mRNA_Ecto-sp13_S_contig1609.4450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: D8LJD6_ECTSI (Ribosomal protein L11 methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD6_ECTSI) HSP 1 Score: 634 bits (1636), Expect = 1.680e-227 Identity = 317/331 (95.77%), Postives = 322/331 (97.28%), Query Frame = 1
Query: 1 MITVWSQAFGWQAFLVSILILPSTPFVNHAHQLSSRSSSRSCAINRRRPSPTTAMPRPLSSLATADADVNGAGQQSAVDELWWEEGGAVQSLEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAGERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 993
MITVWSQA WQAFLVS LILPSTPFVNHAHQL SRSSSRSCA+NRRRPSPTTA+PRPL SLATADADVN AGQQSAVDELWWEEGGAVQSLEI+CRDAKG E+DPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVA VEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHT LPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAG+RVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV
Sbjct: 1 MITVWSQASSWQAFLVSSLILPSTPFVNHAHQLPSRSSSRSCAMNRRRPSPTTAIPRPLPSLATADADVNAAGQQSAVDELWWEEGGAVQSLEIACRDAKGSELDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVATVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTPLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAGQRVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 331
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A835Z7L3_9STRA (Ribosomal protein L11 methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L3_9STRA) HSP 1 Score: 256 bits (653), Expect = 5.610e-79 Identity = 129/253 (50.99%), Postives = 168/253 (66.40%), Query Frame = 1
Query: 244 WWEEGGAVQSLEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVA---GERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 993
WW E +++L I C D KG +D L L +VGA+SV+ +DA GT E+PLLHEH S + + +++ + W ++ V A FPR+W+L G + +E+V L LSF VDD+ DKDWVK+VQ+ W PI +G LRIRFPWH +L GQVEL LEGGR+FGTGEHPTT MCCTWLE + G RVLDYGSGSG+LGLAAL +GA EA+G+E+D+ AI S+ NA N L + Y+P+EV
Sbjct: 59 WWGEDTQLKALRIPCSDCKGNVLDAGTLMGFLSEVGALSVTAEDAARGTDQEIPLLHEHDASLGLETTWT--NIASGSEYWANTT-VTAHFPRDWELQGTIDMIEQVFNLPCALSFSVDDIQDKDWVKSVQQTWHPITLGNLRIRFPWHDALNEDSAGTGQVELCLEGGRAFGTGEHPTTRMCCTWLERCLQVSPGARVLDYGSGSGLLGLAALKYGASEAIGIEVDVDAILSSLYNAQMNDLDIKFYHPREV 308
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A6V1NRU4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRU4_HETAK) HSP 1 Score: 187 bits (475), Expect = 8.040e-52 Identity = 109/295 (36.95%), Postives = 157/295 (53.22%), Query Frame = 1
Query: 265 VQSLEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEH-TNSKAFDPSVPLP------------SVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSE-----------------LKPGQVELELE------------------GGRSFGTGEHPTTSMCCTWLEDNVA----GERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQEV 993
+++L I CRD G ++DP LS+ LM++GA SVS++D++ GT AE P+ E T FD + L + + + +W +SRVVA P W+ VV V ELA +F+V+D+ D+DWV VQE W P+ +G +R++FPWH+ LP E +KP + E GG +FGTG+HPTT MC W+++ G +LDYG+GSGILG+ A+ FG VGVE+D AI +A NA N L+M+ Y P+E+
Sbjct: 82 LKALVIECRDDSGNDLDPSLLSDFLMEIGACSVSIEDSNRGTAAETPVYREPPTGGVVFDGADTLAGTPTGALQATAAAAAAPRPLWA-ASRVVAHLPAAWNSEEVVMLVGATFELAVLPAFRVEDIQDRDWVSAVQENWQPMILGSVRVKFPWHSDLPAEEGVTDILLQGSFQSVEEVVKPIADQSRRERAAARMAATRKTYSKGAAGGAAFGTGDHPTTRMCARWVQEQAQRARPGTTLLDYGAGSGILGMIAMKFGIQRVVGVEIDRDAIRTAIENAKLNKLEMEFYLPEEI 375
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A7S1HNT9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HNT9_HEMAN) HSP 1 Score: 177 bits (448), Expect = 5.010e-50 Identity = 109/250 (43.60%), Postives = 143/250 (57.20%), Query Frame = 1
