mRNA_Ecto-sp13_S_contig16112.4466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16112.4466.1
Unique NamemRNA_Ecto-sp13_S_contig16112.4466.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A6H5KRC5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.320e-16
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            MCQVWNCMEIEYLPVYVPTAEDR+NPTLFAQHVQ
Sbjct:  337 MCQVWNCMEIEYLPVYVPTAEDRENPTLFAQHVQ 370
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: D7FLI2_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.900e-15
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            MCQVWNCMEIEYLPVYVPTAEDRDN TLFAQHVQ
Sbjct:  335 MCQVWNCMEIEYLPVYVPTAEDRDNSTLFAQHVQ 368
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A1X7V500_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V500_AMPQE)

HSP 1 Score: 54.7 bits (130), Expect = 1.150e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQ  N +EIEYLPVY P+ E++DNPTLFA+HVQ
Sbjct:  258 VCQFDNSVEIEYLPVYHPSEEEKDNPTLFAEHVQ 291
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A1A8G3M5_9TELE (Lysophosphatidylcholine acyltransferase 1 (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8G3M5_9TELE)

HSP 1 Score: 51.6 bits (122), Expect = 2.060e-7
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQH 96
            +CQ+ N MEIEYLPVY P+ E++DNPTLFA +
Sbjct:   75 LCQLHNSMEIEYLPVYYPSDEEKDNPTLFASN 106
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A1A8BLL0_9TELE (Lysophosphatidylcholine acyltransferase 1 n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8BLL0_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 2.850e-7
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQ+ N MEIEYLPVY P+ E++DNPTLFA +V+
Sbjct:   59 LCQLHNSMEIEYLPVYYPSDEEKDNPTLFASNVR 92
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A1A7ZHM2_NOTFU (Lysophosphatidylcholine acyltransferase 1 (Fragment) n=5 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZHM2_NOTFU)

HSP 1 Score: 53.5 bits (127), Expect = 2.940e-7
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQ+ N MEIEYLPVY P+ E++DNPTLFA +V+
Sbjct:  262 LCQLHNSMEIEYLPVYYPSDEEKDNPTLFASNVR 295
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A8C6WE12_9GOBI (Lysophosphatidylcholine acyltransferase 1 n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WE12_9GOBI)

HSP 1 Score: 53.1 bits (126), Expect = 4.030e-7
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQV N MEIEYLPVY P+ E+R+NP LFA +V+
Sbjct:  245 LCQVHNSMEIEYLPVYTPSEEERENPALFANNVR 278
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: Q4TCD4_TETNG (Chromosome undetermined SCAF6979, whole genome shotgun sequence (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4TCD4_TETNG)

HSP 1 Score: 51.6 bits (122), Expect = 1.000e-6
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQ+ N MEIEYLPVY P+ E+++NP+LFA +V+
Sbjct:    6 LCQLHNAMEIEYLPVYTPSEEEKENPSLFASNVR 39
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A674MAY0_TAKRU (PlsC domain-containing protein n=5 Tax=Takifugu TaxID=31032 RepID=A0A674MAY0_TAKRU)

HSP 1 Score: 51.6 bits (122), Expect = 1.410e-6
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQ+ N MEIEYLPVY P+ E+++NP+LFA +V+
Sbjct:  233 LCQLHNAMEIEYLPVYTPSEEEKENPSLFANNVR 266
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BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Match: A0A3P8VVF9_CYNSE (Lysophosphatidylcholine acyltransferase 1-like n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VVF9_CYNSE)

