mRNA_Ecto-sp13_S_contig16085.4448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16085.4448.1
Unique NamemRNA_Ecto-sp13_S_contig16085.4448.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: D7FJ23_ECTSI (HEAT repeat-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ23_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 3.030e-53
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:   10 QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR 285
            QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHF+CREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR
Sbjct:   70 QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFACREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR 161
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: A0A6H5KF89_9PHAE (HEAT repeat-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF89_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.130e-53
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:   10 QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR 285
            QDTLFSKEAEGTLRDLQTKESN+RIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR
Sbjct:   70 QDTLFSKEAEGTLRDLQTKESNERIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR 161
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: A0A835ZGF5_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.870e-26
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   10 QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSL 273
            +DTL SK A  T R+LQT E N  +DK ++A L LLSPHF  R  H  LEYLIRHY +Y +NVDAVV C LPWHD+  F RMVQLL+L
Sbjct:  510 EDTLLSKAALSTPRELQTLEDNKALDKQLAALLRLLSPHFLQRHCHLVLEYLIRHYSIYHHNVDAVVSCILPWHDSKVFVRMVQLLNL 597
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: UPI001F076C6C (HEAT repeat-containing protein 1 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F076C6C)

HSP 1 Score: 96.3 bits (238), Expect = 3.870e-21
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   10 QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLK 276
            QDTLFS+ + G  R +Q+KE ND++D+SIS FLA LSP+F  + A  CLE+L+  + ++ YNVD+++ C LP+H+T  F R+VQLL +K
Sbjct:   66 QDTLFSQASMGMERSVQSKEINDKLDESISLFLARLSPYFLLKPAQKCLEWLVHRFYIHLYNVDSLLACVLPYHETKVFVRVVQLLKIK 154
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: G3P7C6_GASAC (HEAT repeat-containing protein 1 n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3P7C6_GASAC)

HSP 1 Score: 94.4 bits (233), Expect = 1.830e-20
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 LSSQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGS 282
            L  QDTLFS+ +    R +Q++E N+++D SIS FLA L P+F  R AH CLE+L+  + ++ YNVD+++ C LP+HDT  F R++QLL +K +
Sbjct:   63 LEFQDTLFSRASLTLERSVQSREVNEKLDASISLFLARLGPYFLLRPAHKCLEWLVHRFHIHLYNVDSLLACALPYHDTNVFVRVLQLLKIKDA 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: A0A4Z2EC42_9TELE (HEAT repeat-containing protein 1 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2EC42_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 2.660e-20
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 LSSQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSL 273
            L  QDTLFS+ +    R +Q++E N+++D  +S FLA LSP+F  + AH CLE+L+  + V  YNVDA++ C LP+HDT  F R++QLL L
Sbjct:   63 LEFQDTLFSRASLTLERSVQSREVNEKLDAGVSLFLARLSPYFLLKPAHKCLEWLVHRFHVQLYNVDALLRCSLPFHDTNVFVRVLQLLKL 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: UPI001888B273 (HEAT repeat-containing protein 1 isoform X1 n=3 Tax=Gasterosteidae TaxID=69291 RepID=UPI001888B273)

HSP 1 Score: 93.2 bits (230), Expect = 4.660e-20
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 LSSQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGS 282
            L  QDTLFS+ +    R +Q+KE N+++D  IS FLA L P+F  + AH CLE+L+  + ++ YNVD+++ C LP+HDT  F R++QLL +K +
Sbjct:   63 LEFQDTLFSRASMTLERSVQSKEVNEKLDAGISLFLARLGPYFLLKPAHKCLEWLVHRFHIHLYNVDSLLACALPYHDTNVFVRVLQLLKIKDA 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: A0A3Q3MCD9_9LABR (HEAT repeat-containing protein 1 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3MCD9_9LABR)

HSP 1 Score: 89.4 bits (220), Expect = 3.460e-19
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 LSSQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGS 282
            L  QDTLFS  +    R +Q+KE N+++D  IS FL  LSP+F  + AH C+E+L+  + +  YNVD+++ C LP+HDT  F R++QLL +K +
Sbjct:   63 LEFQDTLFSPASLTLERSVQSKEVNEKLDAGISLFLTRLSPYFLLKPAHKCIEWLVHRFHIQLYNVDSLLACVLPYHDTNVFVRVLQLLKIKDA 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: A0A6P7KJA3_9TELE (HEAT repeat-containing protein 1 n=2 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7KJA3_9TELE)

HSP 1 Score: 90.5 bits (223), Expect = 4.120e-19
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 LSSQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGS 282
            L  QDT+FS+ +    R +Q+KE N+++D SIS FL  L P+F  + AH C+E+L+  + +  YNVD+++ C LP+HDT  F R++QLL +K +
Sbjct:   63 LEFQDTIFSQSSMTLERSVQSKEVNEKLDASISLFLTRLCPYFLLKPAHKCIEWLVHRFHIQLYNVDSLLACALPYHDTKVFVRVLQLLKIKDA 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Match: A0A8D3APU5_SCOMX (HEAT repeat-containing protein 1 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3APU5_SCOMX)

