mRNA_Ecto-sp13_S_contig16088.4449.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16088.4449.1
Unique NamemRNA_Ecto-sp13_S_contig16088.4449.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16088.4449.1 vs. uniprot
Match: D7FYC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC3_ECTSI)

HSP 1 Score: 933 bits (2412), Expect = 0.000e+0
Identity = 486/538 (90.33%), Postives = 499/538 (92.75%), Query Frame = 1 
Query:    1 VWRSNSNVCRLFRLPPLVYDGDGGKRQTVDEDNNDGGVESSRTGTAAASSGFESADKTGIGSEGSLAAKYDICRLPFVEWVLPSPITVLAVCEEEVMGEAQDDGREKGGGWSCCGGADATAPLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTVTDPTGAGGDRCCVGGTPRLRCLHDARGSGIVRLACFREIPLAVAEDTSRRVVVYDLLSGSMLGVLALKDDAIASVAADGPDRSGDGAAVSHETDVPKAGIVWSEGGEYIAAIMPQKQDTSILSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSSRDVAELFYGLPPRERKDPDFMLQNMSHQYDPRRGDTTPPTTGTTNPDPTSTRTKAGGRSSRGTGSGSGRADRSNTPQRPAARDGVAGKKAPSNTVSTNATRNPITRTPPHYQRPTTLTERNVACLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYMAARHTDRAARQARLEYVTRNLLQAL 1614
            VWRSNSNVCRLFRLPP VYDGDGG+RQTV+  NNDGGVE SRTGT AASSGFESADKTGIGSEGSLAAKYDI RLP VEWVLPSPITVLAVCEEE  GEAQDDGREKGGGWSCCGGADA APLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTV DPTGAGGDR CVGGTPRLRCLHDARGSGIVRLACFRE+PLAVAEDTS RVVVYDLLSG+MLGVLALKDDAI SVAAD PDR+GDGAAVSHET  PKAGI+WSEGGE +A +MPQ+Q+TS+LSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLS RDVAELFYGL PR RKDP+ MLQNMSHQYDP RGDT P TTGTTNPDP STRTKAGGRSSRGTGSGSGR DRSNTPQR A RD VA KKAPSNTVSTN TRNP TRTPPHYQ PTTLTERNVA LLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYM ARHT+RA RQARLE VTRNLLQAL
Sbjct:  621 VWRSNSNVCRLFRLPPPVYDGDGGQRQTVEGGNNDGGVELSRTGTVAASSGFESADKTGIGSEGSLAAKYDISRLPSVEWVLPSPITVLAVCEEETGGEAQDDGREKGGGWSCCGGADAPAPLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTVADPTGAGGDRRCVGGTPRLRCLHDARGSGIVRLACFREMPLAVAEDTSGRVVVYDLLSGTMLGVLALKDDAITSVAADRPDRNGDGAAVSHETVAPKAGIIWSEGGECMAVVMPQEQETSVLSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSPRDVAELFYGLLPRYRKDPEIMLQNMSHQYDPGRGDTAPLTTGTTNPDPASTRTKAGGRSSRGTGSGSGRLDRSNTPQRAAGRDRVAAKKAPSNTVSTNVTRNPTTRTPPHYQHPTTLTERNVARLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYMEARHTERAVRQARLENVTRNLLQAL 1158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16088.4449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYC3_ECTSI0.000e+090.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16088contigEcto-sp13_S_contig16088:2..3196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1617
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-09_001350.1
Cds size1617
