mRNA_Ecto-sp13_S_contig16117.4468.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16117.4468.1
Unique NamemRNA_Ecto-sp13_S_contig16117.4468.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16117.4468.1 vs. uniprot
Match: A0A6H5KLH0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLH0_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.860e-87
Identity = 124/131 (94.66%), Postives = 126/131 (96.18%), Query Frame = 1 
Query:    1 QHCAFHMEAFRVHAKDQTVAAGAPTPTTFMFVFHGGQPNQAALEVTHMPPCPTPARGQAGDGGGEEPDPTSEGEGRVTMALGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS 393
            QHCAFHMEAFRVH K+QTVAAGAPTPTTFMFVFHGGQPNQA LEVTH PPC TPARG+AGDGGGEEPDPTSEGEGRVTM LGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS
Sbjct:  123 QHCAFHMEAFRVHTKNQTVAAGAPTPTTFMFVFHGGQPNQATLEVTHTPPCLTPARGKAGDGGGEEPDPTSEGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16117.4468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLH0_9PHAE2.860e-8794.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16117contigEcto-sp13_S_contig16117:248..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size396
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001460.1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.8190107-UTR-Ecto-sp13_S_contig16117:247..2651681462850.8190107-UTR-Ecto-sp13_S_contig16117:247..265Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16117 248..265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.8313496-CDS-Ecto-sp13_S_contig16117:265..5801681462850.8313496-CDS-Ecto-sp13_S_contig16117:265..580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16117 266..580 +
1681462850.8415914-CDS-Ecto-sp13_S_contig16117:1193..12561681462850.8415914-CDS-Ecto-sp13_S_contig16117:1193..1256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16117 1194..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16117.4468.1prot_Ecto-sp13_S_contig16117.4468.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16117 266..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16117.4468.1

>prot_Ecto-sp13_S_contig16117.4468.1 ID=prot_Ecto-sp13_S_contig16117.4468.1|Name=mRNA_Ecto-sp13_S_contig16117.4468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MEAFRVHAKDQTVAAGAPTPTTFMFVFHGGQPNQAALEVTHMPPCPTPAR
GQAGDGGGEEPDPTSEGEGRVTMALGGNNVPHRPGEPYSCYIRQVGHVTF
NPRKQARGYLYILSQEGRTLFTSLS*
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mRNA from alignment at Ecto-sp13_S_contig16117:248..1256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16117.4468.1 ID=mRNA_Ecto-sp13_S_contig16117.4468.1|Name=mRNA_Ecto-sp13_S_contig16117.4468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1009bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16117:248..1256+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACTGCGCGTTTCACATGGAGGCCTTCCGGGTGCACGCCAAGGACCA
GACGGTAGCAGCAGGAGCTCCGACACCGACGACCTTCATGTTCGTGTTCC
ACGGGGGACAGCCCAACCAAGCGGCCCTCGAGGTCACGCACATGCCGCCT
TGCCCGACCCCCGCGAGGGGGCAGGCGGGGGACGGCGGAGGAGAGGAGCC
AGACCCTACCAGCGAAGGAGAGGGTCGCGTCACGATGGCCCTGGGCGGGA
ACAACGTCCCCCACCGCCCGGGTGAGCCGTACTCGTGCTACATCCGCCAG
GTCGGACACGTCACCTTCAACCCACGCAAACAGGTGAGGGGGGGGGGGGG
GGGATCGCTCCTTTTGCTGCGCAGCTCGAGTGACTAAAAACTAGCCACCA
CGTGCTCTGTTGTAGGGGGCGGGGGGGGGGGTCGTCAAGTGCCCGCGCGT
AGTGGTGTCCACAACGGGAAAATGCTACATTGTTCGGTAGATTGGCTTTC
CCTAGCCCACAAACTACATGCTGGTATTTCACGCCCCTTAATGAACAATA
AGCGTGCCGTCGTTCCTCCAAAAACACCAAAGCACGAACACAGCAGCGTG
GCGCCGTGAAAATTCTTCCGATTTGCCTGACCTGCGCCGTTTGATCCTTG
TATCGAGTTCGGTGAGGAGCCACGTCTGCAATTGGCACCACCATTCACGT
CATTTCACCTTCCTCTGTCGGTAGTGCTGGCTCTGCATGCTAGGCTGGTC
GAGTGGCCTACTGCTGTAGCGATTGAGGGAAAAAAAAAAAAAATTAGGTA
TTGACAACATCAAGTCTTCTATTCAGTTGCGGATGAAATGTCAATGATGT
ATTTTCAAACGTTGCTGTGGTTAACAACCTACGAAAAACATTTCTGAGCT
GATTCTAATTTTTCTTGAACATCCCTCCACCCCATGAACCCCTCAGGCAC
GTGGTTACCTGTACATCCTTAGCCAAGAAGGACGTACTCTCTTCACCTCG
CTCAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16117:248..1256+

>mRNA_Ecto-sp13_S_contig16117.4468.1 ID=mRNA_Ecto-sp13_S_contig16117.4468.1|Name=mRNA_Ecto-sp13_S_contig16117.4468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16117:248..1256+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCCTTCCGGGTGCACGCCAAGGACCAGACGGTAGCAGCAGGAGC
TCCGACACCGACGACCTTCATGTTCGTGTTCCACGGGGGACAGCCCAACC
AAGCGGCCCTCGAGGTCACGCACATGCCGCCTTGCCCGACCCCCGCGAGG
GGGCAGGCGGGGGACGGCGGAGGAGAGGAGCCAGACCCTACCAGCGAAGG
AGAGGGTCGCGTCACGATGGCCCTGGGCGGGAACAACGTCCCCCACCGCC
CGGGTGAGCCGTACTCGTGCTACATCCGCCAGGTCGGACACGTCACCTTC
AACCCACGCAAACAGGCACGTGGTTACCTGTACATCCTTAGCCAAGAAGG
ACGTACTCTCTTCACCTCGCTCAGCTGA
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