mRNA_Ecto-sp13_S_contig16101.4460.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16101.4460.1
Unique NamemRNA_Ecto-sp13_S_contig16101.4460.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16101.4460.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)

HSP 1 Score: 452 bits (1164), Expect = 1.560e-153
Identity = 301/347 (86.74%), Postives = 307/347 (88.47%), Query Frame = 1 
Query:    1 GIRRKAFIEGIKACDVLQTREILLALSWMMAKAKVFPAFEQSRLISPLPTTTPAANPTPXXXXXXXXXXXXXXXXFPRDVSETPEVRRVSAEAFAALLAAEERRSVPPPDWGGRLGKEEAVRMGEAEAKGEGMARALGAAREMMSCYGGLEGELRVVEGLETARQRMLRRMRSLFRDVAESQPGSGKVAASPRTNETRLGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-QPATKTTSRCQRPSRQENTPPAEASPFFLCLVAGRPPGELSRSLAKVSRAREVLDALDEGREHAGRWYRWASSALVAAESAAPLRSGADSGAAAGGRG 1038
            G RRKAFIEGIKACDVLQTRE+LLALSWMMAKAKVFPAFEQ+RL+SPLPTTTPA NPTP                FPRDVSETPEVRRVSAEAFAA LA E RRSVPPPDWGGRLGKEE VRMGEAEAKGEGMARALGAAREMMSCYGGLEGELRVVEGLETARQRML RMRSLFRDVAESQPGSGKVAASPRT E R     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QP TKTTSRCQRPSR++ TP AE SPF LCLVA RPPGELSRSLAKV+RAREVLDALDEGREHAGRW RWASSALVAAESAAP RSGADSGAAAG RG
Sbjct:  130 GYRRKAFIEGIKACDVLQTREVLLALSWMMAKAKVFPAFEQARLVSPLPTTTPATNPTPPHGENVSASSPTPPP-FPRDVSETPEVRRVSAEAFAAFLATEGRRSVPPPDWGGRLGKEEGVRMGEAEAKGEGMARALGAAREMMSCYGGLEGELRVVEGLETARQRMLLRMRSLFRDVAESQPGSGKVAASPRTTEARPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPTTKTTSRCQRPSRKKCTPRAEVSPFCLCLVACRPPGELSRSLAKVTRAREVLDALDEGREHAGRWCRWASSALVAAESAAPPRSGADSGAAAGSRG 475
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BLAST of mRNA_Ecto-sp13_S_contig16101.4460.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 455 bits (1171), Expect = 5.580e-149
Identity = 293/349 (83.95%), Postives = 298/349 (85.39%), Query Frame = 1 
Query:    1 GIRRKAFIEGIKACDVLQTREILLALSWMMAKAKVFPAFEQSRLISPLPTTTPAANPTPXXXXXXXXXXXXXXXXFPRDVSETPEVRRVSAEAFAALLAAEERRSVPPPDWGGRLGKEEAVRMGEAEAKGEGMARALGAAREMMSCYGGLEGELRVVEGLETARQRMLRRMRSLFRDVAESQPGSGKVAASPRTNETRLGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---QPATKTTSRCQRPSRQENTPPAEASPFFLCLVAGRPPGELSRSLAKVSRAREVLDALDEGREHAGRWYRWASSALVAAESAAPLRSGADSGAAAGGRG 1038
            G RRKAFIEGIKACDVLQTRE+LLALSWMMAKAK FPAFEQSRL+SPLPT TPA NPTP    XXXXXXXXXXXXFPRDVSETPEVRRVSAEAFAA LAAEERRSVPPPDWGGRLGKEEAVRMGEAEAKGEGMARALGAAREMMSCYGGLE ELRVVEGLETARQRMLRRMRSLFRDVAES PGSGKVAAS RT ET  G QQXXXXXXXXXXXXX                       XXXXXXXXX   QP TKT SRCQRPSR+++TPPAEASPF LCLVAGR PGELSRSLAKVSRAREVLDALDEGREHAGRW RWASSALVAAESA P RSGA SGAAAG RG
Sbjct:  400 GYRRKAFIEGIKACDVLQTRELLLALSWMMAKAKAFPAFEQSRLVSPLPTKTPA-NPTPPQGGXXXXXXXXXXXXFPRDVSETPEVRRVSAEAFAAFLAAEERRSVPPPDWGGRLGKEEAVRMGEAEAKGEGMARALGAAREMMSCYGGLEAELRVVEGLETARQRMLRRMRSLFRDVAESHPGSGKVAASLRTIETGPGYQQXXXXXXXXXXXXXPSAMSTSRAGTADATAMPGRAGAXXXXXXXXXSATQPTTKTASRCQRPSRKKHTPPAEASPFCLCLVAGRSPGELSRSLAKVSRAREVLDALDEGREHAGRWCRWASSALVAAESAPPPRSGAVSGAAAGSRG 747
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16101.4460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2T0_ECTSI1.560e-15386.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF2_9PHAE5.580e-14983.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16101contigEcto-sp13_S_contig16101:194..2683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1053
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004250.1
Cds size1053
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462850.3796005-CDS-Ecto-sp13_S_contig16101:193..2561681462850.3796005-CDS-Ecto-sp13_S_contig16101:193..256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16101 194..256 +
1681462850.3906415-CDS-Ecto-sp13_S_contig16101:1104..15151681462850.3906415-CDS-Ecto-sp13_S_contig16101:1104..1515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16101 1105..1515 +
1681462850.4001122-CDS-Ecto-sp13_S_contig16101:2104..26831681462850.4001122-CDS-Ecto-sp13_S_contig16101:2104..2683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16101 2105..2683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16101.4460.1prot_Ecto-sp13_S_contig16101.4460.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16101 194..2683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16101.4460.1

>prot_Ecto-sp13_S_contig16101.4460.1 ID=prot_Ecto-sp13_S_contig16101.4460.1|Name=mRNA_Ecto-sp13_S_contig16101.4460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=351bp
GIRRKAFIEGIKACDVLQTREILLALSWMMAKAKVFPAFEQSRLISPLPT
TTPAANPTPPQGGNKPASSPPPPPPFPRDVSETPEVRRVSAEAFAALLAA
EERRSVPPPDWGGRLGKEEAVRMGEAEAKGEGMARALGAAREMMSCYGGL
EGELRVVEGLETARQRMLRRMRSLFRDVAESQPGSGKVAASPRTNETRLG
QQQQQQQRQQQQQQPSATSTSPAGTADAAAMSGRAGAAAAGTAAATATQP
ATKTTSRCQRPSRQENTPPAEASPFFLCLVAGRPPGELSRSLAKVSRARE
VLDALDEGREHAGRWYRWASSALVAAESAAPLRSGADSGAAAGGRGELVL
*
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mRNA from alignment at Ecto-sp13_S_contig16101:194..2683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16101.4460.1 ID=mRNA_Ecto-sp13_S_contig16101.4460.1|Name=mRNA_Ecto-sp13_S_contig16101.4460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2490bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16101:194..2683+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTATCAGGAGGAAGGCTTTCATCGAAGGAATCAAGGCTTGCGATGTGCT
ACAGACACGAGAGGTTGGTGCTGGAAATGTATTCAAGTAACCCGACGTAG
ATATTTCCTCATTTTTTGAGACACAGAACTTGTCCAACTTTCTTCCCTTC
GTTGAATAGGACGCTGGCTGTGGTTGGTCGACTGTGTTTATTTGTTTCGG
TGAGTCGTTGGAGCAGTGGCGGCATCCAAGCGGCAGGGTTACCGTAGAAC
GTTGTCACAGAACTCTCACGGTTTCTCGCGGTGCTGTCTACAAAAGCCAC
AAAGGATGAACAATGAGGTTGCGTTGTTTCTTCTGCCAAGACAATACGCC
TGGGGTCGTTCCCCTTCGTGAGGTGCACCGTCGCGGAATGCACGAGAGCA
GAACGTCGAAATTACCCTCCGAGCCCTCCCTGTTTGTTAGGTGGTATTAC
CTGACATCAATGGCCGCACTTGTCCTTGTTATTTGGGCATAGCTAGACAA
CGGTGGCTGCACGCGGGTGCAGGACTGGCGCAAAATATATCTGGAGAGAG
CACGCAGGTTTTGGGACTCGTTTTCGCGCGCGACACATGGAGCTATCGGG
GGTTCCTTTCCGGTGATTCGCCACGCACTGCTATCAGATTCCCCGGCGAC
GAGATCAAATAATAGAGTTTTTCTCCAAAATACTCTTCGATAGACGTAGT
TCTGTGGGACCACTCTGGCTCAAAGGTACCTACCCCAGCTCCGGTTGTTC
CCGTTTATCCCCGCCCCTCGATTCCCCCCCGGTCCCTTCAAGGTCCCTTT
CCCCCCGCTTCCTTCCCCCCCGATCCCTTTACCCCCGCCCCCGCTCCCTG
CTTCCCTGCCTCCGAGTTTTTCTTCTTCGTGTTCCCCGCTTTTTTTTTCT
TTTTTTTTTAGATTTTGCTGGCGCTCTCTTGGATGATGGCGAAGGCGAAA
GTCTTCCCGGCCTTCGAGCAGTCTCGCCTCATCTCGCCCCTCCCGACGAC
GACCCCCGCCGCCAACCCAACACCCCCGCAGGGCGGGAACAAACCGGCGT
CGTCACCCCCGCCGCCGCCGCCGTTCCCACGGGACGTTTCCGAGACCCCG
GAAGTTCGGCGGGTTTCCGCGGAAGCGTTCGCGGCGCTCCTGGCAGCGGA
AGAACGGCGCTCGGTTCCTCCGCCGGACTGGGGGGGGCGTCTGGGAAAGG
AAGAGGCGGTGCGGATGGGAGAGGCGGAGGCCAAGGGGGAAGGAATGGCG
AGGGCTCTGGGGGCAGCGAGGGAGATGATGTCCTGCTACGGGGGTCTCGA
GGGGGAGCTCCGGGTTGTGGAGGTGCGGCGGGGCGCGGCGTCGTCGAGCG
GGGCGGATGAGTGAACCGCGCTCTCCTGTTGGAGGCACGCTTCCTTTTCC
TTGCCTCGTCGAGGGGGCTGGCCCGGTGTTCGCTGTGACCGTTTTTGGAT
TCTGGTGATATCGTGCTTGATACGTGGCATGTGTACGAGGTCGTGTTTTC
TCTTGGTCGACTCCCCCCAAAACGTTTTTTTTAACATGCGGCGCGCTTTC
CAAGGCATGCGCTGCAAGCGACACCAAACCTATGGTAGGCGTGCTTGAGC
GGCGAGGTCTTGGACAAGCCCTCAGGATGGGAGTTCCCCTTGAGGCGACA