HSP 1 Score: 50.8 bits (120), Expect = 2.640e-6
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ 102
            +CQ  N MEIEYLPVY P+ E+R+NP LFA +V+
Sbjct:  245 LCQPHNAMEIEYLPVYTPSDEERENPALFANNVR 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16112.4466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRC5_9PHAE8.320e-1697.06EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FLI2_ECTSI2.900e-1597.061-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A1X7V500_AMPQE1.150e-767.65Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A1A8G3M5_9TELE2.060e-765.63Lysophosphatidylcholine acyltransferase 1 (Fragmen... [more]
A0A1A8BLL0_9TELE2.850e-764.71Lysophosphatidylcholine acyltransferase 1 n=1 Tax=... [more]
A0A1A7ZHM2_NOTFU2.940e-764.71Lysophosphatidylcholine acyltransferase 1 (Fragmen... [more]
A0A8C6WE12_9GOBI4.030e-764.71Lysophosphatidylcholine acyltransferase 1 n=1 Tax=... [more]
Q4TCD4_TETNG1.000e-658.82Chromosome undetermined SCAF6979, whole genome sho... [more]
A0A674MAY0_TAKRU1.410e-658.82PlsC domain-containing protein n=5 Tax=Takifugu Ta... [more]
A0A3P8VVF9_CYNSE2.640e-661.76Lysophosphatidylcholine acyltransferase 1-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16112contigEcto-sp13_S_contig16112:3475..3576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score77.0
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FLI2
Preferred nameLPCAT2
Model size102
KEGG rclassRC00004,RC00037
KEGG koko:K13510,ko:K13512
KEGG ReactionR01318,R03437,R03438,R04413,R04480,R09035,R09036
KEGG Pathwayko00564,ko00565,ko01100,map00564,map00565,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0001654,GO:0001775,GO:0001894,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005811,GO:0005886,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006656,GO:0006658,GO:0006663,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010563,GO:0010604,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016407,GO:0016411,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019216,GO:0019220,GO:0019222,GO:0019637,GO:0030141,GO:0030258,GO:0030659,GO:0030667,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0035577,GO:0036148,GO:0036150,GO:0036151,GO:0036152,GO:0036230,GO:0042119,GO:0042171,GO:0042175,GO:0042176,GO:0042582,GO:0042592,GO:0043010,GO:0043129,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045055,GO:0045321,GO:0045732,GO:0045833,GO:0045936,GO:0046469,GO:0046470,GO:0046471,GO:0046473,GO:0046474,GO:0046486,GO:0046890,GO:0046903,GO:0047144,GO:0047159,GO:0047184,GO:0047191,GO:0047192,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048871,GO:0048875,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0060041,GO:0060249,GO:0060255,GO:0061024,GO:0065007,GO:0065008,GO:0071071,GO:0071072,GO:0071617,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090407,GO:0097164,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903726,GO:2001245,GO:2001246
Exons1
EggNOG free text desc.1-alkylglycerophosphocholine O-acetyltransferase activity
EggNOG OGsCOG0204@1,KOG4666@2759
EC2.3.1.23,2.3.1.67
Cds size102
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.6967278-CDS-Ecto-sp13_S_contig16112:3474..35761681462850.6967278-CDS-Ecto-sp13_S_contig16112:3474..3576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16112 3475..3576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16112.4466.1prot_Ecto-sp13_S_contig16112.4466.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16112 3475..3576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16112.4466.1

>prot_Ecto-sp13_S_contig16112.4466.1 ID=prot_Ecto-sp13_S_contig16112.4466.1|Name=mRNA_Ecto-sp13_S_contig16112.4466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MCQVWNCMEIEYLPVYVPTAEDRDNPTLFAQHVQ
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mRNA from alignment at Ecto-sp13_S_contig16112:3475..3576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16112.4466.1 ID=mRNA_Ecto-sp13_S_contig16112.4466.1|Name=mRNA_Ecto-sp13_S_contig16112.4466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16112:3475..3576- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCAGGTCTGGAACTGCATGGAGATCGAATATCTTCCTGTTTACGT
GCCGACGGCGGAAGACAGGGACAATCCCACCCTCTTCGCTCAGCACGTTC
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16112:3475..3576-

>mRNA_Ecto-sp13_S_contig16112.4466.1 ID=mRNA_Ecto-sp13_S_contig16112.4466.1|Name=mRNA_Ecto-sp13_S_contig16112.4466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16112:3475..3576- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCAGGTCTGGAACTGCATGGAGATCGAATATCTTCCTGTTTACGT
GCCGACGGCGGAAGACAGGGACAATCCCACCCTCTTCGCTCAGCACGTTC
AG
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