mRNA_Ecto-sp13_S_contig16107.4462.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16107.4462.1
Unique NamemRNA_Ecto-sp13_S_contig16107.4462.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16107.4462.1 vs. uniprot
Match: D7FNG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG0_ECTSI)

HSP 1 Score: 749 bits (1934), Expect = 1.030e-265
Identity = 413/475 (86.95%), Postives = 422/475 (88.84%), Query Frame = 1 
Query:    1 VLLPNSIRRVQHPFSGKGKPKNVTVNFISRKGAMQLSWGGKSGVPLETIFGVTKGINTDALKSVVSPDRAENCFSLHTQDRTIDFEVDNPWLVLLVVRALRLFLGAHYDTLPAPTFFSHLCLRPRGNTAAAGGAAGSSRADSPKQSLVWTSADKESPVSPLPKEQTTRSTPTERASRDSCSDEGDDRDGGGQRPPLPWEGXXXXXXXXEFDSAAGSTMFEAVPMEEGMVYPPAPDGHAPGAGSAARXXXXXXXXXXXXXXXXXMFVTDVADEEDDGDGSGDRSPGGIMALFSSGGRRSAEESSVGSAAGSIPRSRSGVEGCGVVDSSTGGTTPRGREAEAGGGPSGGAS--EGGGQLTASQVLATRGMTKRLNLSKKLAANNTGPLKGRRFDLMALPMDPGQQDRRDRGMSEHAETTMKRSQGMSISIGAGYTLPEEKNRSRGLDGEGADEGTPSMLGLDSGRTAVVDDLNDKLQ 1419
            +++   I  ++HPFSGKGKPKNVTVNF+SRKGAMQLSWGGKSGVPLETIFGVTKGINTDALKSVVSPDRAENCFSLHTQDRTIDFEVDNPWLVLLVVRALRLFLGAHYDTLPAPTFFSHLCLRPRG  A A     +SR DSPKQSLVWTSADKE PVSPLPKEQTTRSTPTERASRDS SDEGDDRDG GQRPPLPWEGXXXXXX  E DSAAGSTMFEAVPM EGMVYPPAPDGHAPGAGSAAR                 M VTD ADEEDDG GS DRSPGGIMALFSSGGRRSAEESSVGSAAGSIPRSRSGVEG G VDSSTGGTTPRGREAEAG  PS G    EG GQLTASQVLATRGMTKRLNLSKKLAANNTGPLKGRRFDLMALPMDPGQQDRRDRGMSEHAETT KRSQGMSISIGAGYTLPEEKNRS+GL+GEGADEGTPSMLGLDSGRTAVVDDLNDKLQ
Sbjct:  234 LIMERGIEVIKHPFSGKGKPKNVTVNFVSRKGAMQLSWGGKSGVPLETIFGVTKGINTDALKSVVSPDRAENCFSLHTQDRTIDFEVDNPWLVLLVVRALRLFLGAHYDTLPAPTFFSHLCLRPRGAAAGA-----NSRTDSPKQSLVWTSADKEPPVSPLPKEQTTRSTPTERASRDSASDEGDDRDGDGQRPPLPWEGXXXXXX--ELDSAAGSTMFEAVPMGEGMVYPPAPDGHAPGAGSAARAPRPPRVVAAGEDGEEGMPVTDFADEEDDGHGSADRSPGGIMALFSSGGRRSAEESSVGSAAGSIPRSRSGVEGGGGVDSSTGGTTPRGREAEAGXXPSAGXXXXEGAGQLTASQVLATRGMTKRLNLSKKLAANNTGPLKGRRFDLMALPMDPGQQDRRDRGMSEHAETTTKRSQGMSISIGAGYTLPEEKNRSKGLNGEGADEGTPSMLGLDSGRTAVVDDLNDKLQ 701
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BLAST of mRNA_Ecto-sp13_S_contig16107.4462.1 vs. uniprot
Match: A0A836CIS7_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.130e-26
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 VLLPNSIRRVQHPFSGKGKPKNVTVNFISRKGAMQLSWGGKSGVPLETIFGVTKGINTDALKSVV----------SPDRAENCFSLHTQDRTIDFEVD---------NPWLVLLVVRALRLFLGAHYDTLPAPTFFSHLCLRPRG 378
