mRNA_Ecto-sp13_S_contig1612.4470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI) HSP 1 Score: 558 bits (1439), Expect = 1.940e-196 Identity = 279/283 (98.59%), Postives = 281/283 (99.29%), Query Frame = 1
Query: 1 MFSRAAVEAARVARSVPLRTRVAAAASXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR 849
MFSRAA+EAARVARSVPLR RVAAAA XXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQM+KDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR
Sbjct: 1 MFSRAAMEAARVARSVPLRARVAAAAXXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR 283
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA) HSP 1 Score: 347 bits (891), Expect = 1.270e-113 Identity = 162/247 (65.59%), Postives = 197/247 (79.76%), Query Frame = 1
Query: 106 GGATVLC-DDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDG-PNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHD 840
G LC DD + ++ Y WP G L +FDHAAIRRG+QVYR+VCS+CHSI++++FRN +GV+H EA KK+A EFEV D PND+GEMFERPAK DR PGPY+NEA RAAN GA PPDLSL+ K RH G YV +LLTGY ++P GKDLLPGL+YNPYF G +I+MPPPLMDGQVEY DGTPATV+QMAKDV+ FLAWCAEPE DERK+ G+K + + LG+ ++ YYKR RW+P+KTRKITY +
Sbjct: 26 GAGAALCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHDEAGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 272
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A7R9YFS8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFS8_9STRA) HSP 1 Score: 331 bits (848), Expect = 2.870e-107 Identity = 154/243 (63.37%), Postives = 191/243 (78.60%), Query Frame = 1
Query: 106 GGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
GG DD + ++ W H+GF ++D+ A+RRG+QVY+EVCS+CHS++ +AFRNL+GV +E + KK+A +E+ DGPNDEGEMFERP K SD IPGP+ NE +ARAANNGAYPPDLSL+ K R G Y+ SLLTGY EAP GK +L GLHYNPYFPG +I+MP LMDGQVEY DGTPAT SQMAKDV TFLAWCAEPE DERK+ G++ +A+F+ ++ YYKRFR+SPLKTR+ITY
Sbjct: 20 GGVAFASDDHIPSLNPGWTHNGFFSSYDYKAVRRGFQVYKEVCSSCHSLERIAFRNLVGVCFTEDQAKKLAESYEIVDGPNDEGEMFERPGKLSDYIPGPHANEEAARAANNGAYPPDLSLITKARPGGVDYIFSLLTGYVEAPEGKTMLSGLHYNPYFPGGAIAMPKQLMDGQVEYEDGTPATESQMAKDVATFLAWCAEPEHDERKKAGVRILAALFVAFLITGYYKRFRYSPLKTRQITY 262
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA) HSP 1 Score: 330 bits (845), Expect = 1.270e-106 Identity = 151/236 (63.98%), Postives = 183/236 (77.54%), Query Frame = 1
Query: 127 DDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
+ VH Y W H+G L TFDH AIRRG+QVY+EVC+TCHS++ +AFRN +GV+HS E+K++ AE +VEDGPNDEGEMF+RP K +D++P PY NE + RAAN GAYPPDLSL++K RH G YV SLL GYTEAP GKD+LPGL+YNPYF G I+MPPPL DGQ++Y DGTPATVSQMAKDV FL WCAEPE DERK+ G K + L + +YKRFRWS KTRK++Y
Sbjct: 40 ESIVHPAHYHWDHAGLLDTFDHKAIRRGYQVYKEVCATCHSVEQIAFRNFVGVTHSTKEMKELTAEIDVEDGPNDEGEMFDRPGKLADKLPSPYANEEAGRAANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDGGLIAMPPPLDDGQLDYEDGTPATVSQMAKDVVIFLNWCAEPEHDERKKEGFKAVLCLAAALVFTGFYKRFRWSIYKTRKLSY 275
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A485LA40_9STRA (Aste57867_18449 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA) HSP 1 Score: 327 bits (839), Expect = 8.820e-106 Identity = 157/268 (58.58%), Postives = 195/268 (72.76%), Query Frame = 1
