAA
ACAACACCTCGGTCGACAAGGAAGAGGACAAGGTGACGGTTACAATGGAG
GAGCCCGTCACTCTCAAGTTCGCGCTTCGGTACCTGGCGCTCTTCGCGAA
AGCAACCCCGTTGGGCCCCACGGTGACCATCTCCATGACACCAGACAACC
CGGTAGTAGTGGAGTACCCCATCGACACCTTCGGCTACGTACGATACTAC
CTCGCACCCAAGATCGACGAGGCTGACGAGTAG
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