mRNA_Ecto-sp13_S_contig1611.4464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1611.4464.1
Unique NamemRNA_Ecto-sp13_S_contig1611.4464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1611.4464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1611contigEcto-sp13_S_contig1611:10435..11939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size463
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.598449-CDS-Ecto-sp13_S_contig1611:10435..107481681462850.598449-CDS-Ecto-sp13_S_contig1611:10435..10748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1611 10436..10748 -
1681462850.610059-CDS-Ecto-sp13_S_contig1611:11790..119391681462850.610059-CDS-Ecto-sp13_S_contig1611:11790..11939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1611 11791..11939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1611.4464.1prot_Ecto-sp13_S_contig1611.4464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1611 10436..11939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1611.4464.1

>prot_Ecto-sp13_S_contig1611.4464.1 ID=prot_Ecto-sp13_S_contig1611.4464.1|Name=mRNA_Ecto-sp13_S_contig1611.4464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
RSPRGTNKPGDVAEDSAAAAEVALPFFGSLLFFSKFGRGSTLAVRCWSCR
ISKTKTTATKIKPRKYSSPTPVAYCVVAKYTTQQNMSYYGSVSGIHGNRG
GNYGAGPPPTHGGGVPHGGASGYYGPPPPGGAGGVYGPADHQNYPPNQYQ
AQGK
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mRNA from alignment at Ecto-sp13_S_contig1611:10435..11939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1611.4464.1 ID=mRNA_Ecto-sp13_S_contig1611.4464.1|Name=mRNA_Ecto-sp13_S_contig1611.4464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1611:10435..11939- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCGCCCAGGGGCACCAACAAGCCCGGCGACGTGGCGGAAGACAGCGC
TGCTGCTGCTGAGGTGGCACTTCCTTTTTTTGGCTCTCTCCTCTTTTTTT
CGAAATTCGGACGGGGAAGTACGCTGGCTGTGCGTTGTTGGTCCTGCAGG
TGAGGACAGCAGGCTTGAAGCTTGAAGTGTCTCGCAGCCCTGCTGGCTGA
GGTGGGGTGCCGTTGGGCGCGTCTGCAGTTGCGGGTTGTCGCGCGGCTCG
GCGTTTAGAGCATCGGTTGATGAAAGACGCGTGCGTGGTGGCCTATGTCC
CACCGCCCGCCGTGGTGTGGCTTTCGTTTTCTGCCACTGGTGCCGATACA
CAGCGTCAGCAGCCAAAGCTAGTAAGGGCTGCAGCTCGCGCTCTCAATAT
TATCGCGCCACGACGCGGGCTGTGTTCCTGTTCTTGGAAAGAGGAAGAGC
TCGCCGATGATAGCCAGCAGCTCTAGCCAGAAACTAGCGCGGTTCGGGGA
TCCGTGCGTCGCAAACTCTGTTGTGGCAGCCTCTAAAAAGATACACAGGT
GTGGGGTGCAAATTCCACTGCCGCCGCTGACCAGCTAACGGCAGTTTTAA
TGCCGTCTTTTATTTTGTGGTGCGTGCTGCTGTCGATTCCAGTGACTAAA
TTCTCGGGTGCGAGCAGCACCAGCGAGAGGCTCCAGCGATGGGAAAGGTG
GAACCACGCTGATCAACCTCTGGTGGTTGCCAAGTGTAGCCAGCCCTTTC
TCCCTACACAAAGAGAAAAACTCGAAGCGACGTTGTCGCGACAGATCTAG
CAAAATTTCACGCCGCTGCTGGTCGCTGCCAACGCACCATAATATCTGAA
GAGGCCGCGCGTGTACGAAAATCGCGGATCCTTCAACGTCTCTGAACTCT
TCTGTGTCACGCCGTCCCACCAAACTCCACATTTCGCTGTGTAACGTATG
CATACCCCCCTAGCATAATGGTCAAGGTGCTGGTTTGTTGTTTCAAATTC
ACCTGCTGAGAATGCGTGCGCTACACCCATGGCAAGTAGAAATACGCTCT
CTGCTGACGACGATTCTGCTCTACCCCTCTTACTATTTTGCAGCTGTCCT
GTTTCTCACATACCCCCCTCCGCTCTCTTGCGTACACAAACCAAACCGGC
GTCCGCGTTCGCGCTGCCTCGCTGCGTATCTTCTCGCCCAGGATCAGCAA
GACCAAGACCACCGCCACGAAAATAAAGCCACGAAAATATTCTTCTCCGA
CGCCGGTAGCCTACTGCGTGGTCGCTAAATACACAACCCAGCAAAATATG
TCGTATTACGGGTCGGTGTCTGGCATCCACGGCAACCGGGGCGGGAACTA
CGGGGCGGGACCGCCGCCCACCCATGGGGGGGGGGTTCCGCATGGGGGAG
CGTCGGGATACTATGGACCTCCTCCGCCCGGCGGCGCCGGAGGGGTCTAC
GGGCCGGCGGATCATCAAAATTACCCTCCGAATCAGTACCAAGCACAGGG
CAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1611:10435..11939-

>mRNA_Ecto-sp13_S_contig1611.4464.1 ID=mRNA_Ecto-sp13_S_contig1611.4464.1|Name=mRNA_Ecto-sp13_S_contig1611.4464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1611:10435..11939- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCGCCCAGGGGCACCAACAAGCCCGGCGACGTGGCGGAAGACAGCGC
TGCTGCTGCTGAGGTGGCACTTCCTTTTTTTGGCTCTCTCCTCTTTTTTT
CGAAATTCGGACGGGGAAGTACGCTGGCTGTGCGTTGTTGGTCCTGCAGG
ATCAGCAAGACCAAGACCACCGCCACGAAAATAAAGCCACGAAAATATTC
TTCTCCGACGCCGGTAGCCTACTGCGTGGTCGCTAAATACACAACCCAGC
AAAATATGTCGTATTACGGGTCGGTGTCTGGCATCCACGGCAACCGGGGC
GGGAACTACGGGGCGGGACCGCCGCCCACCCATGGGGGGGGGGTTCCGCA
TGGGGGAGCGTCGGGATACTATGGACCTCCTCCGCCCGGCGGCGCCGGAG
GGGTCTACGGGCCGGCGGATCATCAAAATTACCCTCCGAATCAGTACCAA
GCACAGGGCAAG
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