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.2061186-CDS-Ecto-sp13_S_contig16088:1..4891681462849.2061186-CDS-Ecto-sp13_S_contig16088:1..489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16088 2..489 +
1681462849.214827-CDS-Ecto-sp13_S_contig16088:934..11241681462849.214827-CDS-Ecto-sp13_S_contig16088:934..1124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16088 935..1124 +
1681462849.2228386-CDS-Ecto-sp13_S_contig16088:1574..17901681462849.2228386-CDS-Ecto-sp13_S_contig16088:1574..1790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16088 1575..1790 +
1681462849.230833-CDS-Ecto-sp13_S_contig16088:1995..21781681462849.230833-CDS-Ecto-sp13_S_contig16088:1995..2178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16088 1996..2178 +
1681462849.2385325-CDS-Ecto-sp13_S_contig16088:2656..31961681462849.2385325-CDS-Ecto-sp13_S_contig16088:2656..3196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16088 2657..3196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16088.4449.1prot_Ecto-sp13_S_contig16088.4449.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16088 2..3196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16088.4449.1

>prot_Ecto-sp13_S_contig16088.4449.1 ID=prot_Ecto-sp13_S_contig16088.4449.1|Name=mRNA_Ecto-sp13_S_contig16088.4449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=539bp
VWRSNSNVCRLFRLPPLVYDGDGGKRQTVDEDNNDGGVESSRTGTAAASS
GFESADKTGIGSEGSLAAKYDICRLPFVEWVLPSPITVLAVCEEEVMGEA
QDDGREKGGGWSCCGGADATAPLVAIGTENGGVYLGDAALGTTRAGLSRH
RARVTALAFHGKRFLVSGSDDEMIQIHHLTVTDPTGAGGDRCCVGGTPRL
RCLHDARGSGIVRLACFREIPLAVAEDTSRRVVVYDLLSGSMLGVLALKD
DAIASVAADGPDRSGDGAAVSHETDVPKAGIVWSEGGEYIAAIMPQKQDT
SILSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSSRDVAELF
YGLPPRERKDPDFMLQNMSHQYDPRRGDTTPPTTGTTNPDPTSTRTKAGG
RSSRGTGSGSGRADRSNTPQRPAARDGVAGKKAPSNTVSTNATRNPITRT
PPHYQRPTTLTERNVACLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWG
MEVGAAARVKRYMAARHTDRAARQARLEYVTRNLLQAL*
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mRNA from alignment at Ecto-sp13_S_contig16088:2..3196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16088.4449.1 ID=mRNA_Ecto-sp13_S_contig16088.4449.1|Name=mRNA_Ecto-sp13_S_contig16088.4449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16088:2..3196+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTGGAGGTCGAACTCCAACGTATGCCGGCTTTTTCGCCTGCCGCCGCT
GGTGTACGACGGTGATGGGGGGAAACGGCAGACCGTGGACGAGGACAATA
ACGACGGCGGCGTAGAGTCATCCCGTACGGGTACCGCTGCGGCCAGTAGC
GGGTTCGAGAGTGCCGACAAGACAGGCATCGGCAGTGAGGGCTCGCTGGC
GGCAAAGTACGACATATGCCGCCTGCCGTTTGTGGAGTGGGTCTTGCCGT
CCCCAATCACAGTTCTCGCGGTCTGCGAAGAGGAAGTAATGGGGGAGGCT
CAGGACGACGGCCGTGAGAAGGGCGGGGGGTGGAGCTGTTGCGGTGGAGC
CGACGCGACGGCCCCGCTCGTCGCCATCGGGACTGAAAACGGAGGAGTTT
ACCTGGGAGATGCGGCGCTGGGAACGACAAGGGCGGGGCTGTCAAGGCAC
CGTGCTCGGGTCACCGCTCTGGCGTTCCACGGGAAAAGGTGAGAGAATGC
AATGGGATACACAGTCAGAGGCCGAGAAGACAAGGAAAAAACAAGCAAAC
AAACAAACAAGTTGACGGTTCTGCGAAAGTTTAACGCGACGACGGCACCG
CCAACACGCGGTGGCCCGTTGTCGATCCTCCGAGGGTAGTTCTTGCAGGC
TTCAACCACCTTCCGTGGATGAGTTTAGTTTCATACGTTGACAAGCATCC
ATCCCCGTCAGCGACGAGCTCTTGCCAACGTTCTCACAGACGCCTGGTCC
CAAATGAACTAGGGTTTATTTTGGTTGGTAACTGGCATGCTCGTAGAACG
ACACGATTTGACATGTGCTGCGGCAAAATCTACTTTTCCGCTGAAGAACG
CACGGCAGCATTAAAATGTCATGTGTTTTGTAATCCTGTCTTTTGGCTTC
GGCGGTGACGTGGCTGGCGCAACTCTTTCGCAGATTTCTCGTCTCTGGCA
GCGATGACGAGATGATCCAGATCCACCACTTGACCGTCACCGATCCAACC
GGAGCTGGTGGAGACAGGTGCTGTGTCGGCGGGACCCCGCGTTTGCGATG
CCTGCACGACGCGCGAGGCAGCGGGATTGTTCGATTGGCGTGTTTCCGAG
AGATACCCCTAGCAGTCGCCGAGGTGATGAGCGTGTGACAAAGAGTAGAC
GGGACCAGGTCGAGTGACAACTTTCGTTCGTTGACTGCAGAGGACGAATT
GTGGCTGGGTCAACCATCGGAGGGAAATCGTTTGGAATCTATCTGCGGCC
GAGGCCCAGTGTTGCGTTGAGGAGCGGAGTGCGCGAGGAAGTTTGTAATG
GTTGATATAGGGACGGCGTGATGTTTTCATTTCGGCATGTTTAGACAAGA
ATCGTTGGCTTTCCCGCTTGTGGTTTCGAGTGGAACTAACGCATTGCGAT
TTGCATCACGAAAAGGCACACTACGCCACTGGACGATTTCACAACGCGTT
TTGTGTGTGGTCTTGGCCCAGTGGTACTCAAAGGAAGCTGGTCGCGCGAC
GACGTAGCCACGGCGGATAAAATAGCAGTATTCAACTATCACGCCCCGGT
GGCTGCCCGTTACTTTTCCACAGGATACCTCTAGGCGGGTGGTTGTATAC
GACCTACTCTCGGGGAGCATGCTCGGTGTGCTGGCCTTGAAGGATGATGC
CATCGCCAGTGTCGCTGCTGATGGGCCAGACAGGAGCGGCGACGGGGCCG
CTGTGTCGCATGAAACTGACGTGCCGAAAGCAGGCATTGTTTGGTCGGAA
GGCGGAGAGTACATAGCGGCGATCATGCCACAAAAGCAGGTAAGTTGGTG
TTGCGTAGCGGGGGGCAGATCACCATAAAATATCCAGAGAAACAGCAGTC
TGGCGGAATATCGCCAAGGCACTACCCGTAGGGAGAATGTCTCCCCCCGA
AACAGCCAAAGCACGCCAGCCCCTCGTCCCCTCAGGGGGTAATGTCTCGA
GCGTGAGGTTTGTACACCGAACGTGGTGTCCTCTTCTACGGCAGGACACG
TCGATCCTGTCACCGACCAGGAGCGACAGTGGCGGCGAGACCCTCGGTGT
TTGGTCCGCGTCAGACTTGATGTGGGAGTTAAGCCCCGGCATGCGCGCGA
TGGTAGGAGAGGAGCGCCCTCTGTCGTCGAGGGATGTCGCGGAACTTTTC
TATGGTTTGCCTCCTCGAGAGCGGAAGGTGAAACCATGAGCGGCAGGCCG
CGCCACCTTCTTGCGGTAACTCCTTTTCGCCCGTGATCATGCTCTTTCGC
AAATTACGGACTGGCGGGTGTTCACGCGACGCAGTCCAGCGAAGAATCTC
CATCAGGTCGATGACGCAAAGCGATTGCACTTCTGATTGTCTCGAAGTTG
ACGTTCAAACGCACTATCATGGGGTGTCCTTGTTGTCACACAGAGCTGAT
CGATGACCGGTTGCTGCTGTTTCAGAAGAATACTTCGGTGACTTGATGTC
TTGATGTAGGGTCTACTGAAGCTTTGATGAGCCAAACGCGCCAAAACTTT
ACGGCAATTGTTTTCCGGCTTGCGTTTGGCACACCTGTCCGTGCAGACTC
GTGGTTGCCGCGCCGATTCCCCGGAACCTTCGATAAAAGGTGTGATCTTG
GTCGTGATCTGTGCCCACCGTTCGTCTTGCCATCCATTTCCGCCCCGGCG
TGCAGGATCCCGATTTTATGCTGCAGAACATGAGCCACCAGTACGACCCC
CGACGAGGGGATACGACCCCGCCCACAACTGGCACCACCAACCCCGACCC
CACCAGCACTCGCACCAAGGCGGGGGGCCGGTCATCGCGTGGTACTGGCA
GTGGCAGCGGTCGTGCTGACCGCAGCAACACACCGCAGAGGCCAGCCGCC
AGAGACGGGGTTGCGGGAAAGAAAGCGCCCTCGAACACCGTCTCGACAAA
CGCCACCCGCAACCCCATTACAAGAACGCCTCCCCACTACCAACGCCCCA
CCACCCTGACCGAGCGCAACGTAGCCTGTCTTCTCGGGGCTGGCGGGCGT
GGCGGCCCGATGGGTGGCGTTCTCGCATGCACGGGGGAAGGCGGTGCCGT
TGGCAAGGACGGCCCTGCGCCGTGGGGCATGGAGGTTGGCGCGGCCGCGA
GAGTGAAGCGGTACATGGCGGCTAGGCACACCGACCGGGCGGCCAGGCAG
GCACGCCTTGAATACGTCACTCGGAACCTTCTCCAGGCGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16088:2..3196+

>mRNA_Ecto-sp13_S_contig16088.4449.1 ID=mRNA_Ecto-sp13_S_contig16088.4449.1|Name=mRNA_Ecto-sp13_S_contig16088.4449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16088:2..3196+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTGGAGGTCGAACTCCAACGTATGCCGGCTTTTTCGCCTGCCGCCGCT
GGTGTACGACGGTGATGGGGGGAAACGGCAGACCGTGGACGAGGACAATA
ACGACGGCGGCGTAGAGTCATCCCGTACGGGTACCGCTGCGGCCAGTAGC
GGGTTCGAGAGTGCCGACAAGACAGGCATCGGCAGTGAGGGCTCGCTGGC
GGCAAAGTACGACATATGCCGCCTGCCGTTTGTGGAGTGGGTCTTGCCGT
CCCCAATCACAGTTCTCGCGGTCTGCGAAGAGGAAGTAATGGGGGAGGCT
CAGGACGACGGCCGTGAGAAGGGCGGGGGGTGGAGCTGTTGCGGTGGAGC
CGACGCGACGGCCCCGCTCGTCGCCATCGGGACTGAAAACGGAGGAGTTT
ACCTGGGAGATGCGGCGCTGGGAACGACAAGGGCGGGGCTGTCAAGGCAC
CGTGCTCGGGTCACCGCTCTGGCGTTCCACGGGAAAAGATTTCTCGTCTC
TGGCAGCGATGACGAGATGATCCAGATCCACCACTTGACCGTCACCGATC
CAACCGGAGCTGGTGGAGACAGGTGCTGTGTCGGCGGGACCCCGCGTTTG
CGATGCCTGCACGACGCGCGAGGCAGCGGGATTGTTCGATTGGCGTGTTT
CCGAGAGATACCCCTAGCAGTCGCCGAGGATACCTCTAGGCGGGTGGTTG
TATACGACCTACTCTCGGGGAGCATGCTCGGTGTGCTGGCCTTGAAGGAT
GATGCCATCGCCAGTGTCGCTGCTGATGGGCCAGACAGGAGCGGCGACGG
GGCCGCTGTGTCGCATGAAACTGACGTGCCGAAAGCAGGCATTGTTTGGT
CGGAAGGCGGAGAGTACATAGCGGCGATCATGCCACAAAAGCAGGACACG
TCGATCCTGTCACCGACCAGGAGCGACAGTGGCGGCGAGACCCTCGGTGT
TTGGTCCGCGTCAGACTTGATGTGGGAGTTAAGCCCCGGCATGCGCGCGA
TGGTAGGAGAGGAGCGCCCTCTGTCGTCGAGGGATGTCGCGGAACTTTTC
TATGGTTTGCCTCCTCGAGAGCGGAAGGATCCCGATTTTATGCTGCAGAA
CATGAGCCACCAGTACGACCCCCGACGAGGGGATACGACCCCGCCCACAA
CTGGCACCACCAACCCCGACCCCACCAGCACTCGCACCAAGGCGGGGGGC
CGGTCATCGCGTGGTACTGGCAGTGGCAGCGGTCGTGCTGACCGCAGCAA
CACACCGCAGAGGCCAGCCGCCAGAGACGGGGTTGCGGGAAAGAAAGCGC
CCTCGAACACCGTCTCGACAAACGCCACCCGCAACCCCATTACAAGAACG
CCTCCCCACTACCAACGCCCCACCACCCTGACCGAGCGCAACGTAGCCTG
TCTTCTCGGGGCTGGCGGGCGTGGCGGCCCGATGGGTGGCGTTCTCGCAT
GCACGGGGGAAGGCGGTGCCGTTGGCAAGGACGGCCCTGCGCCGTGGGGC
ATGGAGGTTGGCGCGGCCGCGAGAGTGAAGCGGTACATGGCGGCTAGGCA
CACCGACCGGGCGGCCAGGCAGGCACGCCTTGAATACGTCACTCGGAACC
TTCTCCAGGCGTTGTGA
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