Query: 31 RVARSVPLRTRVAAAASXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
R+A+S L+ AAA + G T DD + Y + H G FD AA+RRG+QVY+EVCSTCHS+ + FR+L+GV+H+E E K +AA+ +V DGPNDEGEMFERP K SD +P PY N+ +A AANNGA PPDLSL+VK RH G Y+ +L+TGY +AP GKD+ GLHYNPYF G +I+MP PL DG+VEY DGTPATVSQMAKDV+ FL+W AEPE DERK+MGM+WC +F+ L+ YYKR RW+PLKTRKI Y
Sbjct: 4 RIAQSPALKKAAAAAGGAVVGGSVLTGVTSFSDDCIPAQHYGFEHQGPFTAFDAAAVRRGYQVYKEVCSTCHSVDKIHFRHLVGVTHTEDEAKALAADIDVVDGPNDEGEMFERPGKLSDPLPKPYANDEAASAANNGAIPPDLSLIVKARHAGADYLFALMTGYIDAPEGKDVGAGLHYNPYFGGGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIEY 271
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: W4G561_9STRA (Cytochrome c domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4G561_9STRA) HSP 1 Score: 322 bits (825), Expect = 1.120e-103 Identity = 153/268 (57.09%), Postives = 196/268 (73.13%), Query Frame = 1
Query: 31 RVARSVPLRTRVAAAASXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
R+ +S L+ AAA + G T DD++ + Y + H G L +FD+AA+RRG+QVY+EVC+TCHS+ + FR+L+GV+H+EAE K +AA+ +VEDGPND+GE FERP K SD +P PY N+ +A AANNGA PPDLSL+VK RH G Y+ +LLTGY EAP GK+L GL+YNPYF G +I+M L DG+V Y DGTPAT SQMAKDV+ FLAW AEPE DERK+MG++WC +F L+ YYKR RW+PLKTRKI+Y
Sbjct: 4 RIVQSPALKKAAAAAGTAAIGGSVFTGVTAFSDDSIPALHYGFEHDGPLTSFDYAAVRRGYQVYKEVCATCHSVDKIHFRHLVGVTHTEAEAKALAADIDVEDGPNDQGESFERPGKLSDPLPKPYANDEAAAAANNGAIPPDLSLIVKARHAGADYLFALLTGYVEAPEGKELGNGLYYNPYFGGGAIAMEKQLEDGKVTYEDGTPATASQMAKDVSVFLAWAAEPEHDERKKMGLQWCLGLFAAAVLTGYYKRLRWAPLKTRKISY 271
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A6G0WRS4_9STRA (Cytochrome c domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRS4_9STRA) HSP 1 Score: 322 bits (824), Expect = 1.590e-103 Identity = 156/268 (58.21%), Postives = 195/268 (72.76%), Query Frame = 1
Query: 31 RVARSVPLRTRVAAAASXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
R+A+S L+ AAA + G T DD++ + Y + H G +FD+AA+RRG+QVY+EVCSTCHSI + FR+L+GV+H+EAE KK+A + EV DGPNDEGEMFERP K SD +P PY N+ +A AANNGA PPDLSL+VK RH G Y+ +LLTGY E P GK+L GLHYNPYF G +I+M L DG+V Y DGTPAT SQMAKDV+ FL+W AEPE DERK+MGM+WC + + L+ YYKR RW+PLKTRKI+Y
Sbjct: 4 RIAQSPALKKAAAAAGGAAVSGCVLTGVTSFSDDSIPALHYGFEHQGPFTSFDYAAVRRGYQVYKEVCSTCHSIDKIHFRHLVGVTHTEAEAKKLAEDIEVVDGPNDEGEMFERPGKLSDPLPKPYANDEAAAAANNGAIPPDLSLIVKARHAGADYLFALLTGYYEPPEGKELGNGLHYNPYFGGGAIAMEKQLEDGKVTYEDGTPATASQMAKDVSIFLSWAAEPEHDERKKMGMQWCFGLLVAGLLTGYYKRMRWAPLKTRKISY 271
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A067C0J4_SAPPC (Cytochrome c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C0J4_SAPPC) HSP 1 Score: 318 bits (816), Expect = 2.440e-102 Identity = 157/268 (58.58%), Postives = 192/268 (71.64%), Query Frame = 1
Query: 31 RVARSVPLRTRVAAAASXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
RVA+S+ AA AS G T DD + + Y + H G L +FD+A++RRG+QVY+EVCSTCHS+ + FR+L+GV+H+E KK+AA+ EV DGPNDEGEMF+RP K SD P PY N+ +A AANNGA PPDLSL+VK RH G Y+ SL+TGY AP G ++ GLHYNPYF G I+M PL DGQVEY DGTPATVSQMAKDV FL+W AEPE DERK+MGM+WC +F+ + YYKR RW+PLKTRKITY
Sbjct: 4 RVAQSLRAHGPKAAGASLVAASVMTG-VTSFSDDCIPSPHYGFEHQGPLTSFDYASVRRGYQVYKEVCSTCHSLDKIHFRHLVGVTHTEDHAKKLAADIEVVDGPNDEGEMFDRPGKLSDPFPKPYANDEAAAAANNGAVPPDLSLMVKARHAGADYIFSLMTGYVPAPEGNEVGAGLHYNPYFSGGMIAMAQPLNDGQVEYEDGTPATVSQMAKDVACFLSWAAEPEHDERKKMGMQWCFGLFVTALFTGYYKRMRWAPLKTRKITY 270
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A4D9D0D3_9STRA (Cytochrome c domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0D3_9STRA) HSP 1 Score: 318 bits (815), Expect = 4.850e-102 Identity = 148/243 (60.91%), Postives = 186/243 (76.54%), Query Frame = 1
Query: 106 GGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 834
GG V D V +++Y W H G L ++D+ A+RRG+QVYREVC++CH+++ FRNL+GV+H+E EVKKIA ++V DGPN EGEMFERP K SD+IPGPY N+ +ARAANNGAYPPDLSL+ K R G Y+ +LLTGY + P GK +L GL+YNPYFPG +I+M L DGQ+EY DGTPAT SQM+KDV TFLAW AEPE D RK+ G++W A+ + LAL+ +YKRFRWSPLKT K Y
Sbjct: 38 GGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHTEEEVKKIAESYDVVDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARPGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVATFLAWAAEPEHDYRKKAGVQWIGALLVALALTGFYKRFRWSPLKTAKFHY 280
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Match: A0A176WEB2_MARPO (Cytochrome c domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WEB2_MARPO) HSP 1 Score: 316 bits (810), Expect = 9.140e-101 Identity = 148/246 (60.16%), Postives = 186/246 (75.61%), Query Frame = 1
Query: 118 VLCDDAVHTV---EYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDIN 846
V D+A H + +Y WPH+G + ++DHA+IRRG QVY++VC+ CHS+ VA+R+LIGV+++E EVK +AAE EVEDGPNDEGEMF+RP KPSD PY NE +AR AN GAYPPDLSL+ K RH G +YV +LLTGY E P G + GLHYNPYFPG +I+MP L DG VEY DGT AT SQMAKDV TFL+W AEPEMDERK MG KW A+ L L ++YYKR++W+P+K+R++ +N
Sbjct: 73 VYADEAEHGLASPDYPWPHNGIMSSYDHASIRRGHQVYQQVCAACHSMSLVAYRDLIGVAYTEDEVKCLAAEIEVEDGPNDEGEMFQRPGKPSDHFQKPYANENAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYREPPAGVSVREGLHYNPYFPGGAIAMPKMLTDGGVEYEDGTAATESQMAKDVVTFLSWAAEPEMDERKLMGFKWIFALSLALLQAVYYKRWKWAPIKSRRVVSDIVN 318 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1612.4470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1612.4470.1 >prot_Ecto-sp13_S_contig1612.4470.1 ID=prot_Ecto-sp13_S_contig1612.4470.1|Name=mRNA_Ecto-sp13_S_contig1612.4470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=284bp MFSRAAVEAARVARSVPLRTRVAAAASAAAGAAAVGGATVLCDDAVHTVEback to top mRNA from alignment at Ecto-sp13_S_contig1612:1121..7741+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1612.4470.1 ID=mRNA_Ecto-sp13_S_contig1612.4470.1|Name=mRNA_Ecto-sp13_S_contig1612.4470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1612:1121..7741+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1612:1121..7741+ >mRNA_Ecto-sp13_S_contig1612.4470.1 ID=mRNA_Ecto-sp13_S_contig1612.4470.1|Name=mRNA_Ecto-sp13_S_contig1612.4470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1612:1121..7741+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |