mRNA_Ecto-sp13_S_contig16118.4469.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16118.4469.1
Unique NamemRNA_Ecto-sp13_S_contig16118.4469.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: D7FIT4_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.120e-41
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD
Sbjct:  215 PPRWND--QVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 292
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A6H5JKE0_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.280e-34
Identity = 68/80 (85.00%), Postives = 68/80 (85.00%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMD       FQAFAITLSSFDSKIACD
Sbjct:  158 PPRWND--QVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMD-------FQAFAITLSSFDSKIACD 228
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: F0XZM0_AURAN (Tub domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZM0_AURAN)

HSP 1 Score: 124 bits (310), Expect = 4.670e-33
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGAYVLNF GRVTMASVKNFQLV  +D D I+LQFGRV ++EFTMDFQ+P++PFQAFAITLSSFDSKIACD
Sbjct:  179 PPRWND--QVGAYVLNFNGRVTMASVKNFQLVQPDDQDAILLQFGRVGKDEFTMDFQWPMTPFQAFAITLSSFDSKIACD 256
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A812VY07_SYMMI (TULP11 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VY07_SYMMI)

HSP 1 Score: 118 bits (296), Expect = 6.930e-33
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGAYVLNF GRVTMASVKNFQLV  ++ + +ILQFGRV +++FTMD Q+P+SPFQAFAITLSSFDSKIACD
Sbjct:   16 PPRWNE--QVGAYVLNFSGRVTMASVKNFQLVDPDEQNAVILQFGRVGKDQFTMDMQWPMSPFQAFAITLSSFDSKIACD 93
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A7S2VW98_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VW98_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.940e-32
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGAYVLNF GRVTMASVKNFQLV   D D IILQFGRVA++EFT DFQ+PISPFQAFAITLSSFDSKIACD
Sbjct:  321 PPRWND--QVGAYVLNFNGRVTMASVKNFQLVDQLDHDNIILQFGRVAKDEFTCDFQWPISPFQAFAITLSSFDSKIACD 398
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A835YWG7_9STRA (Tub domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.260e-32
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QV AYVLNF GRVTMASVKNFQLV+ +D + ++LQFGRVA++EFTMDFQ+PI+P QAFAITLSSFDSKIACD
Sbjct:  185 PPRWND--QVSAYVLNFNGRVTMASVKNFQLVTPDDHETVVLQFGRVAKDEFTMDFQWPITPLQAFAITLSSFDSKIACD 262
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A812T167_SYMMI (Tulp1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T167_SYMMI)

HSP 1 Score: 119 bits (299), Expect = 1.680e-31
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGAYVLNF GRVTMASVKNFQLV  E+ + +ILQFGRV +++FTMD Q+P+SPFQAFAITLSSFDSKIACD
Sbjct:  170 PPRWNE--QVGAYVLNFSGRVTMASVKNFQLVDPEEQNAVILQFGRVGKDQFTMDMQWPMSPFQAFAITLSSFDSKIACD 247
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A7S3Y0Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0Z9_HETAK)

HSP 1 Score: 119 bits (297), Expect = 4.140e-31
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   +VGAYVLNF GRVTMASVKNFQL+  E  + ++LQFGRVA+++FTMDFQ+P+SPFQAFAITLSSFDSKIACD
Sbjct:  179 PPRWND--EVGAYVLNFNGRVTMASVKNFQLIEGERPEDVLLQFGRVAKDKFTMDFQWPLSPFQAFAITLSSFDSKIACD 256
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A7S2SNS1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNS1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.100e-31
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   QVGA+VLNF GRVTMASVKNFQL++ ED +R++LQFGRVA++EFTMDFQ+P +PFQAFA+TLSSFDSKIACD
Sbjct:  696 PPRWND--QVGAFVLNFNGRVTMASVKNFQLITHEDQERVLLQFGRVAKDEFTMDFQWPFTPFQAFAVTLSSFDSKIACD 773
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BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Match: A0A7S2XZ24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ24_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.330e-31
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 3 
Query:   24 PPHRNSPAQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSKIACD 263
            PP  N   +VGAYVLNF GRVTMASVKNFQL+  ++ + ++LQFGRVA+++FTMDFQ+P+SPFQAFAITLSSFDSKIACD
Sbjct:  216 PPRWND--EVGAYVLNFNGRVTMASVKNFQLIEQDNPECVLLQFGRVAKDKFTMDFQWPLSPFQAFAITLSSFDSKIACD 293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16118.4469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIT4_ECTSI1.120e-4193.75Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JKE0_9PHAE8.280e-3485.00Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
F0XZM0_AURAN4.670e-3377.50Tub domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A812VY07_SYMMI6.930e-3373.75TULP11 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S2VW98_9STRA1.940e-3281.25Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A835YWG7_9STRA4.260e-3275.00Tub domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A812T167_SYMMI1.680e-3175.00Tulp1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3Y0Z9_HETAK4.140e-3173.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SNS1_9STRA5.100e-3175.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XZ24_9STRA9.330e-3172.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16118contigEcto-sp13_S_contig16118:2324..2935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score116.7
Seed ortholog evalue3.7e-24
Seed eggNOG ortholog2880.D7FIT4
Model size292
KEGG koko:K19600
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsKOG2502@1,KOG2502@2759
Cds size177
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.8744862-UTR-Ecto-sp13_S_contig16118:2323..24121681462850.8744862-UTR-Ecto-sp13_S_contig16118:2323..2412Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16118 2324..2412 +
1681462850.904716-UTR-Ecto-sp13_S_contig16118:2909..29351681462850.904716-UTR-Ecto-sp13_S_contig16118:2909..2935Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16118 2910..2935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.8842278-CDS-Ecto-sp13_S_contig16118:2412..25171681462850.8842278-CDS-Ecto-sp13_S_contig16118:2412..2517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16118 2413..2517 +
1681462850.8966625-CDS-Ecto-sp13_S_contig16118:2837..29091681462850.8966625-CDS-Ecto-sp13_S_contig16118:2837..2909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16118 2838..2909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16118.4469.1prot_Ecto-sp13_S_contig16118.4469.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16118 2413..2909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16118.4469.1

>prot_Ecto-sp13_S_contig16118.4469.1 ID=prot_Ecto-sp13_S_contig16118.4469.1|Name=mRNA_Ecto-sp13_S_contig16118.4469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MASVKNFQLVSTEDFDRIILQFGRVAREEFTMDFQYPISPFQAFAITLSS
FDSKIACD*
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mRNA from alignment at Ecto-sp13_S_contig16118:2324..2935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16118.4469.1 ID=mRNA_Ecto-sp13_S_contig16118.4469.1|Name=mRNA_Ecto-sp13_S_contig16118.4469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16118:2324..2935+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTAGACAACCCAACGCTTTCCCACCCCATCGCAACTCGCCGGCGCAG
GTGGGAGCTTACGTGCTGAACTTCTACGGGAGGGTGACCATGGCGAGCGT
GAAGAACTTCCAGCTCGTTTCCACCGAAGATTTCGACCGCATCATTCTGC
AGTTCGGCAGGGTGGCTCGAGAGGAGTTCACCATGGACTTTCAGGTGAGC
AGCCCATCGTAGGAAAGTCAGACGAGATGGATGTTAGGCTCTGGCCCTAC
AGACACGGATGGAGTACTTGGACCGTGTTTTTTGGCCCCAGCGTATCCCT
TCCGACCCATCCCTCCCCCGACGCATACGCCTCACACATCGGTAAGAGGT
GAAATCGGGCTGACGAAAGTTTGAAGTCGTGACAGACTGGCCGTGGGCAA
CGTTTCGTTTGTTTACTCGCCTATGTGCTCTCCGTAAGCATCTCTTTCAA
TCTCAACGTCATGTCCGTGCCTCTGCCAACTGTTCGACTGCCTCTCGCTT
TGGTCCTCTTGTAGTACCCCATTTCACCGTTCCAGGCGTTCGCGATCACC
CTTAGCTCCTTCGACTCCAAGATAGCGTGCGACTAGGCCAAATACGACAG
GGAAAAGCCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16118:2324..2935+

>mRNA_Ecto-sp13_S_contig16118.4469.1 ID=mRNA_Ecto-sp13_S_contig16118.4469.1|Name=mRNA_Ecto-sp13_S_contig16118.4469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16118:2324..2935+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGCGTGAAGAACTTCCAGCTCGTTTCCACCGAAGATTTCGACCG
CATCATTCTGCAGTTCGGCAGGGTGGCTCGAGAGGAGTTCACCATGGACT
TTCAGTACCCCATTTCACCGTTCCAGGCGTTCGCGATCACCCTTAGCTCC
TTCGACTCCAAGATAGCGTGCGACTAG
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