mRNA_Ecto-sp13_S_contig16091.4451.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16091.4451.1
Unique NamemRNA_Ecto-sp13_S_contig16091.4451.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16091.4451.1 vs. uniprot
Match: D8LJ81_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ81_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.520e-58
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:   76 MVSAFDVELPFPVRDGRRRRLSINEVATYRDIALTRGHAGRTLGKAKRALKMGAVEAARLVDIMRQVDVSAAGSLGRYDFSLALDRAGVELPAEDKDALFRSLSSARTAGT 408
            MVSAFDVELPFPVRDGRRRRLSINEVATYRDIALTRGHAG+ LGKAKRALKMG VEAARLVDIMRQVDVSAAGSLGR+DFSLALDRAGVELPAEDKDALFRSLSSARTAGT
Sbjct:    1 MVSAFDVELPFPVRDGRRRRLSINEVATYRDIALTRGHAGKALGKAKRALKMGTVEAARLVDIMRQVDVSAAGSLGRFDFSLALDRAGVELPAEDKDALFRSLSSARTAGT 111
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BLAST of mRNA_Ecto-sp13_S_contig16091.4451.1 vs. uniprot
Match: A0A6H5K5F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.110e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  229 MGAVEAARLVDIMRQVDVSAAGSLGRYDFSLALDRAGVELPAEDKDALFRSLSSARTAGT 408
            MG VEAARLVDIMRQVDVSA+GSLGRYDFSLALDRAGVELPAEDKDALFRSLSSARTAGT
Sbjct:    1 MGPVEAARLVDIMRQVDVSASGSLGRYDFSLALDRAGVELPAEDKDALFRSLSSARTAGT 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16091.4451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ81_ECTSI2.520e-5896.40EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K5F8_9PHAE5.110e-2696.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16091contigEcto-sp13_S_contig16091:1198..3245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size410
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005100.1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.3781545-UTR-Ecto-sp13_S_contig16091:1197..12721681462849.3781545-UTR-Ecto-sp13_S_contig16091:1197..1272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16091 1198..1272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.3887665-CDS-Ecto-sp13_S_contig16091:1272..12981681462849.3887665-CDS-Ecto-sp13_S_contig16091:1272..1298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16091 1273..1298 +
1681462849.3982654-CDS-Ecto-sp13_S_contig16091:1835..20071681462849.3982654-CDS-Ecto-sp13_S_contig16091:1835..2007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16091 1836..2007 +
1681462849.4077737-CDS-Ecto-sp13_S_contig16091:3110..32451681462849.4077737-CDS-Ecto-sp13_S_contig16091:3110..3245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16091 3111..3245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16091.4451.1prot_Ecto-sp13_S_contig16091.4451.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16091 1273..3245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16091.4451.1

>prot_Ecto-sp13_S_contig16091.4451.1 ID=prot_Ecto-sp13_S_contig16091.4451.1|Name=mRNA_Ecto-sp13_S_contig16091.4451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MVSAFDVELPFPVRDGRRRRLSINEVATYRDIALTRGHAGRTLGKAKRAL
KMGAVEAARLVDIMRQVDVSAAGSLGRYDFSLALDRAGVELPAEDKDALF
RSLSSARTAGT
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mRNA from alignment at Ecto-sp13_S_contig16091:1198..3245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16091.4451.1 ID=mRNA_Ecto-sp13_S_contig16091.4451.1|Name=mRNA_Ecto-sp13_S_contig16091.4451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2048bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16091:1198..3245+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAGTAGTCGCGAGGTACCTCTGAGTGCGCGAGGGAGGCGCCTTGTCC
TGTACCAAAAAGGGCTCCAATCACCATGGTCTCGGCATTCGACGTTGAAC
TGTGAGATATTTGGGGACGTGTGTGGGTTCTTTCCTACGTTGCCTGCAGT
CTGTGTTGGCTGGCTGTTTGAAAATTCTTCTCAATCTCTCCAACGCCTGT
CGTTGGTATTTTAGTAGATATCTTTGTGAACGTTCCCCGTTTGAGCTCCA
CGGGAGCTGTGTTTGCTCTTGTCGTCACGCAGTACAGCGTGTTTGCTCAG
TACATTCCGCCTGACTCTTGCCACGTTGCTGGTGCCCTACATTACCCAGC
TTTCCGAGCTCCGAGCAGAATTCTCTCCACGTTTTCAACTCAACTGCAAA
CACAACTGCAGTCGTAGATTTTGTCCATGTCCCCCAAAAAAGAAACGGAC
AACGAACAATGGTATCCAGGCTGTTCCAATCCATGTCGACGACAACGCGC
TGCTAATCAGGGAAACACCAGCCATCCTTACAGATGGCGTGAAAGTATCA
CTGCCGCACCCCGCGTCTCGCTGGCTCTGCTTTGCCAATGCCCTCAACGC
CGCCCCCATCCCTCTCCGTCGAATCATCGTCATCACAGGCCGTTTCCTGT
GCGGGATGGCAGACGACGTCGGCTTAGCATCAATGAGGTGGCCACGTACA
GAGACATCGCTCTGACCCGTGGGCACGCGGGCAGGACGCTCGGAAAGGCC
AAGAGGGCCCTGAAGATGGGGGCCGTGGAGGCGGCAAGGCTCGTAGATAT
CATGCGGCAGGTATGCACAAGTGGGGTTGCACACAAACTTGTATAATGCT
GTACGGAGTATAACCAGGAGCTGCAGTGTACAAATCCAGGACGGATGCTT
AACGTACATGATCTCCTGCTGATAGCTCCTGTGAACGAGGGTAGACAACC
CTCACTCCTACCGGCGTTGCTGCACCTTAAGTGGAAGCCCTCCGATAGAC
CCCGTTTATCATGTCCGTCGAATTGGGCAGATTAACAGCAGCAGCAATAA
GCCTACCAGGTACAGCAGTGTAGTAGTAGTTCATTTTCGTGTTTTTTTCT
AACAGCCCTACTACACAGGGACCACGGGTAAGACTACGTGTCTTTGCCAC
AACATTCCCATGATCATTCGACCAGACCCACATGTTCATCCAGCGTCGCT
GCCTTCTGTCTACCTCCTGTCACACAAGGATGACGGACACATTGTTCTTT
TGGACTATTGTCATACATACGACGATGGTATCGTTAACATGCAACAGATA
CGTAGCTGGCGGGGTGGACATGGAAAACACTAATGATGACTGAGCCAATG
CAAATACGTTGCCGCCGTGCTTGCTTGCACCCCTCCTCGCGACGTAGAAA
TTGTAGACGGTATTCCCCGCCGCTGCGCGCTGGTGGTGAAAGGGCGATTG
TTGATGGGGAGCACTTGCAAAGTGGTGTTGTAGCGATTGAGAAAAGCACT
CGGAGATGTTTACGCCCTCCCGCTTCTGCTGGGCTAGCGAAGTATTTGTT
GTATTGTGCGCACGAGTCCACCACGCGTTTTGTGAGCCGATAATGCTCTC
TCTTGACTTGAAAATTGTCTGCCGCTGCTGTTGCGCGTGGTGCAATGTTG
TATAACACACCATGCGCTGACTAGAGTGCTCCGACAGCGGGAGGTGTTGC
TCCCACGCGTACCTAGAAGTATCAGCGAGGCACAAACAAGTTTTGCGCGT
GTGTGCTTTCATCCCCTTCATTCTGTACTCCAGCCATACACCTCTCCCGG
CATGCCTGGGCAGAAAAAAGGGACTTACGAGAAGACAGGAAAATTGATCA
TCAGTTTATTTGGCCTGCCGCCGCCGCTGCTGCTGCTGCTGCTGCTCGTG
CTGTCCTGTGCAGGTGGACGTGTCGGCGGCAGGGTCGCTAGGACGGTACG
ATTTCTCGCTCGCCCTGGACCGAGCCGGGGTGGAGTTGCCAGCAGAAGAC
AAAGACGCTCTTTTTCGGTCGCTGTCTTCGGCGAGGACGGCAGGGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16091:1198..3245+

>mRNA_Ecto-sp13_S_contig16091.4451.1 ID=mRNA_Ecto-sp13_S_contig16091.4451.1|Name=mRNA_Ecto-sp13_S_contig16091.4451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16091:1198..3245+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTCGGCATTCGACGTTGAACTGCCGTTTCCTGTGCGGGATGGCAG
ACGACGTCGGCTTAGCATCAATGAGGTGGCCACGTACAGAGACATCGCTC
TGACCCGTGGGCACGCGGGCAGGACGCTCGGAAAGGCCAAGAGGGCCCTG
AAGATGGGGGCCGTGGAGGCGGCAAGGCTCGTAGATATCATGCGGCAGGT
GGACGTGTCGGCGGCAGGGTCGCTAGGACGGTACGATTTCTCGCTCGCCC
TGGACCGAGCCGGGGTGGAGTTGCCAGCAGAAGACAAAGACGCTCTTTTT
CGGTCGCTGTCTTCGGCGAGGACGGCAGGGACC
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