            V++   I   +HPF  + +PK V +    R+G MQL+WGG+S + L  ++GV KG+ T A++  V          +  RA  CFSL T  RT+DFEV          NPWL LLVVRA+RLFLGAH+D++P   F S + L PRG
Sbjct:  440 VIMERGIAMTKHPFGSRARPKAVALRIRQRRGVMQLTWGGRSALALSAVYGVVKGVETTAMRRSVLRTCGGDGAAAARRAPGCFSLLTPKRTLDFEVGPTLLDFQVANPWLALLVVRAMRLFLGAHFDSIPPAQFCSPVRLIPRG 584
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16107.4462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNG0_ECTSI1.030e-26586.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIS7_9STRA6.130e-2643.45Methyltransf_11 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16107contigEcto-sp13_S_contig16107:1443..3569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1419
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005590.1
Cds size1419
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.4699407-CDS-Ecto-sp13_S_contig16107:1442..16191681462850.4699407-CDS-Ecto-sp13_S_contig16107:1442..1619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16107 1443..1619 +
1681462850.480622-CDS-Ecto-sp13_S_contig16107:1849..29211681462850.480622-CDS-Ecto-sp13_S_contig16107:1849..2921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16107 1850..2921 +
1681462850.488717-CDS-Ecto-sp13_S_contig16107:3399..35691681462850.488717-CDS-Ecto-sp13_S_contig16107:3399..3569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16107 3400..3569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16107.4462.1prot_Ecto-sp13_S_contig16107.4462.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16107 1443..3569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16107.4462.1

>prot_Ecto-sp13_S_contig16107.4462.1 ID=prot_Ecto-sp13_S_contig16107.4462.1|Name=mRNA_Ecto-sp13_S_contig16107.4462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=473bp
VLLPNSIRRVQHPFSGKGKPKNVTVNFISRKGAMQLSWGGKSGVPLETIF
GVTKGINTDALKSVVSPDRAENCFSLHTQDRTIDFEVDNPWLVLLVVRAL
RLFLGAHYDTLPAPTFFSHLCLRPRGNTAAAGGAAGSSRADSPKQSLVWT
SADKESPVSPLPKEQTTRSTPTERASRDSCSDEGDDRDGGGQRPPLPWEG
GGGGGGGGEFDSAAGSTMFEAVPMEEGMVYPPAPDGHAPGAGSAARAPRP
PRAVAAGEDGEEGMFVTDVADEEDDGDGSGDRSPGGIMALFSSGGRRSAE
ESSVGSAAGSIPRSRSGVEGCGVVDSSTGGTTPRGREAEAGGGPSGGASE
GGGQLTASQVLATRGMTKRLNLSKKLAANNTGPLKGRRFDLMALPMDPGQ
QDRRDRGMSEHAETTMKRSQGMSISIGAGYTLPEEKNRSRGLDGEGADEG
TPSMLGLDSGRTAVVDDLNDKLQ
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mRNA from alignment at Ecto-sp13_S_contig16107:1443..3569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16107.4462.1 ID=mRNA_Ecto-sp13_S_contig16107.4462.1|Name=mRNA_Ecto-sp13_S_contig16107.4462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2127bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16107:1443..3569+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTTTTGCCGAATTCTATTCGTCGAGTGCAGCACCCCTTCAGCGGAAA
GGGCAAGCCCAAGAACGTCACGGTAAACTTCATCTCTAGAAAGGGCGCGA
TGCAGCTTAGCTGGGGGGGCAAGAGCGGGGTACCCTTGGAGACCATCTTC
GGAGTGACCAAGGGCATCAACACGGACGTAAGTGCGCCCTTTCGTGAAGT
TCCTCTGAACGGTGATTGGCAGCCTAATTCTCTATTTTGCGACCTACATG
CTGCACGTGCCGTATTTCCTGTCACAGCAGCCCTTGTGTCTTGGACGTGC
TTCGGTGTGATCTCCGTTCACCTGCAGATCTTAGGCGGCAATGTATGCCT
AACCTCGCGCGTGTTCTTAATTTCCCTCGACCCCCCCCCCTCTCACACGG
TACACAGGCCCTCAAGAGCGTGGTGAGCCCGGACCGAGCGGAGAACTGCT
TCTCGCTGCACACGCAGGACCGCACGATAGACTTCGAGGTGGACAACCCG
TGGCTTGTTCTGCTGGTGGTGCGGGCGCTGCGGCTCTTCCTCGGCGCGCA
CTACGACACCCTCCCGGCCCCCACGTTCTTCTCGCACCTGTGCCTGCGCC
CGCGGGGCAACACCGCGGCCGCCGGCGGCGCCGCCGGGAGCAGCCGGGCG
GACAGCCCCAAGCAGTCCCTGGTGTGGACCAGCGCGGATAAGGAGTCGCC
CGTATCGCCGCTGCCCAAGGAGCAGACGACTAGGTCCACCCCCACGGAGC
GCGCCTCGCGGGACTCGTGCTCGGACGAGGGCGACGACCGCGACGGCGGC
GGCCAGAGGCCTCCCTTGCCCTGGGAGGGCGGCGGCGGCGGCGGCGGCGG
CGGCGAGTTCGACAGCGCGGCCGGCAGCACCATGTTCGAGGCGGTCCCGA
TGGAGGAGGGCATGGTGTACCCGCCGGCGCCGGACGGCCATGCCCCCGGA
GCGGGATCGGCGGCCCGCGCTCCACGCCCCCCCCGCGCGGTGGCGGCCGG
GGAGGACGGCGAGGAAGGGATGTTCGTCACCGACGTCGCGGACGAGGAGG
ACGACGGGGATGGTTCGGGGGACCGGTCTCCCGGAGGGATCATGGCGCTG
TTCTCGTCCGGGGGGAGGCGGAGCGCGGAGGAGTCGAGCGTCGGCAGCGC
AGCCGGGTCGATCCCCAGGAGCAGGAGCGGGGTGGAGGGCTGCGGAGTGG
TCGACTCTTCGACGGGCGGGACGACGCCCAGGGGCCGGGAGGCGGAGGCT
GGTGGTGGGCCGAGCGGCGGCGCCAGCGAAGGCGGTGGGCAACTGACGGC
GTCGCAGGTGCTGGCGACCCGGGGCATGACGAAGAGGCTGAACCTGTCAA
AGAAGCTCGCGGCGAACAACACGGGGCCGCTGAAGGGGAGGAGGTTCGAC
CTGATGGCTCTGCCGATGGACCCCGGGCAACAAGACAGGCGGGACCGAGG
GATGAGCGAGCACGCGGAGACAACAATGAGTGAGTATAGCCTCATGTCTT
GCCATGGGAGGATTTTTTTTTTTTTCTTGTCCTTCCCGTCCGTTCGCCGA
GTTAGTGTTTGGTTCTTAGCGCGGTGCGAGAGAGTGTTAGGGTGGCAGTG
TTTTTTTTGGCAGGAGGATTTTGACCGGTGGAGGCAATGTTGTGTTGCGG
AGGCCCGTGCTCGGTCCCCGTGTGTTACACGTCACGCGAGCGTCTTGTGT
CCAGCACCAGCATCTTGCTCAACAAGAGCGCGGGGGTGATCACGAACCCA
TGGTGTTTTTTTCTGCTGTGCTTCGTGCGTGACTCCGCTGACTCTCGCAC
TTGACTGTTGTCAACCAAGCGATGTTCCCCCGACTTCCTGACGTGCTCCA
GTTCATGACGTGCTCAAGGTGTTTTTTTTTGTTCTTGTCACGATCCTTGA
TCTTTATTCTCGCCGCTCTGGCGCCTTGCGTGTTCCTTCTGTGGGGCGCT
GCTGCAGAACGTTCGCAAGGAATGTCGATATCTATCGGCGCTGGCTACAC
CCTCCCGGAAGAGAAGAACAGATCGAGGGGCCTCGACGGCGAAGGGGCAG
ACGAGGGAACGCCGAGCATGTTGGGGCTCGACTCCGGGCGCACCGCTGTG
GTGGACGATCTCAACGACAAACTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16107:1443..3569+

>mRNA_Ecto-sp13_S_contig16107.4462.1 ID=mRNA_Ecto-sp13_S_contig16107.4462.1|Name=mRNA_Ecto-sp13_S_contig16107.4462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16107:1443..3569+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTTTTGCCGAATTCTATTCGTCGAGTGCAGCACCCCTTCAGCGGAAA
GGGCAAGCCCAAGAACGTCACGGTAAACTTCATCTCTAGAAAGGGCGCGA
TGCAGCTTAGCTGGGGGGGCAAGAGCGGGGTACCCTTGGAGACCATCTTC
GGAGTGACCAAGGGCATCAACACGGACGCCCTCAAGAGCGTGGTGAGCCC
GGACCGAGCGGAGAACTGCTTCTCGCTGCACACGCAGGACCGCACGATAG
ACTTCGAGGTGGACAACCCGTGGCTTGTTCTGCTGGTGGTGCGGGCGCTG
CGGCTCTTCCTCGGCGCGCACTACGACACCCTCCCGGCCCCCACGTTCTT
CTCGCACCTGTGCCTGCGCCCGCGGGGCAACACCGCGGCCGCCGGCGGCG
CCGCCGGGAGCAGCCGGGCGGACAGCCCCAAGCAGTCCCTGGTGTGGACC
AGCGCGGATAAGGAGTCGCCCGTATCGCCGCTGCCCAAGGAGCAGACGAC
TAGGTCCACCCCCACGGAGCGCGCCTCGCGGGACTCGTGCTCGGACGAGG
GCGACGACCGCGACGGCGGCGGCCAGAGGCCTCCCTTGCCCTGGGAGGGC
GGCGGCGGCGGCGGCGGCGGCGGCGAGTTCGACAGCGCGGCCGGCAGCAC
CATGTTCGAGGCGGTCCCGATGGAGGAGGGCATGGTGTACCCGCCGGCGC
CGGACGGCCATGCCCCCGGAGCGGGATCGGCGGCCCGCGCTCCACGCCCC
CCCCGCGCGGTGGCGGCCGGGGAGGACGGCGAGGAAGGGATGTTCGTCAC
CGACGTCGCGGACGAGGAGGACGACGGGGATGGTTCGGGGGACCGGTCTC
CCGGAGGGATCATGGCGCTGTTCTCGTCCGGGGGGAGGCGGAGCGCGGAG
GAGTCGAGCGTCGGCAGCGCAGCCGGGTCGATCCCCAGGAGCAGGAGCGG
GGTGGAGGGCTGCGGAGTGGTCGACTCTTCGACGGGCGGGACGACGCCCA
GGGGCCGGGAGGCGGAGGCTGGTGGTGGGCCGAGCGGCGGCGCCAGCGAA
GGCGGTGGGCAACTGACGGCGTCGCAGGTGCTGGCGACCCGGGGCATGAC
GAAGAGGCTGAACCTGTCAAAGAAGCTCGCGGCGAACAACACGGGGCCGC
TGAAGGGGAGGAGGTTCGACCTGATGGCTCTGCCGATGGACCCCGGGCAA
CAAGACAGGCGGGACCGAGGGATGAGCGAGCACGCGGAGACAACAATGAA
ACGTTCGCAAGGAATGTCGATATCTATCGGCGCTGGCTACACCCTCCCGG
AAGAGAAGAACAGATCGAGGGGCCTCGACGGCGAAGGGGCAGACGAGGGA
ACGCCGAGCATGTTGGGGCTCGACTCCGGGCGCACCGCTGTGGTGGACGA
TCTCAACGACAAACTCCAG
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