Query: 274 LEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNS--KAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHT----SLPPSELKPGQV--ELELEGGRSFGTGEHPTTSMCCTWLEDNVA-GERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMD--TYYPQE 990
+ I C D + +D LS+LL++ GA+S SV+DAD GT E P+ E +A V L W +V ALF WD+ GV+ V+E EL +K+ V DKDWV VQ W PI VG L ++FPWH+ +E+ G+ EL LEGG +FGTGEH TT +CC WL+ V G RVLDYG+GSGILG+AAL FGA EA+GV++D ++ +AA NA N L Y P +
Sbjct: 25 VTILCEDER---MDAEALSDLLVEAGALSASVEDADYGTAEESPIYDEPGEQVWRAMRAQVKL---------WK-RCKVTALFLGGWDVEGVMGLVKESFELEEAPRYKLGGVEDKDWVSEVQRNWPPILVGSLLLKFPWHSREELDALRAEMGVGESVPELLLEGGMAFGTGEHATTQLCCNWLQHKVGDGVRVLDYGAGSGILGMAALLFGAKEAIGVDIDRDSLVAAASNAEVNSLSQSFQCYVPSQ 261
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: L1JJW5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJW5_GUITC) HSP 1 Score: 167 bits (424), Expect = 7.190e-45 Identity = 97/238 (40.76%), Postives = 136/238 (57.14%), Query Frame = 1
Query: 292 DAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTS--LPPSELKPGQV-ELELEGGRSFGTGEHPTTSMCCTWLEDNVAGE-----RVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYY 981
D G +D LSELLM+ GA+SV V+DAD GT E+P+ +E GR + + + V A +P WD+ V+ V + ++L + VD+V D+DWVK VQ+ W PI + L +RFPWH+ + L+ ++ EL LEGG +FGTGEHPTT +CC WL+ +A E RV+DYG+GSG+LGL +L FGA AV +I +A NA NG++ Y
Sbjct: 100 DENGRTIDADELSELLMETGALSVIVEDADRGTEQELPIFNE----------------PGRAERYWNNCNVTAFYPHGWDIPAVLEMVVKSMDLPVVPRYAVDEVRDQDWVKLVQQSWKPILIDHLLLRFPWHSKEDIDSVVLQDSEIHELMLEGGMAFGTGEHPTTRLCCRWLQQKLALEHGQRVRVMDYGAGSGVLGLTSLRFGAEAAV------DSIVAAHSNARLNGMESFKVY 315
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: W7TM81_9STRA (Ribosomal protein l11 methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM81_9STRA) HSP 1 Score: 162 bits (410), Expect = 2.270e-42 Identity = 99/258 (38.37%), Postives = 142/258 (55.04%), Query Frame = 1
Query: 280 ISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELAS--PLSFKVDDVVDKDWVKTVQEGWDPIEVG-RLRIRFPWHTSLPPSELKPGQVELE------LEGGRSFGTGEHPTTSMCCTWLEDNVAGER------------VLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQE 990
C + +DPW LSELL++ GA S ++DA T E P+ EH P+ S + +W S V+A + + D+ V++ ++E +L + P+ ++++ +VD+DW K VQE W P+ +G RL ++F WH L + +E LEGG +FG+GEHPTT MCC WL+ ++A E V DYG+GSGIL +AAL FGA A GVE+D+ AI SA NA NGL+M P E
Sbjct: 126 FDCYEKDRMLIDPWLLSELLLETGAYSSQIEDAAKDTRDETPIFGEHGE----------PACSEK--IWN-RSLVMADYGLDVDVGSVLSLIKEAFQLGASYPVRYRLERIVDRDWQKEVQESWKPLLLGDRLLVKFTWHEEEDVKALLASRTAVEDVKVLALEGGAAFGSGEHPTTVMCCAWLQSHLAAESAKAGTDGGEGLSVCDYGAGSGILAMAALLFGAGTAFGVEIDVFAIQSAYRNAEMNGLQMAFVQPVE 370
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A401JDA2_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Sulfuriferula TaxID=1778653 RepID=A0A401JDA2_9PROT) HSP 1 Score: 154 bits (390), Expect = 3.440e-41 Identity = 90/222 (40.54%), Postives = 135/222 (60.81%), Query Frame = 1
Query: 325 LSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVG-RLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAG-ERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYP 984
LS+ LM+ GA+SVS++DA GT E P+ E P +P+ ++W ++ V+ALF + D+A ++A + P +++++ V ++DWV+ Q +DPI + RL I WH + P S + L+L+ G +FGTG HPTT +C WL++++AG ERVLDYG GSGIL +AAL FGA A GV++D A+A+A NA NN ++ D Y P
Sbjct: 18 LSDALMEAGALSVSIEDAAAGTATEAPIFGE--------PGMPV------DELWRDNN-VLALFAQTADVAAILAEAAQTAGFTIP-AYRIEQVAEQDWVRLTQAEFDPIRISERLWIIPSWHAA-PDSAA----INLKLDPGLAFGTGSHPTTRLCLQWLDNHIAGGERVLDYGCGSGILAIAALKFGAGYACGVDIDAQAVATAQDNACNNAVQADFYLP 218
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A6T6NQS7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6NQS7_9RHOD) HSP 1 Score: 153 bits (386), Expect = 2.730e-40 Identity = 89/233 (38.20%), Postives = 138/233 (59.23%), Query Frame = 1
Query: 274 LEISCRDAKGGEVDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFPWHTSLPPSELKPGQ-VELELEGGRSFGTGEHPTTSMCCTWLEDNVAG-ERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLK 966
++IS + G +V+ LS+LLM++GA+SVSV+DA GT AE PL HE + +P +V G K W + V ALF + + V+ V L L ++ + V ++DWV VQ+ + PI++GR+ I FPWH+ + ++ V +++ G +FGTGEH TT + WL+D + G E+VLDYG+GSG+L +A L GA A VE+D A++++ NA N ++
Sbjct: 8 VDISGEEYDGVDVE--LLSDLLMELGAVSVSVEDALRGTDAEKPLFHEPLPGNGVEWIMPADAVGG-KTYWPKCT-VKALFTEDAAVESVIMTVGAELNLPRTPQYEAESVRNEDWVVKVQQSFKPIQIGRILITFPWHSDAETASMREASPVIIQMSPGMAFGTGEHWTTQLVLQWLQDAIEGDEKVLDYGAGSGVLAIAGLKLGAARARLVEIDQEALSTSQSNAERNTIE 236
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A6M8SQJ4_9NEIS (Ribosomal protein L11 methyltransferase n=3 Tax=unclassified Deefgea TaxID=2649748 RepID=A0A6M8SQJ4_9NEIS) HSP 1 Score: 150 bits (380), Expect = 1.050e-39 Identity = 91/221 (41.18%), Postives = 129/221 (58.37%), Query Frame = 1
Query: 328 SELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLELASPLSFKVDDVVDKDWVKTVQEGWDPIEVG-RLRIRFPWHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNVAG-ERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYP 984
S+ L D+GA+SVS++DA GT AE P+ E P P+ D +S VVALF E D+A +V + ++L+L +P SF++ +V D+DWV+ Q +DPI + RL I WH P+ V ++L+ G +FGTG HPTT +C WL+ N+AG E VLDYG GSGIL ++AL GA E GV++D A+ ++ NA N + Y P
Sbjct: 19 SDTLFDLGALSVSIEDAAAGTDAEKPIFGE--------PGEPV-------DQLWETSIVVALFDVEMDVATIVEHAAQILQLPAP-SFEIINVADQDWVRLTQSQFDPIPISPRLWITPTWHECPDPAA-----VSIQLDPGLAFGTGSHPTTRLCLQWLDSNLAGGENVLDYGCGSGILAISALKLGAGETDGVDIDAQAMIASRQNAEQNNVVAQFYLP 218
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Match: A0A4R3HUU2_PAULE (Ribosomal protein L11 methyltransferase n=1 Tax=Paucimonas lemoignei TaxID=29443 RepID=A0A4R3HUU2_PAULE) HSP 1 Score: 151 bits (381), Expect = 1.190e-39 Identity = 94/227 (41.41%), Postives = 129/227 (56.83%), Query Frame = 1
Query: 325 LSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWDLAGVVANVEEVLE---LASPLSFKVDDVVDKDWVKTVQEGWDPIEVGRLRIRFP-WHTSLPPSELKPGQVELELEGGRSFGTGEHPTTSMCCTWLEDNV-AGERVLDYGSGSGILGLAALSFGAVEAVGVELDLSAIASAAVNAANNGLKMDTYYPQE 990
LS+ LM+VGA+SVSV+DAD GT AE PL E P + + W SRVVAL P E D A ++A + + E + L++ + V D+DWV+ Q ++PI +G+ P WH + P+ L LEL+ G +FGTG HPTT +C WLE + AG+ VLDYG GSGIL L A GA E GV++D AI +A N+ NG ++D + P +
Sbjct: 18 LSDALMEVGALSVSVEDADEGTDAERPLFGE-------------PGMEPEQTAWE-HSRVVALAPLEADHAALLAEAQALCEPPLQTAKLNYSLRSVADQDWVRLTQSQFEPIHIGKNIWVVPSWHDAPDPNALV-----LELDPGLAFGTGSHPTTRLCMEWLETHAPAGQSVLDYGCGSGILALVAKKLGAREVAGVDIDAQAIEAARHNSQRNGCEIDYFLPDD 225 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1609.4450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1609.4450.1 >prot_Ecto-sp13_S_contig1609.4450.1 ID=prot_Ecto-sp13_S_contig1609.4450.1|Name=mRNA_Ecto-sp13_S_contig1609.4450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=331bp MITVWSQAFGWQAFLVSILILPSTPFVNHAHQLSSRSSSRSCAINRRRPSback to top mRNA from alignment at Ecto-sp13_S_contig1609:10554..16072+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1609.4450.1 ID=mRNA_Ecto-sp13_S_contig1609.4450.1|Name=mRNA_Ecto-sp13_S_contig1609.4450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1609:10554..16072+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1609:10554..16072+ >mRNA_Ecto-sp13_S_contig1609.4450.1 ID=mRNA_Ecto-sp13_S_contig1609.4450.1|Name=mRNA_Ecto-sp13_S_contig1609.4450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1609:10554..16072+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |