mRNA_Ecto-sp13_S_contig1609.4450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1609.4450.1
Unique NamemRNA_Ecto-sp13_S_contig1609.4450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: D8LJD6_ECTSI (Ribosomal protein L11 methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD6_ECTSI)

HSP 1 Score: 634 bits (1636), Expect = 1.680e-227
Identity = 317/331 (95.77%), Postives = 322/331 (97.28%), Query Frame = 1
Query:    1 MITVWSQAFGWQAFLVSILILPSTPFVNHAHQLSSRSSSRSCAINRRRPSPTTAMPRPLSSLATADADVNGAGQQSAVDELWWEEGGAVQSLEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAGERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 993
            MITVWSQA  WQAFLVS LILPSTPFVNHAHQL SRSSSRSCA+NRRRPSPTTA+PRPL SLATADADVN AGQQSAVDELWWEEGGAVQSLEI+CRDAKG E+DPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVA VEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHT LPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAG+RVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV
Sbjct:    1 MITVWSQASSWQAFLVSSLILPSTPFVNHAHQLPSRSSSRSCAMNRRRPSPTTAIPRPLPSLATADADVNAAGQQSAVDELWWEEGGAVQSLEIACRDAKGSELDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVATVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTPLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAGQRVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 331          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A835Z7L3_9STRA (Ribosomal protein L11 methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L3_9STRA)

HSP 1 Score: 256 bits (653), Expect = 5.610e-79
Identity = 129/253 (50.99%), Postives = 168/253 (66.40%), Query Frame = 1
Query:  244 WWEEGGAVQSLEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVA---GERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 993
            WW E   +++L I C D KG  +D   L   L +VGA+SV+ +DA  GT  E+PLLHEH  S   + +    +++   + W  ++ V A FPR+W+L G +  +E+V  L   LSF VDD+ DKDWVK+VQ+ W PI +G LRIRFPWH +L       GQVEL LEGGR+FGTGEHPTT MCCTWLE  +    G RVLDYGSGSG+LGLAAL +GA EA+G+E+D+ AI S+  NA  N L +  Y+P+EV
Sbjct:   59 WWGEDTQLKALRIPCSDCKGNVLDAGTLMGFLSEVGALSVTAEDAARGTDQEIPLLHEHDASLGLETTWT--NIASGSEYWANTT-VTAHFPRDWELQGTIDMIEQVFNLPCALSFSVDDIQDKDWVKSVQQTWHPITLGNLRIRFPWHDALNEDSAGTGQVELCLEGGRAFGTGEHPTTRMCCTWLERCLQVSPGARVLDYGSGSGLLGLAALKYGASEAIGIEVDVDAILSSLYNAQMNDLDIKFYHPREV 308          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A6V1NRU4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRU4_HETAK)

HSP 1 Score: 187 bits (475), Expect = 8.040e-52
Identity = 109/295 (36.95%), Postives = 157/295 (53.22%), Query Frame = 1
Query:  265 VQSLEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEH-TNSKAFDPSVPLP------------SVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSE-----------------LKPGQVELELE------------------GGRSFGTGEHPTTSMCCTWLEDNVA----GERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 993
            +++L I CRD  G ++DP  LS+ LM++GA SVS++D++ GT AE P+  E  T    FD +  L             + +  + +W  +SRVVA  P  W+   VV  V    ELA   +F+V+D+ D+DWV  VQE W P+ +G +R++FPWH+ LP  E                 +KP   +   E                  GG +FGTG+HPTT MC  W+++       G  +LDYG+GSGILG+ A+ FG    VGVE+D  AI +A  NA  N L+M+ Y P+E+
Sbjct:   82 LKALVIECRDDSGNDLDPSLLSDFLMEIGACSVSIEDSNRGTAAETPVYREPPTGGVVFDGADTLAGTPTGALQATAAAAAAPRPLWA-ASRVVAHLPAAWNSEEVVMLVGATFELAVLPAFRVEDIQDRDWVSAVQENWQPMILGSVRVKFPWHSDLPAEEGVTDILLQGSFQSVEEVVKPIADQSRRERAAARMAATRKTYSKGAAGGAAFGTGDHPTTRMCARWVQEQAQRARPGTTLLDYGAGSGILGMIAMKFGIQRVVGVEIDRDAIRTAIENAKLNKLEMEFYLPEEI 375          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A7S1HNT9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HNT9_HEMAN)

HSP 1 Score: 177 bits (448), Expect = 5.010e-50
Identity = 109/250 (43.60%), Postives = 143/250 (57.20%), Query Frame = 1
Query:  274 LEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNS--KAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHT----SLPPSELKPGQV--ELELEGGRSFGTGEHPTTSMCCTWLEDNVA-GERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMD--TYYPQE 990
            + I C D +   +D   LS+LL++ GA+S SV+DAD GT  E P+  E      +A    V L         W    +V ALF   WD+ GV+  V+E  EL     +K+  V DKDWV  VQ  W PI VG L ++FPWH+        +E+  G+   EL LEGG +FGTGEH TT +CC WL+  V  G RVLDYG+GSGILG+AAL FGA EA+GV++D  ++ +AA NA  N L      Y P +
Sbjct:   25 VTILCEDER---MDAEALSDLLVEAGALSASVEDADYGTAEESPIYDEPGEQVWRAMRAQVKL---------WK-RCKVTALFLGGWDVEGVMGLVKESFELEEAPRYKLGGVEDKDWVSEVQRNWPPILVGSLLLKFPWHSREELDALRAEMGVGESVPELLLEGGMAFGTGEHATTQLCCNWLQHKVGDGVRVLDYGAGSGILGMAALLFGAKEAIGVDIDRDSLVAAASNAEVNSLSQSFQCYVPSQ 261          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: L1JJW5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJW5_GUITC)

HSP 1 Score: 167 bits (424), Expect = 7.190e-45
Identity = 97/238 (40.76%), Postives = 136/238 (57.14%), Query Frame = 1
Query:  292 DAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTS--LPPSELKPGQV-ELELEGGRSFGTGEHPTTSMCCTWLEDNVAGE-----RVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYY 981
            D  G  +D   LSELLM+ GA+SV V+DAD GT  E+P+ +E                 GR + +  +  V A +P  WD+  V+  V + ++L     + VD+V D+DWVK VQ+ W PI +  L +RFPWH+   +    L+  ++ EL LEGG +FGTGEHPTT +CC WL+  +A E     RV+DYG+GSG+LGL +L FGA  AV       +I +A  NA  NG++    Y
Sbjct:  100 DENGRTIDADELSELLMETGALSVIVEDADRGTEQELPIFNE----------------PGRAERYWNNCNVTAFYPHGWDIPAVLEMVVKSMDLPVVPRYAVDEVRDQDWVKLVQQSWKPILIDHLLLRFPWHSKEDIDSVVLQDSEIHELMLEGGMAFGTGEHPTTRLCCRWLQQKLALEHGQRVRVMDYGAGSGVLGLTSLRFGAEAAV------DSIVAAHSNARLNGMESFKVY 315          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: W7TM81_9STRA (Ribosomal protein l11 methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM81_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.270e-42
Identity = 99/258 (38.37%), Postives = 142/258 (55.04%), Query Frame = 1
Query:  280 ISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELAS--PLSFKVDDVVDKDWVKTVQEGWDPIEVG-RLRIRFPWHTSLPPSELKPGQVELE------LEGGRSFGTGEHPTTSMCCTWLEDNVAGER------------VLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQE 990
              C +     +DPW LSELL++ GA S  ++DA   T  E P+  EH            P+ S +  +W   S V+A +  + D+  V++ ++E  +L +  P+ ++++ +VD+DW K VQE W P+ +G RL ++F WH       L   +  +E      LEGG +FG+GEHPTT MCC WL+ ++A E             V DYG+GSGIL +AAL FGA  A GVE+D+ AI SA  NA  NGL+M    P E
Sbjct:  126 FDCYEKDRMLIDPWLLSELLLETGAYSSQIEDAAKDTRDETPIFGEHGE----------PACSEK--IWN-RSLVMADYGLDVDVGSVLSLIKEAFQLGASYPVRYRLERIVDRDWQKEVQESWKPLLLGDRLLVKFTWHEEEDVKALLASRTAVEDVKVLALEGGAAFGSGEHPTTVMCCAWLQSHLAAESAKAGTDGGEGLSVCDYGAGSGILAMAALLFGAGTAFGVEIDVFAIQSAYRNAEMNGLQMAFVQPVE 370          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A401JDA2_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Sulfuriferula TaxID=1778653 RepID=A0A401JDA2_9PROT)

HSP 1 Score: 154 bits (390), Expect = 3.440e-41
Identity = 90/222 (40.54%), Postives = 135/222 (60.81%), Query Frame = 1
Query:  325 LSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVG-RLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAG-ERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYP 984
            LS+ LM+ GA+SVS++DA  GT  E P+  E        P +P+       ++W  ++ V+ALF +  D+A ++A   +      P +++++ V ++DWV+  Q  +DPI +  RL I   WH + P S      + L+L+ G +FGTG HPTT +C  WL++++AG ERVLDYG GSGIL +AAL FGA  A GV++D  A+A+A  NA NN ++ D Y P
Sbjct:   18 LSDALMEAGALSVSIEDAAAGTATEAPIFGE--------PGMPV------DELWRDNN-VLALFAQTADVAAILAEAAQTAGFTIP-AYRIEQVAEQDWVRLTQAEFDPIRISERLWIIPSWHAA-PDSAA----INLKLDPGLAFGTGSHPTTRLCLQWLDNHIAGGERVLDYGCGSGILAIAALKFGAGYACGVDIDAQAVATAQDNACNNAVQADFYLP 218          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A6T6NQS7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6NQS7_9RHOD)

HSP 1 Score: 153 bits (386), Expect = 2.730e-40
Identity = 89/233 (38.20%), Postives = 138/233 (59.23%), Query Frame = 1
Query:  274 LEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQ-VELELEGGRSFGTGEHPTTSMCCTWLEDNVAG-ERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLK 966
            ++IS  +  G +V+   LS+LLM++GA+SVSV+DA  GT AE PL HE       +  +P  +V G K  W   + V ALF  +  +  V+  V   L L     ++ + V ++DWV  VQ+ + PI++GR+ I FPWH+    + ++    V +++  G +FGTGEH TT +   WL+D + G E+VLDYG+GSG+L +A L  GA  A  VE+D  A++++  NA  N ++
Sbjct:    8 VDISGEEYDGVDVE--LLSDLLMELGAVSVSVEDALRGTDAEKPLFHEPLPGNGVEWIMPADAVGG-KTYWPKCT-VKALFTEDAAVESVIMTVGAELNLPRTPQYEAESVRNEDWVVKVQQSFKPIQIGRILITFPWHSDAETASMREASPVIIQMSPGMAFGTGEHWTTQLVLQWLQDAIEGDEKVLDYGAGSGVLAIAGLKLGAARARLVEIDQEALSTSQSNAERNTIE 236          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A6M8SQJ4_9NEIS (Ribosomal protein L11 methyltransferase n=3 Tax=unclassified Deefgea TaxID=2649748 RepID=A0A6M8SQJ4_9NEIS)

HSP 1 Score: 150 bits (380), Expect = 1.050e-39
Identity = 91/221 (41.18%), Postives = 129/221 (58.37%), Query Frame = 1
Query:  328 SELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVG-RLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAG-ERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYP 984
            S+ L D+GA+SVS++DA  GT AE P+  E        P  P+       D    +S VVALF  E D+A +V +  ++L+L +P SF++ +V D+DWV+  Q  +DPI +  RL I   WH    P+      V ++L+ G +FGTG HPTT +C  WL+ N+AG E VLDYG GSGIL ++AL  GA E  GV++D  A+ ++  NA  N +    Y P
Sbjct:   19 SDTLFDLGALSVSIEDAAAGTDAEKPIFGE--------PGEPV-------DQLWETSIVVALFDVEMDVATIVEHAAQILQLPAP-SFEIINVADQDWVRLTQSQFDPIPISPRLWITPTWHECPDPAA-----VSIQLDPGLAFGTGSHPTTRLCLQWLDSNLAGGENVLDYGCGSGILAISALKLGAGETDGVDIDAQAMIASRQNAEQNNVVAQFYLP 218          
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A4R3HUU2_PAULE (Ribosomal protein L11 methyltransferase n=1 Tax=Paucimonas lemoignei TaxID=29443 RepID=A0A4R3HUU2_PAULE)

HSP 1 Score: 151 bits (381), Expect = 1.190e-39
Identity = 94/227 (41.41%), Postives = 129/227 (56.83%), Query Frame = 1
Query:  325 LSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLE---LASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFP-WHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNV-AGERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQE 990
            LS+ LM+VGA+SVSV+DAD GT AE PL  E             P +   +  W   SRVVAL P E D A ++A  + + E     + L++ +  V D+DWV+  Q  ++PI +G+     P WH +  P+ L      LEL+ G +FGTG HPTT +C  WLE +  AG+ VLDYG GSGIL L A   GA E  GV++D  AI +A  N+  NG ++D + P +
Sbjct:   18 LSDALMEVGALSVSVEDADEGTDAERPLFGE-------------PGMEPEQTAWE-HSRVVALAPLEADHAALLAEAQALCEPPLQTAKLNYSLRSVADQDWVRLTQSQFEPIHIGKNIWVVPSWHDAPDPNALV-----LELDPGLAFGTGSHPTTRLCMEWLETHAPAGQSVLDYGCGSGILALVAKKLGAREVAGVDIDAQAIEAARHNSQRNGCEIDYFLPDD 225          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD6_ECTSI1.680e-22795.77Ribosomal protein L11 methyltransferase n=2 Tax=Ec... [more]
A0A835Z7L3_9STRA5.610e-7950.99Ribosomal protein L11 methyltransferase n=1 Tax=Tr... [more]
A0A6V1NRU4_HETAK8.040e-5236.95Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1HNT9_HEMAN5.010e-5043.60Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1JJW5_GUITC7.190e-4540.76Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
W7TM81_9STRA2.270e-4238.37Ribosomal protein l11 methyltransferase n=2 Tax=Mo... [more]
A0A401JDA2_9PROT3.440e-4140.54Ribosomal protein L11 methyltransferase n=2 Tax=Su... [more]
A0A6T6NQS7_9RHOD2.730e-4038.20Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6M8SQJ4_9NEIS1.050e-3941.18Ribosomal protein L11 methyltransferase n=3 Tax=un... [more]
A0A4R3HUU2_PAULE1.190e-3941.41Ribosomal protein L11 methyltransferase n=1 Tax=Pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1609contigEcto-sp13_S_contig1609:10554..16072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score638.6
Seed ortholog evalue1.6e-180
Seed eggNOG ortholog2880.D8LJD6
Model size993
KEGG koko:K03301
KEGG TC2.A.12
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2QQTZ@2759,COG2264@1
Ec32 ortholog descriptionribosomal protein L11 methyltransferase
Ec32 orthologEc-17_001920.1
Cds size993
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1609.4450.1prot_Ecto-sp13_S_contig1609.4450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1609 10554..16072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.2692778-CDS-Ecto-sp13_S_contig1609:10553..108431681462849.2692778-CDS-Ecto-sp13_S_contig1609:10553..10843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 10554..10843 +
1681462849.2839448-CDS-Ecto-sp13_S_contig1609:11738..118801681462849.2839448-CDS-Ecto-sp13_S_contig1609:11738..11880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 11739..11880 +
1681462849.294867-CDS-Ecto-sp13_S_contig1609:12424..125531681462849.294867-CDS-Ecto-sp13_S_contig1609:12424..12553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 12425..12553 +
1681462849.306645-CDS-Ecto-sp13_S_contig1609:12913..129881681462849.306645-CDS-Ecto-sp13_S_contig1609:12913..12988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 12914..12988 +
1681462849.3166199-CDS-Ecto-sp13_S_contig1609:13673..137631681462849.3166199-CDS-Ecto-sp13_S_contig1609:13673..13763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 13674..13763 +
1681462849.3265889-CDS-Ecto-sp13_S_contig1609:14557..146191681462849.3265889-CDS-Ecto-sp13_S_contig1609:14557..14619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 14558..14619 +
1681462849.33969-CDS-Ecto-sp13_S_contig1609:15026..151321681462849.33969-CDS-Ecto-sp13_S_contig1609:15026..15132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 15027..15132 +
1681462849.3492224-CDS-Ecto-sp13_S_contig1609:15973..160721681462849.3492224-CDS-Ecto-sp13_S_contig1609:15973..16072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1609 15974..16072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1609.4450.1

>prot_Ecto-sp13_S_contig1609.4450.1 ID=prot_Ecto-sp13_S_contig1609.4450.1|Name=mRNA_Ecto-sp13_S_contig1609.4450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=331bp
MITVWSQAFGWQAFLVSILILPSTPFVNHAHQLSSRSSSRSCAINRRRPS
PTTAMPRPLSSLATADADVNGAGQQSAVDELWWEEGGAVQSLEISCRDAK
GGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSV
PLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVD
DVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQVELELEGG
RSFGTGEHPTTSMCCTWLEDNVAGERVLDYGSGSGILGLAALSFGAVEAV
GVELDLSAIASAAVNAANNGLKMDTYYPQEV
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mRNA from alignment at Ecto-sp13_S_contig1609:10554..16072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1609.4450.1 ID=mRNA_Ecto-sp13_S_contig1609.4450.1|Name=mRNA_Ecto-sp13_S_contig1609.4450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1609:10554..16072+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCACTGTATGGAGCCAAGCATTCGGTTGGCAAGCATTCCTTGTATC GATCCTCATCCTTCCCTCGACACCATTCGTCAACCATGCCCACCAACTTT CCAGCAGGAGTAGCAGCAGGAGCTGTGCGATAAACAGACGTCGCCCGTCG CCTACAACCGCGATGCCACGCCCGTTGTCATCCCTTGCTACTGCTGATGC CGACGTAAATGGAGCCGGTCAGCAGTCGGCGGTGGATGAGCTTTGGTGGG AGGAAGGGGGTGCGGTGCAGTCGCTGGAGATCTCTTGCAGGTTGGTGTCG TCTGTTCAAGAGTGGAAAAATGTTGAACAATCGACTGCACCTTCAAATAC TGCTGTAGGATCGATGCATGTTCGGTGCAGGAGGGCGGACGTTTGACACA ATGTGTGTGGCGCTACATGCATGTAGACTATATCCTGTAGGCGGGAATGT CTTTTTCAAGAGCTTGCGACGTGCAACAAAGGGGGGGGGTACCTTGTCCG CACCACCCTGGATCCAACGCACTGCTGTGTTATATGGATGAGCAGTGTAG GTGTGACATAAGATACCCCACCCCCTTCCTCTGATTTTCAAAGCCGGAGA GGCGGTGCCGAAAATAGCCGCGTAGGAATCGTCCCGTCGAGAGTTTTCCG AAGACGTATCGTTTGAGTTATACATCCCTCTTCGTCGTGGAGTAATGGAT CTGTGAAAATCGATCCAGGTGGTGTGGCATCTTACGCGGCCTACGGTACA TAGATGATGGGTAGAGCTGATCACCGGGCTATGATACGTGGTACTCGGTA ATGTCATACAATTCGGCATGCATTATACGTTTTCCACCATGGTTGGAGAA GTATGCCATCCCCTGCACTGCGCCGTCTTGTACGGGTGTTACGACTCTCG AAGGCAATACTACATGTGTTGCTGTTGAAGGCTGTAAAGTTGGGGGCTGT CTTTGTGCCGGTAGGTGCCCACAGATTTGACGGCACGGCTGCATACCAGA CACCGGCACTACTCAAAGAAATGAATGCCGTGGCGATTCAGTCTGTGCCA GCGGAAAAGACCGGCACTGTATCGGGCACCGGCACTATTAAACCGGCACC CCCCACTGCACCTTCATTCTGCGGAACCACCGATCCCTTCTGAAGCAAGT TACGCATGCACCGACGGTGGCACCTTTGCTGACAGGGATGCGAAGGGGGG CGAGGTTGATCCGTGGTTTCTGAGCGAGCTCCTGATGGACGTGGGTGCGA TGTCGGTGTCTGTTGACGATGCGGACCTGGGCACGGGGGCCGAAGTCCCG CTACTGCACGAGCACACCAACTCGAAGGTGCGGGCGCCCACCACACGCCA CGCCCTTTGTCCTCGTCCGCAGGATGTGCCGTGCTACTGCAAAGGAAGGC ACCAACACCATACCGTGCATAATACCACATGTCTTGAACAACAAACATCG CGCAAGGCTTGCCATCGCGCAAGGGGTGACGTCGGAATTTTTGAAGTTGG GCCGTGAAATTATGCTCCTCTTTGTCGCACTGCTGTGCACTGTCATCAGC TTGTTTCGTCATAAGGACAACAGGTAGGCTACAGCAGCAACAGTTTTCTA AGAGTAGAGTTGTTGTTCCCCAGTCGAATCAGGGCACATGTCCACGATCA ACCGAACCACCAAGAAGGCGCTGTGCAGTATAGCGCGTGATGTGGTGTAC AGGTGCATGCACATACCACTTGGTGAACTAGTTCTACTGCCGTTTCACGT CTCGCCTTCACCGACGGCTGGCGCACACTTGTCCCCAGTACGAATGTGCA CGAATTCTTTTGCGCAGTGCCTGCGTCTGCGTGCAACCATAGACAACCGT GTGCTCGTCGTTAATTACCAGGCATTCGACCCGAGCGTCCCCTTACCGTC AGTCTCCGGGAGGAAAGACATGTGGGGGGGCAGCAGTCGGGTCGTGGCGC TCTTCCCGAGAGAATGGGACTTAGCCGGAGTCGTGGCTAACGTCGAAGAG GTGAGCCAGGAGTGACTTATGCCGAAGCGAACAACCCTGCGATTGGCTCA TACTCTGACGGCCGCCTCTCACAAAACAAGGAGACGGGAAAAGGGGATGT GCCAGCTGGTACACATGATACGGAAGCGACACTTTCAAGTAGTTTCATAT GAGATCCGCCGCTCTCCGTAACCCGTTCGATCCTACTGTTCCCGGGAGAA TTGAAGTTGGTTGGGGTCGTCGTGGCCATCACCGCCTGGGCGTACGTTGC TCGTGCCTTCTTGATCCATCGTCGTCTACGTGGGACGCTACGCCTGCACA CGGTCGACATCGGCTGCTGAACGATTGTCTCGTATCCATACTCCACACTG TACTGCAAAGGTGCTAGAGCTGGCCTCTCCGCTGTCTTTCAAAGTGGATG ATGTCGTGGACAAGGATTGGGTCAAGACCGTTCAGGTGCGTGGCCTTGGT GCTTCTCTCTCCCTCTCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT CTCTCCCTCCCACCCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTCCTCT CTCCTGGTGTCTGTCTGTCGTTCTGCCCCTGGCTGCCTGTGTAACTATTG CTGCTGACACCGGCTTGACACATTACACCTTTTGCTAAGTCAATTTATTT TGACCATCCTGAATCGAGCACGAGTTCCTCACTTGATTGAGCCGTGATTT GCCTCTCCGGAATACTTCTGTAGGGTTTCTTTTTTGCCGGATCCCACCAA CCGGTAGTAGGTTAACCGATCATGTGCATACCCGGCTGGGAGTCAACAGA GCCAGAGACATGCAGAGCCAAGCCCTTCATCATCTTGACTTGTTTTTACC ATGTATGTCGCGGCATGATGTTGCCAAAACCGATCGCAATTCCGGCCAGA AAAAGTGTTCTTCGAGAAAAAATTACCGGTGCGGGCGTCGGCTTAGCTGT AGGTTGTAGAAAGAGGGCTTATGCTTGCGTTTGGATTGTTCTTGCAGTGT AGTCCTGACGACCAGCCGATGCTTGCCCGTTTCGTCTCACGTGTCGTTTC ACGTGCCGTTTCATGTGCCGTTTCGCGTGCCGTTTCGTGTGCCGTTTCGT GTGCCGTTGTGTCATCGCAGGAAGGCTGGGACCCCATCGAGGTCGGACGG TTACGCATTCGATTTCCGTGGCACACCTCCCTTCCCCCCTCCGAGCTCAA GCCTGGCCAGGTGTGTTAGCGAGTCACTTGACCGCGTTGAAGAGGTGAAC TTACCTTTGCTTTTTCTGGTCGCAGTTTGCGATTCCATGCGGAATTGACG TTCTGTTTTCGTGCTTGGCAAAGGAAAAATAACGCTTGGACCGGTACCGA GGGCGACGTCCGTAGAAATACACAAGGACCTATGCGCCGCAGTGGAGGCT AATTCGATTGAAATCGTTTGGCAGAAACAGCAACGCTATGTGCTTCCCAG TCAGTATGCGCTGCAACGGTCAGTCATAGCCTTTACCGCGTTTCTACTGC TGTGCGTCGTGCTGGAGTTGTGCTGCGATAGGGCAGGATTTATTTTTTTT GCCGTTTGGCACTCGGGTCCGACAACAACTGGTTAATTTGGCGTTGTTTT ATCCGCTGGGAACCATCTTTTCCATTTCCATATTTATTTTAGTGGTGAGA TCCATCGTAATTTGTTTTTCAACTCTTGTAAAACCTATAAAGAAATCAAC AATTGGTTGACAAAATGCGTTTCATAATCCGGATGATGGTTCCAACGATT GTACGAAAAAATCACCAATCCGTTTAAACACTTTCCACCTGATAAGTTCT TCATCATTTTGTCTTAGAAGAAGCGGCTCGAAAATCGTACCTAGTAGGCC TGAAGAGCAGCGCGGGGGGGCCAGCCCAGCCGCAGTGGCACATGTAGTGC GTCTGAATGCCCGTGGGCTTAGTTCGTGTTCCGCTACTTTCGATGTTTGT TGTTTTTTTCTCGTTTAAGTTGATGTGATTCTCTGCGCTCTCTTTTGCTG ACAGGTGGAGCTAGAGCTAGAGGGAGGGAGGTCCTTTGGGACAGGCGAGC ATCCGACAACCTCCATGTGCGTGTGTACCGGCGTCTCTTGCACAAGCGAT TACTAAACCAGAGCAACAGGAAGTGTTTGCAAGAGAAATTCAGGAGTGTT CCTAGAAGACAATGGCTCGCCTGGGCTTTGGCGCGGTTTCATTTCACGCG TGTGTACCCATCCGAAGTTCAGAGGGACTCGGCGTTTGGAGCGAGAGCTG GCGACATCCCGTGCGTGCCTCACTCGAACCCAAGCCGCGACAGAAAACAC AGCTATACCGCACGTACGTCACACAGCTAGACCGGAGGCGCAGTCGAGCA AACTACCAACCATAGCAAACGAGATACGCTTGCCGCTGCACTACTGTGTT TGTCCGAAGGTGTAGCGAGCGAGGAAGCTGACTGTGTTGCTATGCGGCTG TTATCTCTCACCATTGTCACCAGGTGCTGCACGTGGCTGGAGGATAACGT TGCCGGAGAGCGGGTGTTGGACTACGGTAGCGGCAGCGGAATATTGGGAC TGGCGGCGCTCTCCTTTGGCGCCGTGGAGGTGTGTGTTGTGTGTTTCGTC CTACTTATCATAGCAACAGTCCCCCCATTTTTCGTGGTGAGACGTGTACT GCACTGTTCAGTGTATTTTTTCGTAAATTTACAACCAGCCAGGGTCATGT AAGAGGGGGTCAACACCAGGGATTTTTTTCTTCTTTTTGTTTATTTTCGT GCCCCACCTTCCTCCTGCGGTGCGTGCTGATTTTTTTTTTGTATTGGGGG AAGGGCCAAGCCGTCCCTTTCCCTCGTCAACGGTGCTAACGTCGAAGTTT AGTACCCACGAGAGCTTTCCAGCTTATTTCTCGCTTCCACCGGCACATTT TGCATTTTTTTCAGGATTGAAACTCACGACCTTTGCGACTACTGTAGCGG TATCAAGGATACCACTCGACCATCGGGGCGACCGGAGGGAGGATCGGAAA TTCCCCTTGCCACGAACCCGTTTTTTTTACTTGCGTGGAATACTTTGGAT CCTGGTCGACCACTGCTGTGTTCCGTGCTGCAACGACTTGCACTGAGCTT GGGTTCACTCCAATCTGCTCCTACCCACCTTCTCTCTTCGTTATTCTCCT TCATTTTACTGCTGATGAGCCTCTGTCGGTAGTCAGGCGGGGCGCTAGCA CGGCCGCTTTCTTTAGGCAAATCGACAAGGGACCGTGTCAGGCGCTGATG TTTACAATGTTTGCCCTTGTTGTTGAATCCTACAGCGTACGTCTCCACAA AAGGACGAATGTGCCTCGACCGTAGCCAGTAAACCGTGTGATATCTACCA CCCAAAAGATTCACCTCCTCCGATTTACCCTCTCCTTCTCGTTTCCCCTG TTTCGTGGACGACTGCGAAGGCCGTTGGCGTAGAGCTCGACCTGAGTGCC ATCGCCAGTGCTGCAGTAAATGCTGCAAATAACGGCCTCAAAATGGACAC CTATTATCCCCAAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1609:10554..16072+

>mRNA_Ecto-sp13_S_contig1609.4450.1 ID=mRNA_Ecto-sp13_S_contig1609.4450.1|Name=mRNA_Ecto-sp13_S_contig1609.4450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1609:10554..16072+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCACTGTATGGAGCCAAGCATTCGGTTGGCAAGCATTCCTTGTATC
GATCCTCATCCTTCCCTCGACACCATTCGTCAACCATGCCCACCAACTTT
CCAGCAGGAGTAGCAGCAGGAGCTGTGCGATAAACAGACGTCGCCCGTCG
CCTACAACCGCGATGCCACGCCCGTTGTCATCCCTTGCTACTGCTGATGC
CGACGTAAATGGAGCCGGTCAGCAGTCGGCGGTGGATGAGCTTTGGTGGG
AGGAAGGGGGTGCGGTGCAGTCGCTGGAGATCTCTTGCAGGGATGCGAAG
GGGGGCGAGGTTGATCCGTGGTTTCTGAGCGAGCTCCTGATGGACGTGGG
TGCGATGTCGGTGTCTGTTGACGATGCGGACCTGGGCACGGGGGCCGAAG
TCCCGCTACTGCACGAGCACACCAACTCGAAGGCATTCGACCCGAGCGTC
CCCTTACCGTCAGTCTCCGGGAGGAAAGACATGTGGGGGGGCAGCAGTCG
GGTCGTGGCGCTCTTCCCGAGAGAATGGGACTTAGCCGGAGTCGTGGCTA
ACGTCGAAGAGGTGCTAGAGCTGGCCTCTCCGCTGTCTTTCAAAGTGGAT
GATGTCGTGGACAAGGATTGGGTCAAGACCGTTCAGGAAGGCTGGGACCC
CATCGAGGTCGGACGGTTACGCATTCGATTTCCGTGGCACACCTCCCTTC
CCCCCTCCGAGCTCAAGCCTGGCCAGGTGGAGCTAGAGCTAGAGGGAGGG
AGGTCCTTTGGGACAGGCGAGCATCCGACAACCTCCATGTGCTGCACGTG
GCTGGAGGATAACGTTGCCGGAGAGCGGGTGTTGGACTACGGTAGCGGCA
GCGGAATATTGGGACTGGCGGCGCTCTCCTTTGGCGCCGTGGAGGCCGTT
GGCGTAGAGCTCGACCTGAGTGCCATCGCCAGTGCTGCAGTAAATGCTGC
AAATAACGGCCTCAAAATGGACACCTATTATCCCCAAGAGGTG
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