HSP 1 Score: 89.7 bits (221), Expect = 7.650e-19
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:   10 QDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLK 276
            QDTLFS+ +    R +Q+KE N+++D  IS FL  LSP+F  + AH C+E+L+  + V  YNVD+++ C LP+HDT  F R++QLL +K
Sbjct:   66 QDTLFSRASLTLERSVQSKEVNEKLDAGISLFLVRLSPYFLLKPAHKCIEWLVHRFHVQLYNVDSLLACALPYHDTNVFVRVLQLLRIK 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16085.4448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ23_ECTSI3.030e-5398.91HEAT repeat-containing protein 1 n=1 Tax=Ectocarpu... [more]
A0A6H5KF89_9PHAE4.130e-5398.91HEAT repeat-containing protein 1 n=1 Tax=Ectocarpu... [more]
A0A835ZGF5_9STRA2.870e-2661.36HEAT repeat-containing protein 1 n=1 Tax=Tribonema... [more]
UPI001F076C6C3.870e-2150.56HEAT repeat-containing protein 1 n=1 Tax=Hypomesus... [more]
G3P7C6_GASAC1.830e-2046.81HEAT repeat-containing protein 1 n=1 Tax=Gasterost... [more]
A0A4Z2EC42_9TELE2.660e-2048.35HEAT repeat-containing protein 1 n=1 Tax=Liparis t... [more]
UPI001888B2734.660e-2045.74HEAT repeat-containing protein 1 isoform X1 n=3 Ta... [more]
A0A3Q3MCD9_9LABR3.460e-1944.68HEAT repeat-containing protein 1 n=1 Tax=Labrus be... [more]
A0A6P7KJA3_9TELE4.120e-1943.62HEAT repeat-containing protein 1 n=2 Tax=Parambass... [more]
A0A8D3APU5_SCOMX7.650e-1947.19HEAT repeat-containing protein 1 n=1 Tax=Scophthal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16085contigEcto-sp13_S_contig16085:3211..3498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score192.6
Seed ortholog evalue8.6e-47
Seed eggNOG ortholog2880.D7FJ23
Model size288
KEGG koko:K14550
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.rRNA processing
EggNOG OGsKOG1837@1,KOG1837@2759
Cds size288
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.1807501-CDS-Ecto-sp13_S_contig16085:3210..34981681462849.1807501-CDS-Ecto-sp13_S_contig16085:3210..3498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16085 3211..3498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16085.4448.1prot_Ecto-sp13_S_contig16085.4448.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16085 3211..3498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16085.4448.1

>prot_Ecto-sp13_S_contig16085.4448.1 ID=prot_Ecto-sp13_S_contig16085.4448.1|Name=mRNA_Ecto-sp13_S_contig16085.4448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
LSSQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFSCREAHF
CLEYLIRHYKVYQYNVDAVVECCLPWHDTVAFARMVQLLSLKGSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig16085:3211..3498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16085.4448.1 ID=mRNA_Ecto-sp13_S_contig16085.4448.1|Name=mRNA_Ecto-sp13_S_contig16085.4448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16085:3211..3498- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCCTCACAGGACACTCTGTTCAGCAAGGAAGCGGAGGGCACCCTACG
TGACCTGCAGACCAAGGAGTCGAACGATCGCATCGACAAGAGCATCTCGG
CGTTCCTGGCCCTGCTATCCCCTCACTTCTCTTGCCGGGAGGCGCACTTC
TGCCTCGAGTACCTGATCCGGCACTACAAGGTCTACCAGTACAACGTCGA
CGCCGTTGTGGAGTGTTGCCTGCCGTGGCACGACACCGTGGCCTTCGCGC
GGATGGTCCAGCTACTCAGCCTTAAGGGGTCGAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16085:3211..3498-

>mRNA_Ecto-sp13_S_contig16085.4448.1 ID=mRNA_Ecto-sp13_S_contig16085.4448.1|Name=mRNA_Ecto-sp13_S_contig16085.4448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16085:3211..3498- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCCTCACAGGACACTCTGTTCAGCAAGGAAGCGGAGGGCACCCTACG
TGACCTGCAGACCAAGGAGTCGAACGATCGCATCGACAAGAGCATCTCGG
CGTTCCTGGCCCTGCTATCCCCTCACTTCTCTTGCCGGGAGGCGCACTTC
TGCCTCGAGTACCTGATCCGGCACTACAAGGTCTACCAGTACAACGTCGA
CGCCGTTGTGGAGTGTTGCCTGCCGTGGCACGACACCGTGGCCTTCGCGC
GGATGGTCCAGCTACTCAGCCTTAAGGGGTCGAGGTGA
back to top