GCCAACGGGCGGATGCACATGGCTTGTTTGTAGCATGTGGTGGCAGTTGA
GAAAATGATGCTATCCTGCCCTTGAGAAAAGGATGCCATCCTACCCATGC
TTTCGCAAGAGTTTGTCTACGCAATAGTCGAGGGTATGTGCACCACACGA
CAGTGAAGCCGAAAGAGAACGGTTATACGCGACCCTTCCACGTCACCCAC
GCCCTTATCCCACCCGGAAAAATACCGCCCTGCAACCTGCGCGATTGATT
GCTACTTCTAGGGCCTAGAAACGGCGAGGCAGCGAATGCTTCGGAGAATG
CGAAGCCTGTTCCGAGACGTGGCTGAATCCCAACCCGGGAGTGGCAAAGT
TGCAGCTTCGCCGCGGACCAACGAGACAAGACTGGGGCAACAACAACAAC
AACAGCAACGGCAGCAACAACAGCAGCAGCCCTCCGCCACGAGCACCTCT
CCCGCCGGAACAGCCGACGCTGCTGCGATGTCCGGGCGGGCGGGGGCAGC
CGCCGCCGGCACAGCAGCGGCCACCGCGACCCAACCAGCGACGAAGACGA
CGAGCCGCTGCCAACGCCCGAGCAGACAAGAAAACACGCCGCCTGCCGAG
GCGTCCCCGTTCTTCCTGTGCCTGGTGGCCGGAAGGCCGCCGGGCGAACT
TTCCCGCTCCCTCGCGAAGGTCTCCAGGGCCCGCGAGGTGCTGGACGCGC
TCGATGAGGGCCGTGAGCACGCCGGTCGGTGGTATCGGTGGGCCTCCTCC
GCGCTAGTGGCGGCGGAGTCGGCGGCGCCCCTCCGAAGCGGCGCCGATTC
AGGCGCAGCAGCAGGCGGTAGAGGTGAGCTGGTTTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16101:194..2683+

>mRNA_Ecto-sp13_S_contig16101.4460.1 ID=mRNA_Ecto-sp13_S_contig16101.4460.1|Name=mRNA_Ecto-sp13_S_contig16101.4460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16101:194..2683+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTATCAGGAGGAAGGCTTTCATCGAAGGAATCAAGGCTTGCGATGTGCT
ACAGACACGAGAGATTTTGCTGGCGCTCTCTTGGATGATGGCGAAGGCGA
AAGTCTTCCCGGCCTTCGAGCAGTCTCGCCTCATCTCGCCCCTCCCGACG
ACGACCCCCGCCGCCAACCCAACACCCCCGCAGGGCGGGAACAAACCGGC
GTCGTCACCCCCGCCGCCGCCGCCGTTCCCACGGGACGTTTCCGAGACCC
CGGAAGTTCGGCGGGTTTCCGCGGAAGCGTTCGCGGCGCTCCTGGCAGCG
GAAGAACGGCGCTCGGTTCCTCCGCCGGACTGGGGGGGGCGTCTGGGAAA
GGAAGAGGCGGTGCGGATGGGAGAGGCGGAGGCCAAGGGGGAAGGAATGG
CGAGGGCTCTGGGGGCAGCGAGGGAGATGATGTCCTGCTACGGGGGTCTC
GAGGGGGAGCTCCGGGTTGTGGAGGGCCTAGAAACGGCGAGGCAGCGAAT
GCTTCGGAGAATGCGAAGCCTGTTCCGAGACGTGGCTGAATCCCAACCCG
GGAGTGGCAAAGTTGCAGCTTCGCCGCGGACCAACGAGACAAGACTGGGG
CAACAACAACAACAACAGCAACGGCAGCAACAACAGCAGCAGCCCTCCGC
CACGAGCACCTCTCCCGCCGGAACAGCCGACGCTGCTGCGATGTCCGGGC
GGGCGGGGGCAGCCGCCGCCGGCACAGCAGCGGCCACCGCGACCCAACCA
GCGACGAAGACGACGAGCCGCTGCCAACGCCCGAGCAGACAAGAAAACAC
GCCGCCTGCCGAGGCGTCCCCGTTCTTCCTGTGCCTGGTGGCCGGAAGGC
CGCCGGGCGAACTTTCCCGCTCCCTCGCGAAGGTCTCCAGGGCCCGCGAG
GTGCTGGACGCGCTCGATGAGGGCCGTGAGCACGCCGGTCGGTGGTATCG
GTGGGCCTCCTCCGCGCTAGTGGCGGCGGAGTCGGCGGCGCCCCTCCGAA
GCGGCGCCGATTCAGGCGCAGCAGCAGGCGGTAGAGGTGAGCTGGTTTTG
TAG
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