mRNA_Ecto-sp13_S_contig16108.4463.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: D7G7H5_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H5_ECTSI) HSP 1 Score: 241 bits (615), Expect = 8.870e-74 Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 2
Query: 578 KKSEGLPRAKEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQDARATFTSLGNAHPDCSRLCADFYPGWEVPGGVAIVRMFRITVPESVCQKHLNYVRRLGNVVQRFHGSSCRSSCNCVLDPK 1036
KKS+GL KEQ+IR GLA LVE DL+KQVATL Q EQ DEIRSL+ QLQGLEVN VPL GGLITVLSSQ A ATFTSLGNAHPDCSRL ADFYPGWE PGGVAIVRMFRITVP V QKHLNY RRLGNVVQRFHG+SCRS+CN +LDPK
Sbjct: 83 KKSQGLSHTKEQKIRSGLARLVENDLQKQVATLAQLRREQVDEIRSLSIQLQGLEVNRVPLIGGLITVLSSQGASATFTSLGNAHPDCSRLRADFYPGWEAPGGVAIVRMFRITVPAGVRQKHLNYARRLGNVVQRFHGTSCRSACNFILDPK 235
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: A0A6H5JJM5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM5_9PHAE) HSP 1 Score: 231 bits (589), Expect = 8.320e-70 Identity = 139/183 (75.96%), Postives = 149/183 (81.42%), Query Frame = 1
Query: 1 MKAWQRITHWRRRSSKWSKSKTPPXXXXXXXXXXXXXPAQAAAAHVILLVGELEDILPRVEQVQPNGNGEEEETKVDPSRQPYGPKESTGEDPVVERLLRKQEELVHTGNNE-MIEELHASLLKLHDNLRRSEEMAAARLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVEI 546
MKAWQR+THWR SSKWS +KTPP XXXX A+AAAAH+IL GEL ILPRV QVQP+GNGEEE+TKVDPSRQ YGPKES GEDPV ERLLRK E LV TGN E MIE LH SLLKLHD RRSEEMAAARLKAVEDEKAA EVA REE+AKT MQEKTM FLR+TNI+AQSVE+
Sbjct: 1 MKAWQRMTHWRWCSSKWSTAKTPPQEGSAQAEEXXXXXAKAAAAHMILFAGELGGILPRVGQVQPDGNGEEEKTKVDPSRQSYGPKESPGEDPVDERLLRKHEGLVRTGNEEEMIEGLHVSLLKLHDIPRRSEEMAAARLKAVEDEKAAFEVAKREEKAKTTMQEKTMHFLRRTNIQAQSVEM 183
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: D7G7H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7H6_ECTSI) HSP 1 Score: 172 bits (435), Expect = 6.780e-46 Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 2
Query: 587 EGLPRAKEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQDARATFTSLGNAHPDCSRLCADFYPGWEVPGGVAIVRMFRITVPESVCQKHLNYVRRLGNVVQRFHGSSCRSSCNCVLDPK 1036
EG + KE+++R GLA LVEKDLRKQVATL QS +QA+EIR L QLQ L+ NG P ++TV S+Q A AT ++LG++HPDC RL ADF GW G+AI R+FRITVP V + H YVR GNVVQRFHG+SCRS+CN ++DPK
Sbjct: 199 EGRFQTKEEKVRSGLARLVEKDLRKQVATLEQSTGQQANEIRVLLAQLQVLQRNGEPHIDSVLTVGSTQGANATLSALGDSHPDCPRLRADFLSGWRTLTGLAIERIFRITVPAGVGETHAGYVRSHGNVVQRFHGTSCRSTCNFIIDPK 348
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: D7G7H4_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H4_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.570e-40 Identity = 112/207 (54.11%), Postives = 134/207 (64.73%), Query Frame = 1
Query: 1 MKAWQRITHWRRRSSKWSKSKTPPXXXXXXXXXXXXXPAQAAAAHVILLVGELEDILPRVEQVQPNGNGEEEETKVDPSRQPYGPKEST------GEDPVVERLLRKQEELVHTGNNEMIEELHASLLKLHDNLRRSEEMAAARLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVEIELRNQVETLQKEERRAAPG 603
MKA R+T WR RSS SKS T P P QA A L V L+ P V Q++PNG+ E EETKVD YGP + GED ERLL KQEELV + E I+EL ASLL+LH++ RRSEE+AAARLKAVE EKAALEVA + ERAKTAMQ+KTM FLRQ +IEAQSVE +LRN+++TL+ E+ + G
Sbjct: 1 MKALHRVTRWRWRSSTSSKSNTSPEE-----------PEQAKDA---LAVRSLDGNRPPVGQLEPNGHQEGEETKVDAPGHSYGPNQLIAEDQRHGEDNADERLLSKQEELVRNSDKEEIQELCASLLQLHNDRRRSEEIAAARLKAVEGEKAALEVAIQAERAKTAMQQKTMHFLRQISIEAQSVETQLRNELQTLKNEKSQGTNG 193
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: D7FLK2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK2_ECTSI) HSP 1 Score: 146 bits (369), Expect = 2.020e-36 Identity = 89/192 (46.35%), Postives = 106/192 (55.21%), Query Frame = 2
Query: 587 EGLPRAKEQRIRRGLALLVEKDLRKQVATLTQSHSE------------------------------------------QADEIRSLATQLQGLEVNGVPLTGGLITVLSSQDARATFTSLGNAHPDCSRLCADFYPGWEVPGGVAIVRMFRITVPESVCQKHLNYVRRLGNVVQRFHGSSCRSSCNCVLDPK 1036
+G + KE +IR GLA LVEKDLRKQVATL QS E QADEIR+L QLQ L+ N ++T +Q AT ++LG+ HPDC RL A FYP WE GVA+V +FRITVP V KHL+YVR GNVVQ FHG+SCRS+CN +LDPK
Sbjct: 157 DGQRQTKEDKIRNGLARLVEKDLRKQVATLKQSIKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLVQLQDLQRNEEQHIDSVVTFGRTQGFNATASALGDGHPDCPRLHAKFYPRWEASVGVAVVGIFRITVPAGVRGKHLSYVRSHGNVVQCFHGTSCRSACNFILDPK 348
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: A0A6H5JEL8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL8_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.120e-35 Identity = 87/191 (45.55%), Postives = 107/191 (56.02%), Query Frame = 2
Query: 590 GLPRAKEQRIRRGLALLVEKDLRKQVATLTQS------------------------------------------HSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQDARATFTSLGNAHPDCSRLCADFYPGWEVPGGVAIVRMFRITVPESVCQKHLNYVRRLGNVVQRFHGSSCRSSCNCVLDPK 1036
G + K+++IR GLA LVEKDLR QVATL QS +QADEIR+L Q+Q L+ + ++T +Q AT ++LG+ HPDC RL ADFYP WE P VAIV +FRITVP V KHL+YVR GNVVQRFHG+SCRS+CN +LDPK
Sbjct: 211 GQRQTKQEKIRSGLARLVEKDLRTQVATLEQSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLAQVQDLQRSEERHIDSVVTFGRTQGFNATASALGDGHPDCPRLHADFYPFWEAPVEVAIVGIFRITVPAGVRDKHLSYVRSHGNVVQRFHGTSCRSACNFILDPK 401
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Match: A0A6H5JCZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ5_9PHAE) HSP 1 Score: 127 bits (320), Expect = 8.560e-29 Identity = 102/208 (49.04%), Postives = 126/208 (60.58%), Query Frame = 1
Query: 1 MKAWQRITHWRRRSSKWSKSKTPPXXXXXXXXXXXXXPAQAAAAHVILLVGELE---DILPRVEQVQPNGNGEEEETKVDPSRQPYGPKESTGED-------PVVERLLRKQEELVHTGNNEMIEELHASLLKLHDNLRRSEEMAAARLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVEIELRNQVETLQKEERRA 594
MKAW ++THW RSSK SKSKT P P Q A LLV E + R Q GN EEE+T VDPS YG KE E+ P V RL RK+E L TG+ E I++L A+LL+ D+L+R+E+MA A+LKAVEDEK ALEVA ERA Q+KTM L N+EAQSV++ELRNQVETL+K++ +A
Sbjct: 1 MKAWHKVTHWSWRSSKSSKSKTQPSEEPAQAEET---PVQVARNTRTLLVHGHEKESNNFSRFGQTPAYGNHEEEKTTVDPSYCAYGAKEFVSEEECRGEECPNV-RLPRKKESL-RTGDQEEIQKLRATLLQQKDDLQRNEKMAVAKLKAVEDEKDALEVALGAERANMVTQQKTMYTLGGKNVEAQSVDMELRNQVETLKKKKSQA 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16108.4463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16108.4463.1 >prot_Ecto-sp13_S_contig16108.4463.1 ID=prot_Ecto-sp13_S_contig16108.4463.1|Name=mRNA_Ecto-sp13_S_contig16108.4463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp MKAWQRITHWRRRSSKWSKSKTPPPEGSAQAEEETTRPAQAAAAHVILLVback to top mRNA from alignment at Ecto-sp13_S_contig16108:341..2366- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16108.4463.1 ID=mRNA_Ecto-sp13_S_contig16108.4463.1|Name=mRNA_Ecto-sp13_S_contig16108.4463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16108:341..2366- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16108:341..2366- >mRNA_Ecto-sp13_S_contig16108.4463.1 ID=mRNA_Ecto-sp13_S_contig16108.4463.1|Name=mRNA_Ecto-sp13_S_contig16108.4463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16108:341..2366- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |